Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18740 and RALBFv3_RS18745 are separated by 140 nucleotides RALBFv3_RS18745 and RALBFv3_RS18750 overlap by 4 nucleotides RALBFv3_RS18750 and RALBFv3_RS18755 overlap by 4 nucleotides
RALBFv3_RS18740: RALBFv3_RS18740 - potassium transporter Kup, at 746,495 to 748,390
_RS18740
RALBFv3_RS18745: RALBFv3_RS18745 - histidine kinase, at 748,531 to 750,135
_RS18745
RALBFv3_RS18750: RALBFv3_RS18750 - sulfurtransferase FdhD, at 750,132 to 750,950
_RS18750
RALBFv3_RS18755: RALBFv3_RS18755 - hypothetical protein, at 750,947 to 751,195
_RS18755
Position (kb) 748
749
750
751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 747.548 kb on + strand, within RALBFv3_RS18740 at 747.548 kb on + strand, within RALBFv3_RS18740 at 747.548 kb on + strand, within RALBFv3_RS18740 at 747.548 kb on + strand, within RALBFv3_RS18740 at 747.549 kb on - strand, within RALBFv3_RS18740 at 747.549 kb on - strand, within RALBFv3_RS18740 at 747.953 kb on + strand, within RALBFv3_RS18740 at 747.954 kb on - strand, within RALBFv3_RS18740 at 747.954 kb on - strand, within RALBFv3_RS18740 at 748.067 kb on + strand, within RALBFv3_RS18740 at 748.071 kb on + strand, within RALBFv3_RS18740 at 748.072 kb on - strand, within RALBFv3_RS18740 at 748.072 kb on - strand, within RALBFv3_RS18740 at 748.114 kb on + strand, within RALBFv3_RS18740 at 748.118 kb on + strand, within RALBFv3_RS18740 at 748.118 kb on + strand, within RALBFv3_RS18740 at 748.388 kb on + strand at 748.389 kb on - strand at 748.398 kb on + strand at 748.412 kb on + strand at 748.496 kb on - strand at 749.223 kb on + strand, within RALBFv3_RS18745 at 749.602 kb on + strand, within RALBFv3_RS18745 at 749.602 kb on + strand, within RALBFv3_RS18745 at 749.603 kb on - strand, within RALBFv3_RS18745 at 749.603 kb on - strand, within RALBFv3_RS18745 at 749.791 kb on + strand, within RALBFv3_RS18745 at 749.792 kb on - strand, within RALBFv3_RS18745 at 749.792 kb on - strand, within RALBFv3_RS18745 at 749.792 kb on - strand, within RALBFv3_RS18745 at 750.110 kb on - strand at 750.391 kb on - strand, within RALBFv3_RS18750
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 747,548 + RALBFv3_RS18740 0.56 -0.0 747,548 + RALBFv3_RS18740 0.56 -0.0 747,548 + RALBFv3_RS18740 0.56 +0.9 747,548 + RALBFv3_RS18740 0.56 +0.2 747,549 - RALBFv3_RS18740 0.56 +0.3 747,549 - RALBFv3_RS18740 0.56 -2.1 747,953 + RALBFv3_RS18740 0.77 +0.5 747,954 - RALBFv3_RS18740 0.77 -0.6 747,954 - RALBFv3_RS18740 0.77 -0.3 748,067 + RALBFv3_RS18740 0.83 +0.3 748,071 + RALBFv3_RS18740 0.83 +0.1 748,072 - RALBFv3_RS18740 0.83 +0.3 748,072 - RALBFv3_RS18740 0.83 -1.2 748,114 + RALBFv3_RS18740 0.85 -0.2 748,118 + RALBFv3_RS18740 0.86 +0.6 748,118 + RALBFv3_RS18740 0.86 -0.0 748,388 + +2.3 748,389 - -0.3 748,398 + +0.4 748,412 + +1.0 748,496 - -0.2 749,223 + RALBFv3_RS18745 0.43 +0.9 749,602 + RALBFv3_RS18745 0.67 -0.1 749,602 + RALBFv3_RS18745 0.67 -2.9 749,603 - RALBFv3_RS18745 0.67 -0.7 749,603 - RALBFv3_RS18745 0.67 +0.1 749,791 + RALBFv3_RS18745 0.79 +0.3 749,792 - RALBFv3_RS18745 0.79 -0.6 749,792 - RALBFv3_RS18745 0.79 -0.4 749,792 - RALBFv3_RS18745 0.79 -0.4 750,110 - +0.3 750,391 - RALBFv3_RS18750 0.32 -0.8
Or see this region's nucleotide sequence