Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000128

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000127 and ABIE53_000128 are separated by 19 nucleotidesABIE53_000128 and ABIE53_000129 are separated by 243 nucleotidesABIE53_000129 and ABIE53_000130 are separated by 49 nucleotides ABIE53_000127: ABIE53_000127 - chemotaxis protein MotB, at 134,034 to 135,041 _000127 ABIE53_000128: ABIE53_000128 - chemotaxis protein MotA, at 135,061 to 135,921 _000128 ABIE53_000129: ABIE53_000129 - flagellar transcriptional activator FlhC, at 136,165 to 136,725 _000129 ABIE53_000130: ABIE53_000130 - flagellar transcriptional activator FlhD, at 136,775 to 137,095 _000130 Position (kb) 135 136Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 134.360 kb on - strand, within ABIE53_000127at 134.360 kb on - strand, within ABIE53_000127at 134.380 kb on + strand, within ABIE53_000127at 134.381 kb on - strand, within ABIE53_000127at 134.381 kb on - strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.471 kb on - strand, within ABIE53_000127at 134.774 kb on + strand, within ABIE53_000127at 134.774 kb on + strand, within ABIE53_000127at 134.775 kb on - strand, within ABIE53_000127at 134.775 kb on - strand, within ABIE53_000127at 134.775 kb on - strand, within ABIE53_000127at 134.861 kb on - strand, within ABIE53_000127at 134.861 kb on - strand, within ABIE53_000127at 134.861 kb on - strand, within ABIE53_000127at 134.861 kb on - strand, within ABIE53_000127at 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.063 kb on - strandat 135.063 kb on - strandat 135.063 kb on - strandat 135.063 kb on - strandat 135.167 kb on + strand, within ABIE53_000128at 135.167 kb on + strand, within ABIE53_000128at 135.272 kb on + strand, within ABIE53_000128at 135.272 kb on + strand, within ABIE53_000128at 135.272 kb on + strand, within ABIE53_000128at 135.273 kb on - strand, within ABIE53_000128at 135.536 kb on + strand, within ABIE53_000128at 135.536 kb on + strand, within ABIE53_000128at 135.536 kb on + strand, within ABIE53_000128at 135.536 kb on + strand, within ABIE53_000128at 135.537 kb on - strand, within ABIE53_000128at 135.537 kb on - strand, within ABIE53_000128at 135.537 kb on - strand, within ABIE53_000128at 135.585 kb on - strand, within ABIE53_000128at 135.674 kb on + strand, within ABIE53_000128at 135.674 kb on + strand, within ABIE53_000128at 135.674 kb on + strand, within ABIE53_000128at 135.674 kb on + strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.713 kb on + strand, within ABIE53_000128at 135.713 kb on + strand, within ABIE53_000128at 135.714 kb on - strand, within ABIE53_000128at 135.714 kb on - strand, within ABIE53_000128at 135.714 kb on - strand, within ABIE53_000128at 135.714 kb on - strand, within ABIE53_000128at 135.787 kb on - strand, within ABIE53_000128at 135.959 kb on + strandat 135.960 kb on - strandat 136.021 kb on + strandat 136.021 kb on + strandat 136.021 kb on + strandat 136.021 kb on + strandat 136.120 kb on + strandat 136.120 kb on + strandat 136.120 kb on + strandat 136.121 kb on - strandat 136.166 kb on + strandat 136.225 kb on - strand, within ABIE53_000129at 136.421 kb on + strand, within ABIE53_000129at 136.422 kb on - strand, within ABIE53_000129at 136.430 kb on + strand, within ABIE53_000129at 136.487 kb on + strand, within ABIE53_000129at 136.488 kb on + strand, within ABIE53_000129at 136.488 kb on - strand, within ABIE53_000129at 136.488 kb on - strand, within ABIE53_000129at 136.488 kb on - strand, within ABIE53_000129at 136.488 kb on - strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.716 kb on + strandat 136.716 kb on + strandat 136.716 kb on + strandat 136.716 kb on + strandat 136.716 kb on + strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.719 kb on - strandat 136.719 kb on - strandat 136.719 kb on - strandat 136.719 kb on - strandat 136.719 kb on - strandat 136.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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134,360 - ABIE53_000127 0.32 +2.4
134,360 - ABIE53_000127 0.32 +2.6
134,380 + ABIE53_000127 0.34 +2.9
134,381 - ABIE53_000127 0.34 +3.0
134,381 - ABIE53_000127 0.34 +2.2
134,470 + ABIE53_000127 0.43 +4.0
134,470 + ABIE53_000127 0.43 +3.8
134,470 + ABIE53_000127 0.43 +3.2
134,470 + ABIE53_000127 0.43 +3.1
134,470 + ABIE53_000127 0.43 +3.6
134,470 + ABIE53_000127 0.43 +2.8
134,470 + ABIE53_000127 0.43 +3.3
134,470 + ABIE53_000127 0.43 +3.0
134,470 + ABIE53_000127 0.43 +3.9
134,470 + ABIE53_000127 0.43 +1.6
134,470 + ABIE53_000127 0.43 +3.3
134,471 - ABIE53_000127 0.43 +1.2
134,774 + ABIE53_000127 0.73 +3.1
134,774 + ABIE53_000127 0.73 +2.9
134,775 - ABIE53_000127 0.74 +2.9
134,775 - ABIE53_000127 0.74 +2.0
134,775 - ABIE53_000127 0.74 +2.2
134,861 - ABIE53_000127 0.82 +3.1
134,861 - ABIE53_000127 0.82 +1.4
134,861 - ABIE53_000127 0.82 +3.0
134,861 - ABIE53_000127 0.82 +2.9
135,062 + +4.7
135,062 + +3.4
135,062 + +2.1
135,062 + +3.5
135,062 + +4.5
135,062 + +3.1
135,062 + +3.3
135,063 - -1.9
135,063 - -0.5
135,063 - +0.8
135,063 - -0.5
135,167 + ABIE53_000128 0.12 +4.0
135,167 + ABIE53_000128 0.12 +3.3
135,272 + ABIE53_000128 0.25 +4.3
135,272 + ABIE53_000128 0.25 +3.5
135,272 + ABIE53_000128 0.25 +4.1
135,273 - ABIE53_000128 0.25 +5.4
135,536 + ABIE53_000128 0.55 +3.9
135,536 + ABIE53_000128 0.55 +3.7
135,536 + ABIE53_000128 0.55 +3.8
135,536 + ABIE53_000128 0.55 +3.3
135,537 - ABIE53_000128 0.55 +3.6
135,537 - ABIE53_000128 0.55 +3.4
135,537 - ABIE53_000128 0.55 +3.0
135,585 - ABIE53_000128 0.61 +3.0
135,674 + ABIE53_000128 0.71 +3.0
135,674 + ABIE53_000128 0.71 +4.3
135,674 + ABIE53_000128 0.71 +2.9
135,674 + ABIE53_000128 0.71 +2.5
135,675 - ABIE53_000128 0.71 +3.8
135,675 - ABIE53_000128 0.71 +2.7
135,675 - ABIE53_000128 0.71 +2.9
135,675 - ABIE53_000128 0.71 +3.4
135,675 - ABIE53_000128 0.71 +3.4
135,698 + ABIE53_000128 0.74 +4.1
135,698 + ABIE53_000128 0.74 +2.5
135,698 + ABIE53_000128 0.74 +3.8
135,698 + ABIE53_000128 0.74 +3.0
135,698 + ABIE53_000128 0.74 +2.0
135,699 - ABIE53_000128 0.74 +2.9
135,699 - ABIE53_000128 0.74 +3.8
135,699 - ABIE53_000128 0.74 +3.6
135,699 - ABIE53_000128 0.74 +2.9
135,699 - ABIE53_000128 0.74 +4.8
135,699 - ABIE53_000128 0.74 +3.0
135,699 - ABIE53_000128 0.74 +1.6
135,699 - ABIE53_000128 0.74 +3.6
135,699 - ABIE53_000128 0.74 +3.4
135,713 + ABIE53_000128 0.76 +3.8
135,713 + ABIE53_000128 0.76 +3.6
135,714 - ABIE53_000128 0.76 +2.6
135,714 - ABIE53_000128 0.76 +3.1
135,714 - ABIE53_000128 0.76 +2.8
135,714 - ABIE53_000128 0.76 +2.4
135,787 - ABIE53_000128 0.84 +2.7
135,959 + +3.4
135,960 - -0.0
136,021 + +1.5
136,021 + -0.8
136,021 + +1.3
136,021 + -0.2
136,120 + -0.8
136,120 + -2.6
136,120 + -0.2
136,121 - -0.6
136,166 + -0.8
136,225 - ABIE53_000129 0.11 -0.1
136,421 + ABIE53_000129 0.46 -0.3
136,422 - ABIE53_000129 0.46 -1.5
136,430 + ABIE53_000129 0.47 +0.2
136,487 + ABIE53_000129 0.57 -0.5
136,488 + ABIE53_000129 0.58 -0.2
136,488 - ABIE53_000129 0.58 -0.7
136,488 - ABIE53_000129 0.58 +2.7
136,488 - ABIE53_000129 0.58 -0.0
136,488 - ABIE53_000129 0.58 +2.5
136,496 + ABIE53_000129 0.59 -1.6
136,496 + ABIE53_000129 0.59 +0.2
136,496 + ABIE53_000129 0.59 -0.5
136,496 + ABIE53_000129 0.59 +0.0
136,496 + ABIE53_000129 0.59 -0.3
136,496 + ABIE53_000129 0.59 +0.2
136,497 - ABIE53_000129 0.59 -0.2
136,497 - ABIE53_000129 0.59 +1.9
136,497 - ABIE53_000129 0.59 -0.8
136,497 - ABIE53_000129 0.59 -1.4
136,497 - ABIE53_000129 0.59 -0.8
136,595 + ABIE53_000129 0.77 -0.5
136,595 + ABIE53_000129 0.77 -0.5
136,595 + ABIE53_000129 0.77 +0.5
136,595 + ABIE53_000129 0.77 -0.8
136,595 + ABIE53_000129 0.77 -0.6
136,595 + ABIE53_000129 0.77 -1.2
136,595 + ABIE53_000129 0.77 -0.2
136,595 + ABIE53_000129 0.77 -0.1
136,596 - ABIE53_000129 0.77 +0.1
136,596 - ABIE53_000129 0.77 -0.5
136,596 - ABIE53_000129 0.77 +0.2
136,596 - ABIE53_000129 0.77 +1.3
136,596 - ABIE53_000129 0.77 +2.8
136,596 - ABIE53_000129 0.77 +1.8
136,596 - ABIE53_000129 0.77 -0.8
136,716 + -0.8
136,716 + +1.2
136,716 + +1.4
136,716 + -1.1
136,716 + +0.2
136,717 - +0.4
136,717 - -0.4
136,717 - -0.3
136,717 - +0.5
136,717 - -0.2
136,717 - +0.2
136,717 - +0.8
136,717 - +1.0
136,717 - +1.0
136,717 - +0.4
136,717 - +0.6
136,717 - -1.0
136,717 - +0.6
136,717 - -0.2
136,717 - -1.0
136,718 + +0.2
136,718 + -0.7
136,718 + +0.1
136,718 + -0.0
136,718 + +0.8
136,718 + -0.8
136,718 + -1.5
136,719 - +0.6
136,719 - +0.5
136,719 - -0.2
136,719 - -0.5
136,719 - -0.5
136,719 - -0.9

Or see this region's nucleotide sequence