Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000100

Experiment: Xylitol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylitol (C)
108,000	+		ABIE53_000098	0.54	+4.1
108,000	+		ABIE53_000098	0.54	+4.2
108,001	-		ABIE53_000098	0.54	+4.1
108,036	+		ABIE53_000098	0.58	+3.6
108,036	+		ABIE53_000098	0.58	+3.3
108,036	+		ABIE53_000098	0.58	+3.9
108,036	+		ABIE53_000098	0.58	+3.2
108,036	+		ABIE53_000098	0.58	+4.2
108,036	+		ABIE53_000098	0.58	+4.3
108,036	+		ABIE53_000098	0.58	+4.0
108,037	-		ABIE53_000098	0.58	+3.6
108,037	-		ABIE53_000098	0.58	+5.1
108,037	-		ABIE53_000098	0.58	+3.6
108,037	-		ABIE53_000098	0.58	+3.6
108,037	-		ABIE53_000098	0.58	+3.9
108,037	-		ABIE53_000098	0.58	+3.3
108,037	-		ABIE53_000098	0.58	+3.9
108,037	-		ABIE53_000098	0.58	+4.0
108,037	-		ABIE53_000098	0.58	+3.6
108,037	-		ABIE53_000098	0.58	+4.0
108,037	-		ABIE53_000098	0.58	+4.0
108,037	-		ABIE53_000098	0.58	+3.8
108,037	-		ABIE53_000098	0.58	+3.9
108,037	-		ABIE53_000098	0.58	+4.0
108,037	-		ABIE53_000098	0.58	+1.8
108,037	-		ABIE53_000098	0.58	+4.0
108,073	-		ABIE53_000098	0.61	+3.8
108,093	+		ABIE53_000098	0.63	+3.2
108,093	+		ABIE53_000098	0.63	+3.9
108,093	+		ABIE53_000098	0.63	+4.0
108,093	+		ABIE53_000098	0.63	+4.3
108,093	+		ABIE53_000098	0.63	+4.0
108,093	+		ABIE53_000098	0.63	+3.7
108,094	-		ABIE53_000098	0.63	+3.5
108,094	-		ABIE53_000098	0.63	+3.7
108,094	-		ABIE53_000098	0.63	+3.1
108,094	-		ABIE53_000098	0.63	+4.0
108,094	-		ABIE53_000098	0.63	+4.4
108,094	-		ABIE53_000098	0.63	+4.5
108,094	-		ABIE53_000098	0.63	+3.8
108,094	-		ABIE53_000098	0.63	+3.9
108,097	+		ABIE53_000098	0.63	+3.6
108,097	+		ABIE53_000098	0.63	+4.0
108,097	+		ABIE53_000098	0.63	+4.6
108,097	+		ABIE53_000098	0.63	+4.3
108,097	+		ABIE53_000098	0.63	+3.9
108,097	+		ABIE53_000098	0.63	+3.5
108,097	+		ABIE53_000098	0.63	+4.6
108,098	-		ABIE53_000098	0.63	+3.9
108,098	-		ABIE53_000098	0.63	+4.5
108,098	-		ABIE53_000098	0.63	+4.0
108,098	-		ABIE53_000098	0.63	+3.4
108,098	-		ABIE53_000098	0.63	+4.1
108,098	-		ABIE53_000098	0.63	+3.9
108,098	-		ABIE53_000098	0.63	+3.9
108,098	-		ABIE53_000098	0.63	+3.5
108,098	-		ABIE53_000098	0.63	+4.3
108,099	+		ABIE53_000098	0.63	+4.1
108,099	+		ABIE53_000098	0.63	+3.9
108,099	+		ABIE53_000098	0.63	+3.9
108,099	+		ABIE53_000098	0.63	+2.9
108,099	+		ABIE53_000098	0.63	+4.2
108,099	+		ABIE53_000098	0.63	+4.1
108,099	+		ABIE53_000098	0.63	+3.9
108,099	+		ABIE53_000098	0.63	+3.0
108,099	+		ABIE53_000098	0.63	+3.2
108,099	+		ABIE53_000098	0.63	+5.4
108,100	-		ABIE53_000098	0.63	+4.0
108,100	-		ABIE53_000098	0.63	+4.4
108,100	-		ABIE53_000098	0.63	+4.1
108,100	-		ABIE53_000098	0.63	+4.3
108,100	-		ABIE53_000098	0.63	+3.9
108,100	-		ABIE53_000098	0.63	+3.1
108,100	-		ABIE53_000098	0.63	+3.8
108,100	-		ABIE53_000098	0.63	+3.9
108,100	-		ABIE53_000098	0.63	+3.7
108,100	-		ABIE53_000098	0.63	+4.3
108,100	-		ABIE53_000098	0.63	+3.8
108,150	+		ABIE53_000098	0.68	+4.3
108,150	+		ABIE53_000098	0.68	+3.7
108,150	+		ABIE53_000098	0.68	+4.2
108,151	-		ABIE53_000098	0.68	+4.0
108,151	-		ABIE53_000098	0.68	+4.5
108,151	-		ABIE53_000098	0.68	+3.8
108,228	+		ABIE53_000098	0.75	+3.7
108,228	+		ABIE53_000098	0.75	+3.4
108,228	+		ABIE53_000098	0.75	+3.9
108,228	+		ABIE53_000098	0.75	+4.0
108,229	-		ABIE53_000098	0.75	+3.9
108,229	-		ABIE53_000098	0.75	+3.7
108,229	-		ABIE53_000098	0.75	+4.1
108,273	+		ABIE53_000098	0.79	+4.9
108,273	+		ABIE53_000098	0.79	+2.4
108,273	+		ABIE53_000098	0.79	+3.9
108,303	+		ABIE53_000098	0.82	+3.9
108,303	+		ABIE53_000098	0.82	+3.7
108,303	+		ABIE53_000098	0.82	+3.9
108,303	+		ABIE53_000098	0.82	+3.8
108,303	+		ABIE53_000098	0.82	+2.2
108,303	+		ABIE53_000098	0.82	+3.8
108,303	+		ABIE53_000098	0.82	+3.5
108,303	+		ABIE53_000098	0.82	+3.2
108,303	+		ABIE53_000098	0.82	+3.8
108,303	+		ABIE53_000098	0.82	+4.0
108,303	+		ABIE53_000098	0.82	+4.3
108,303	+		ABIE53_000098	0.82	+4.5
108,304	-		ABIE53_000098	0.82	+3.9
108,304	-		ABIE53_000098	0.82	+4.3
108,304	-		ABIE53_000098	0.82	+4.0
108,304	-		ABIE53_000098	0.82	+4.1
108,304	-		ABIE53_000098	0.82	+3.6
108,304	-		ABIE53_000098	0.82	+4.0
108,304	-		ABIE53_000098	0.82	+3.9
108,304	-		ABIE53_000098	0.82	+4.1
108,304	-		ABIE53_000098	0.82	+3.8
108,304	-		ABIE53_000098	0.82	+3.6
108,304	-		ABIE53_000098	0.82	+3.5
108,304	-		ABIE53_000098	0.82	+4.1
108,541	+				+3.7
108,541	+				+3.9
108,541	+				+3.3
108,542	-				+3.7
108,542	-				+3.9
108,616	+		ABIE53_000099	0.12	+4.4
108,617	-		ABIE53_000099	0.13	+4.2
108,617	-		ABIE53_000099	0.13	+3.8
108,787	+		ABIE53_000099	0.63	+3.3
108,787	+		ABIE53_000099	0.63	+3.3
108,787	+		ABIE53_000099	0.63	+4.2
108,787	+		ABIE53_000099	0.63	+3.6
108,787	+		ABIE53_000099	0.63	+3.1
108,787	+		ABIE53_000099	0.63	+2.7
108,787	+		ABIE53_000099	0.63	+3.9
108,787	+		ABIE53_000099	0.63	+3.7
108,787	+		ABIE53_000099	0.63	+4.3
108,787	+		ABIE53_000099	0.63	+4.1
108,787	+		ABIE53_000099	0.63	+3.6
108,787	+		ABIE53_000099	0.63	+3.4
108,787	+		ABIE53_000099	0.63	+3.9
108,787	+		ABIE53_000099	0.63	+3.6
108,787	+		ABIE53_000099	0.63	+3.3
108,787	+		ABIE53_000099	0.63	+3.2
108,787	+		ABIE53_000099	0.63	+4.1
108,788	-		ABIE53_000099	0.64	+3.5
108,788	-		ABIE53_000099	0.64	+3.4
108,788	-		ABIE53_000099	0.64	+4.4
108,788	-		ABIE53_000099	0.64	+4.0
108,788	-		ABIE53_000099	0.64	+3.9
108,830	+		ABIE53_000099	0.76	+3.8
108,830	+		ABIE53_000099	0.76	+3.8
108,831	-		ABIE53_000099	0.76	+3.8
108,907	+				+4.1
108,908	-				+3.7
108,908	-				+4.2
108,908	-				+3.9
108,940	+				+3.3
108,940	+				+3.3
108,941	-				+0.8
109,127	+		ABIE53_000100	0.22	+3.7
109,127	+		ABIE53_000100	0.22	+3.7
109,127	+		ABIE53_000100	0.22	+2.6
109,127	+		ABIE53_000100	0.22	+4.4
109,127	+		ABIE53_000100	0.22	+4.0
109,128	-		ABIE53_000100	0.22	+2.8
109,128	-		ABIE53_000100	0.22	+1.8
109,128	-		ABIE53_000100	0.22	+3.2
109,635	+				+3.7
109,636	-				+3.8
109,776	+		ABIE53_000101	0.16	+3.5
109,776	+		ABIE53_000101	0.16	+3.3
109,776	+		ABIE53_000101	0.16	+3.5
109,777	-		ABIE53_000101	0.17	+3.4
109,777	-		ABIE53_000101	0.17	+3.7
109,777	-		ABIE53_000101	0.17	+3.4
109,842	+		ABIE53_000101	0.32	+3.9
109,842	+		ABIE53_000101	0.32	+3.9
109,842	+		ABIE53_000101	0.32	+5.4
109,842	+		ABIE53_000101	0.32	+3.9
109,842	+		ABIE53_000101	0.32	+3.7
109,843	-		ABIE53_000101	0.32	+3.7
109,843	-		ABIE53_000101	0.32	+3.2
109,843	-		ABIE53_000101	0.32	+3.2
109,843	-		ABIE53_000101	0.32	+3.1
109,843	-		ABIE53_000101	0.32	+2.4
109,843	-		ABIE53_000101	0.32	+3.6
109,843	-		ABIE53_000101	0.32	+3.6
109,879	-		ABIE53_000101	0.41	+3.1
109,879	-		ABIE53_000101	0.41	+4.1
110,004	+		ABIE53_000101	0.70	+3.0
110,004	+		ABIE53_000101	0.70	+3.6
110,004	+		ABIE53_000101	0.70	+4.5
110,005	-		ABIE53_000101	0.70	+4.0
110,005	-		ABIE53_000101	0.70	+5.0
110,111	+				+3.9
110,111	+				+3.8
110,111	+				+4.1
110,111	+				+4.9
110,111	+				+4.1
110,111	+				+4.0
110,111	+				+4.4
110,111	+				+3.8
110,111	+				+4.3
110,111	+				+3.9
110,111	+				+3.3
110,111	+				+3.9
110,111	+				+4.0
110,111	+				+3.5
110,111	+				+4.0
110,111	+				+2.4
110,111	+				+4.3
110,112	-				+3.4
110,112	-				+3.8
110,112	-				+3.7
110,112	-				+3.8
110,112	-				+4.6
110,112	-				+2.5
110,112	-				+3.9
110,112	-				+3.4
110,112	-				+3.1
110,112	-				+3.6
110,112	-				+3.3
110,112	-				+3.7
110,112	-				+3.7
110,112	-				+2.5
110,112	-				+3.1
110,112	-				+3.6
110,112	-				+3.7
110,112	-				+3.5
110,112	-				+3.0
110,112	-				+3.9
110,198	+				+3.9
110,198	+				+3.5
110,198	+				+3.6
110,199	-				-2.2
110,199	-				+0.4
110,199	-				-1.8
110,206	+				+3.9
110,246	+				+3.5
110,247	-				-1.1
110,247	-				-0.2
110,247	-				+0.2
110,417	+		ABIE53_000102	0.35	+3.7
110,624	+		ABIE53_000102	0.77	+3.8
110,625	-		ABIE53_000102	0.77	+3.8
110,676	-		ABIE53_000102	0.88	+3.8