Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004953

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004952 and ABIE53_004953 are separated by 339 nucleotidesABIE53_004953 and ABIE53_004954 are separated by 27 nucleotidesABIE53_004954 and ABIE53_004955 overlap by 4 nucleotides ABIE53_004952: ABIE53_004952 - 3-methylfumaryl-CoA hydratase, at 1,173,115 to 1,173,957 _004952 ABIE53_004953: ABIE53_004953 - uncharacterized protein YfaA (DUF2138 family), at 1,174,297 to 1,176,102 _004953 ABIE53_004954: ABIE53_004954 - uncharacterized protein YfaT (DUF1175 family), at 1,176,130 to 1,176,894 _004954 ABIE53_004955: ABIE53_004955 - uncharacterized protein YfaS (alpha-2-macroglobulin family), at 1,176,891 to 1,181,708 _004955 Position (kb) 1174 1175 1176 1177Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1173.544 kb on + strand, within ABIE53_004952at 1173.652 kb on + strand, within ABIE53_004952at 1173.688 kb on + strand, within ABIE53_004952at 1173.688 kb on + strand, within ABIE53_004952at 1173.700 kb on + strand, within ABIE53_004952at 1173.701 kb on - strand, within ABIE53_004952at 1173.701 kb on - strand, within ABIE53_004952at 1173.701 kb on - strand, within ABIE53_004952at 1173.817 kb on + strand, within ABIE53_004952at 1173.817 kb on + strand, within ABIE53_004952at 1173.818 kb on - strand, within ABIE53_004952at 1173.818 kb on - strand, within ABIE53_004952at 1173.818 kb on - strand, within ABIE53_004952at 1173.818 kb on - strand, within ABIE53_004952at 1173.818 kb on - strand, within ABIE53_004952at 1173.885 kb on + strandat 1173.885 kb on + strandat 1173.886 kb on - strandat 1173.886 kb on - strandat 1173.900 kb on - strandat 1173.987 kb on + strandat 1173.988 kb on - strandat 1174.053 kb on - strandat 1174.053 kb on - strandat 1174.065 kb on - strandat 1174.091 kb on - strandat 1174.127 kb on + strandat 1174.128 kb on - strandat 1174.128 kb on - strandat 1174.129 kb on + strandat 1174.209 kb on + strandat 1174.210 kb on - strandat 1174.267 kb on - strandat 1174.429 kb on - strandat 1174.485 kb on + strand, within ABIE53_004953at 1174.485 kb on + strand, within ABIE53_004953at 1174.485 kb on + strand, within ABIE53_004953at 1174.486 kb on - strand, within ABIE53_004953at 1174.486 kb on - strand, within ABIE53_004953at 1174.486 kb on - strand, within ABIE53_004953at 1174.502 kb on + strand, within ABIE53_004953at 1174.502 kb on + strand, within ABIE53_004953at 1174.502 kb on + strand, within ABIE53_004953at 1174.503 kb on - strand, within ABIE53_004953at 1174.503 kb on - strand, within ABIE53_004953at 1174.540 kb on + strand, within ABIE53_004953at 1174.540 kb on + strand, within ABIE53_004953at 1174.540 kb on + strand, within ABIE53_004953at 1174.540 kb on + strand, within ABIE53_004953at 1174.541 kb on - strand, within ABIE53_004953at 1174.813 kb on + strand, within ABIE53_004953at 1174.813 kb on + strand, within ABIE53_004953at 1174.813 kb on + strand, within ABIE53_004953at 1174.813 kb on + strand, within ABIE53_004953at 1174.813 kb on + strand, within ABIE53_004953at 1174.814 kb on - strand, within ABIE53_004953at 1174.814 kb on - strand, within ABIE53_004953at 1174.814 kb on - strand, within ABIE53_004953at 1174.987 kb on + strand, within ABIE53_004953at 1175.047 kb on + strand, within ABIE53_004953at 1175.047 kb on + strand, within ABIE53_004953at 1175.047 kb on + strand, within ABIE53_004953at 1175.047 kb on + strand, within ABIE53_004953at 1175.047 kb on + strand, within ABIE53_004953at 1175.047 kb on + strand, within ABIE53_004953at 1175.047 kb on + strand, within ABIE53_004953at 1175.048 kb on - strand, within ABIE53_004953at 1175.048 kb on - strand, within ABIE53_004953at 1175.048 kb on - strand, within ABIE53_004953at 1175.048 kb on - strand, within ABIE53_004953at 1175.062 kb on + strand, within ABIE53_004953at 1175.347 kb on + strand, within ABIE53_004953at 1175.467 kb on + strand, within ABIE53_004953at 1175.467 kb on + strand, within ABIE53_004953at 1175.467 kb on + strand, within ABIE53_004953at 1175.468 kb on - strand, within ABIE53_004953at 1175.468 kb on - strand, within ABIE53_004953at 1175.510 kb on - strand, within ABIE53_004953at 1175.641 kb on + strand, within ABIE53_004953at 1175.642 kb on - strand, within ABIE53_004953at 1175.642 kb on - strand, within ABIE53_004953at 1175.674 kb on + strand, within ABIE53_004953at 1175.675 kb on - strand, within ABIE53_004953at 1175.675 kb on - strand, within ABIE53_004953at 1175.675 kb on - strand, within ABIE53_004953at 1175.755 kb on - strand, within ABIE53_004953at 1175.785 kb on - strand, within ABIE53_004953at 1175.785 kb on - strand, within ABIE53_004953at 1175.785 kb on - strand, within ABIE53_004953at 1175.868 kb on - strand, within ABIE53_004953at 1175.924 kb on - strandat 1175.924 kb on - strandat 1176.100 kb on + strandat 1176.119 kb on + strandat 1176.119 kb on + strandat 1176.119 kb on + strandat 1176.120 kb on - strandat 1176.120 kb on - strandat 1176.129 kb on + strandat 1176.129 kb on + strandat 1176.130 kb on - strandat 1176.130 kb on - strandat 1176.604 kb on + strand, within ABIE53_004954at 1176.604 kb on + strand, within ABIE53_004954at 1176.604 kb on + strand, within ABIE53_004954at 1176.604 kb on + strand, within ABIE53_004954at 1176.605 kb on + strand, within ABIE53_004954at 1176.605 kb on - strand, within ABIE53_004954at 1176.605 kb on - strand, within ABIE53_004954at 1176.636 kb on + strand, within ABIE53_004954at 1176.637 kb on - strand, within ABIE53_004954at 1176.637 kb on - strand, within ABIE53_004954at 1176.736 kb on + strand, within ABIE53_004954at 1176.736 kb on + strand, within ABIE53_004954at 1176.736 kb on + strand, within ABIE53_004954at 1176.737 kb on - strand, within ABIE53_004954at 1176.737 kb on - strand, within ABIE53_004954at 1176.737 kb on - strand, within ABIE53_004954at 1176.745 kb on + strand, within ABIE53_004954at 1176.745 kb on + strand, within ABIE53_004954at 1176.959 kb on + strandat 1176.959 kb on + strandat 1176.959 kb on + strandat 1176.959 kb on + strandat 1176.960 kb on - strandat 1176.960 kb on - strandat 1176.960 kb on - strandat 1176.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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1,173,544 + ABIE53_004952 0.51 -0.9
1,173,652 + ABIE53_004952 0.64 +1.6
1,173,688 + ABIE53_004952 0.68 -0.6
1,173,688 + ABIE53_004952 0.68 +1.0
1,173,700 + ABIE53_004952 0.69 -1.4
1,173,701 - ABIE53_004952 0.70 +0.4
1,173,701 - ABIE53_004952 0.70 -0.9
1,173,701 - ABIE53_004952 0.70 +1.2
1,173,817 + ABIE53_004952 0.83 +1.4
1,173,817 + ABIE53_004952 0.83 -0.4
1,173,818 - ABIE53_004952 0.83 -0.2
1,173,818 - ABIE53_004952 0.83 +0.4
1,173,818 - ABIE53_004952 0.83 +2.0
1,173,818 - ABIE53_004952 0.83 -1.9
1,173,818 - ABIE53_004952 0.83 +2.0
1,173,885 + -0.2
1,173,885 + +0.6
1,173,886 - +0.0
1,173,886 - -1.5
1,173,900 - +3.5
1,173,987 + +0.4
1,173,988 - -0.8
1,174,053 - +1.0
1,174,053 - -0.6
1,174,065 - +0.4
1,174,091 - -0.2
1,174,127 + -0.0
1,174,128 - -0.0
1,174,128 - +0.1
1,174,129 + +2.5
1,174,209 + -0.0
1,174,210 - +0.0
1,174,267 - -0.5
1,174,429 - -2.3
1,174,485 + ABIE53_004953 0.10 +1.0
1,174,485 + ABIE53_004953 0.10 -1.0
1,174,485 + ABIE53_004953 0.10 +1.5
1,174,486 - ABIE53_004953 0.10 +2.0
1,174,486 - ABIE53_004953 0.10 +1.7
1,174,486 - ABIE53_004953 0.10 +0.3
1,174,502 + ABIE53_004953 0.11 +2.0
1,174,502 + ABIE53_004953 0.11 -0.6
1,174,502 + ABIE53_004953 0.11 -0.4
1,174,503 - ABIE53_004953 0.11 -0.6
1,174,503 - ABIE53_004953 0.11 +0.1
1,174,540 + ABIE53_004953 0.13 -0.0
1,174,540 + ABIE53_004953 0.13 -1.0
1,174,540 + ABIE53_004953 0.13 +3.0
1,174,540 + ABIE53_004953 0.13 +0.4
1,174,541 - ABIE53_004953 0.14 +1.0
1,174,813 + ABIE53_004953 0.29 -0.4
1,174,813 + ABIE53_004953 0.29 +0.4
1,174,813 + ABIE53_004953 0.29 +1.0
1,174,813 + ABIE53_004953 0.29 -1.6
1,174,813 + ABIE53_004953 0.29 +0.1
1,174,814 - ABIE53_004953 0.29 +0.4
1,174,814 - ABIE53_004953 0.29 +1.4
1,174,814 - ABIE53_004953 0.29 -0.6
1,174,987 + ABIE53_004953 0.38 -1.7
1,175,047 + ABIE53_004953 0.42 -0.4
1,175,047 + ABIE53_004953 0.42 +0.4
1,175,047 + ABIE53_004953 0.42 -1.0
1,175,047 + ABIE53_004953 0.42 -0.0
1,175,047 + ABIE53_004953 0.42 +2.6
1,175,047 + ABIE53_004953 0.42 -0.0
1,175,047 + ABIE53_004953 0.42 -2.9
1,175,048 - ABIE53_004953 0.42 -1.2
1,175,048 - ABIE53_004953 0.42 +0.5
1,175,048 - ABIE53_004953 0.42 -0.8
1,175,048 - ABIE53_004953 0.42 -0.6
1,175,062 + ABIE53_004953 0.42 -0.0
1,175,347 + ABIE53_004953 0.58 +1.0
1,175,467 + ABIE53_004953 0.65 -0.0
1,175,467 + ABIE53_004953 0.65 -0.4
1,175,467 + ABIE53_004953 0.65 +0.0
1,175,468 - ABIE53_004953 0.65 +0.4
1,175,468 - ABIE53_004953 0.65 +1.4
1,175,510 - ABIE53_004953 0.67 -0.4
1,175,641 + ABIE53_004953 0.74 -0.4
1,175,642 - ABIE53_004953 0.74 +0.4
1,175,642 - ABIE53_004953 0.74 +0.4
1,175,674 + ABIE53_004953 0.76 -0.4
1,175,675 - ABIE53_004953 0.76 -0.6
1,175,675 - ABIE53_004953 0.76 -3.0
1,175,675 - ABIE53_004953 0.76 -0.4
1,175,755 - ABIE53_004953 0.81 -0.2
1,175,785 - ABIE53_004953 0.82 +1.2
1,175,785 - ABIE53_004953 0.82 +1.0
1,175,785 - ABIE53_004953 0.82 -1.4
1,175,868 - ABIE53_004953 0.87 -0.3
1,175,924 - -1.9
1,175,924 - -1.0
1,176,100 + -1.2
1,176,119 + -0.0
1,176,119 + +2.0
1,176,119 + +0.6
1,176,120 - +0.8
1,176,120 - +1.2
1,176,129 + +2.0
1,176,129 + +0.1
1,176,130 - +0.5
1,176,130 - -2.2
1,176,604 + ABIE53_004954 0.62 +0.5
1,176,604 + ABIE53_004954 0.62 +1.0
1,176,604 + ABIE53_004954 0.62 +0.4
1,176,604 + ABIE53_004954 0.62 +0.4
1,176,605 + ABIE53_004954 0.62 +1.0
1,176,605 - ABIE53_004954 0.62 +0.6
1,176,605 - ABIE53_004954 0.62 +2.0
1,176,636 + ABIE53_004954 0.66 +0.2
1,176,637 - ABIE53_004954 0.66 +1.2
1,176,637 - ABIE53_004954 0.66 +2.0
1,176,736 + ABIE53_004954 0.79 +2.6
1,176,736 + ABIE53_004954 0.79 -0.0
1,176,736 + ABIE53_004954 0.79 +0.3
1,176,737 - ABIE53_004954 0.79 +0.4
1,176,737 - ABIE53_004954 0.79 +0.3
1,176,737 - ABIE53_004954 0.79 +0.0
1,176,745 + ABIE53_004954 0.80 -0.6
1,176,745 + ABIE53_004954 0.80 -0.9
1,176,959 + +3.0
1,176,959 + -0.4
1,176,959 + +0.5
1,176,959 + -1.7
1,176,960 - -0.9
1,176,960 - -0.0
1,176,960 - -0.7
1,176,960 - -0.6

Or see this region's nucleotide sequence