Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2635

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
3,289,002	+				+1.3
3,289,002	+				-1.1
3,289,002	+				+1.3
3,289,002	+				-1.1
3,289,003	-				+0.6
3,289,016	+				+0.7
3,289,017	-				+0.7
3,289,020	-				+0.5
3,289,020	-				+0.2
3,289,020	-				+0.8
3,289,039	-				-1.0
3,289,052	+				-0.1
3,289,054	+				+0.8
3,289,054	+				-0.9
3,289,054	+				-1.7
3,289,054	+				+0.9
3,289,055	-				-1.2
3,289,055	-				-1.2
3,289,055	-				+1.2
3,289,056	+				-1.0
3,289,058	+				+0.2
3,289,072	-				-1.5
3,289,126	+		BT2634	0.15	+1.2
3,289,129	-		BT2634	0.16	-1.9
3,289,129	-		BT2634	0.16	-1.6
3,289,152	-		BT2634	0.18	-2.5
3,289,238	+		BT2634	0.26	+1.2
3,289,317	+		BT2634	0.34	+0.5
3,289,318	-		BT2634	0.35	+0.2
3,289,318	-		BT2634	0.35	+1.0
3,289,320	-		BT2634	0.35	-1.0
3,289,327	-		BT2634	0.35	+1.0
3,289,334	+		BT2634	0.36	-0.1
3,289,335	-		BT2634	0.36	-0.4
3,289,361	+		BT2634	0.39	-0.2
3,289,361	+		BT2634	0.39	+0.5
3,289,375	+		BT2634	0.40	-0.6
3,289,412	+		BT2634	0.44	+1.0
3,289,412	+		BT2634	0.44	-1.1
3,289,413	-		BT2634	0.44	+1.3
3,289,418	+		BT2634	0.45	-0.6
3,289,418	+		BT2634	0.45	-1.8
3,289,418	+		BT2634	0.45	-1.0
3,289,419	-		BT2634	0.45	+1.1
3,289,419	-		BT2634	0.45	-1.1
3,289,423	-		BT2634	0.45	+0.8
3,289,464	-		BT2634	0.49	-0.1
3,289,465	+		BT2634	0.49	+0.3
3,289,477	-		BT2634	0.51	+0.2
3,289,487	-		BT2634	0.52	-1.0
3,289,504	-		BT2634	0.53	+1.6
3,289,575	+		BT2634	0.60	-1.0
3,289,620	-		BT2634	0.65	+1.6
3,289,661	+		BT2634	0.69	+0.1
3,289,661	+		BT2634	0.69	-1.1
3,289,673	-		BT2634	0.70	+0.5
3,289,725	-		BT2634	0.76	+0.4
3,289,743	+		BT2634	0.77	-0.9
3,289,743	+		BT2634	0.77	-0.2
3,289,744	-		BT2634	0.77	-0.0
3,289,745	+		BT2634	0.78	+0.6
3,289,746	-		BT2634	0.78	-0.5
3,289,746	-		BT2634	0.78	-0.6
3,289,787	+		BT2634	0.82	-1.1
3,289,800	-		BT2634	0.83	-1.1
3,289,840	+		BT2634	0.87	+0.8
3,289,841	-		BT2634	0.87	+0.6
3,289,841	-		BT2634	0.87	-0.7
3,289,847	+		BT2634	0.88	+0.5
3,289,849	+		BT2634	0.88	-0.4
3,289,849	+		BT2634	0.88	-1.5
3,289,849	+		BT2634	0.88	-2.4
3,289,849	+		BT2634	0.88	+1.0
3,289,849	+		BT2634	0.88	+0.2
3,289,850	-		BT2634	0.88	-1.2
3,289,874	+				+0.6
3,289,874	+				+0.7
3,289,903	-				-2.2
3,289,907	-				-1.5
3,289,907	-				+0.4
3,289,914	+				+0.1
3,289,918	+				+0.5
3,289,919	-				-0.0
3,289,934	-				+0.8
3,289,938	+				+1.0
3,289,968	-				-0.9
3,290,026	+		BT2635	0.23	+0.3
3,290,034	+		BT2635	0.26	+0.6
3,290,034	+		BT2635	0.26	+1.8
3,290,034	+		BT2635	0.26	+2.3
3,290,035	-		BT2635	0.26	+1.0
3,290,044	+		BT2635	0.30	-0.0
3,290,048	+		BT2635	0.31	-0.4
3,290,067	+		BT2635	0.38	+1.3
3,290,067	+		BT2635	0.38	+0.1
3,290,115	+		BT2635	0.56	-1.9
3,290,115	+		BT2635	0.56	-1.2
3,290,190	+		BT2635	0.84	+1.0
3,290,191	-		BT2635	0.84	-1.7
3,290,195	-		BT2635	0.86	+1.4
3,290,195	-		BT2635	0.86	+0.4
3,290,216	+				+0.1
3,290,217	-				+0.9
3,290,312	+				+0.4
3,290,313	-				-0.2
3,290,343	-				+0.6
3,290,369	+				-1.6
3,290,383	+		BT2636	0.12	+0.1
3,290,385	+		BT2636	0.13	-0.0
3,290,409	-		BT2636	0.20	-1.0
3,290,410	+		BT2636	0.20	+1.0
3,290,416	+		BT2636	0.22	+0.8
3,290,432	+		BT2636	0.26	+0.5
3,290,447	+		BT2636	0.30	+0.1
3,290,447	+		BT2636	0.30	-0.4
3,290,470	+		BT2636	0.37	+0.4
3,290,485	-		BT2636	0.41	-3.1
3,290,498	+		BT2636	0.45	+0.5
3,290,499	-		BT2636	0.45	-2.4
3,290,509	+		BT2636	0.48	-1.6
3,290,530	+		BT2636	0.54	-1.7
3,290,544	+		BT2636	0.57	+0.1
3,290,545	-		BT2636	0.58	+0.8
3,290,589	+		BT2636	0.70	+1.0
3,290,591	+		BT2636	0.71	-1.9
3,290,591	+		BT2636	0.71	+0.4
3,290,593	+		BT2636	0.71	-0.1
3,290,593	+		BT2636	0.71	+1.0
3,290,593	+		BT2636	0.71	-0.7
3,290,594	-		BT2636	0.71	-0.8
3,290,595	+		BT2636	0.72	+0.5
3,290,595	+		BT2636	0.72	+0.5
3,290,595	+		BT2636	0.72	-0.8
3,290,627	-		BT2636	0.81	-1.3
3,290,647	-		BT2636	0.86	-1.6
3,290,666	+				+1.0
3,290,681	+				-0.3
3,290,700	+				+0.3
3,290,701	-				-0.8
3,290,701	-				-2.6
3,290,702	+				-2.4
3,290,702	+				+0.3
3,290,702	+				+1.1
3,290,703	-				-0.2
3,290,712	+				+0.6
3,290,713	-				+0.8
3,290,713	-				-0.4
3,290,715	+				+1.2
3,290,749	+		BT2637	0.19	-2.0
3,290,749	+		BT2637	0.19	+0.5
3,290,750	-		BT2637	0.19	-0.7
3,290,780	-		BT2637	0.34	+0.5
3,290,846	-		BT2637	0.67	-1.2
3,290,846	-		BT2637	0.67	-0.2
3,290,870	-		BT2637	0.79	-2.2
3,290,884	-		BT2637	0.86	+0.2
3,290,892	-				-1.8
3,290,892	-				-0.6
3,290,892	-				-0.7
3,290,911	+				-1.3
3,290,915	-				+0.5
3,290,917	-				-0.0
3,290,955	+				+0.1
3,290,993	+				+0.5
3,290,994	-				+0.4
3,290,994	-				-0.5
3,290,994	-				+1.2
3,291,007	+				+1.3
3,291,018	+				+0.1
3,291,031	-				+0.2
3,291,045	+				+0.3
3,291,046	-				-0.4
3,291,050	-				-0.4
3,291,050	-				+0.2
3,291,054	+				+0.9
3,291,085	+		BT2638	0.20	+1.4
3,291,094	+		BT2638	0.23	+1.2
3,291,094	+		BT2638	0.23	-0.0
3,291,095	-		BT2638	0.23	+0.6
3,291,095	-		BT2638	0.23	-1.7
3,291,100	+		BT2638	0.25	+0.2
3,291,100	+		BT2638	0.25	-0.0
3,291,100	+		BT2638	0.25	-0.3
3,291,101	-		BT2638	0.26	+0.3
3,291,101	-		BT2638	0.26	-0.6
3,291,114	+		BT2638	0.30	-2.2
3,291,137	+		BT2638	0.39	-1.5
3,291,137	+		BT2638	0.39	+0.7
3,291,137	+		BT2638	0.39	+0.3
3,291,138	-		BT2638	0.39	-1.9
3,291,138	-		BT2638	0.39	-1.2
3,291,139	+		BT2638	0.40	+0.1
3,291,140	-		BT2638	0.40	-0.5
3,291,140	-				+2.8
3,291,140	-		BT2638	0.40	-0.9
3,291,195	+		BT2638	0.60	-2.3
3,291,198	-		BT2638	0.61	-1.2
3,291,210	+		BT2638	0.66	-1.0
3,291,210	+		BT2638	0.66	-1.6
3,291,211	-		BT2638	0.66	-0.8
3,291,228	+		BT2638	0.72	-0.4
3,291,229	-		BT2638	0.73	-0.1
3,291,230	+		BT2638	0.73	+2.4
3,291,230	+		BT2638	0.73	+1.3