Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17030 and RALBFv3_RS17035 are separated by 122 nucleotides RALBFv3_RS17035 and RALBFv3_RS17040 are separated by 255 nucleotides
RALBFv3_RS17030: RALBFv3_RS17030 - tartrate dehydrogenase, at 307,733 to 308,818
_RS17030
RALBFv3_RS17035: RALBFv3_RS17035 - LysR family transcriptional regulator, at 308,941 to 309,870
_RS17035
RALBFv3_RS17040: RALBFv3_RS17040 - NAD(P)-dependent oxidoreductase, at 310,126 to 310,860
_RS17040
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 308.407 kb on - strand, within RALBFv3_RS17030 at 308.518 kb on - strand, within RALBFv3_RS17030 at 308.653 kb on + strand, within RALBFv3_RS17030 at 308.653 kb on + strand, within RALBFv3_RS17030 at 308.654 kb on - strand, within RALBFv3_RS17030 at 308.654 kb on - strand, within RALBFv3_RS17030 at 308.673 kb on + strand, within RALBFv3_RS17030 at 308.673 kb on + strand, within RALBFv3_RS17030 at 308.673 kb on + strand, within RALBFv3_RS17030 at 308.808 kb on + strand at 308.809 kb on - strand at 309.036 kb on + strand, within RALBFv3_RS17035 at 309.036 kb on + strand, within RALBFv3_RS17035 at 309.037 kb on - strand, within RALBFv3_RS17035 at 309.037 kb on - strand, within RALBFv3_RS17035 at 309.037 kb on - strand, within RALBFv3_RS17035 at 309.271 kb on - strand, within RALBFv3_RS17035 at 309.292 kb on + strand, within RALBFv3_RS17035 at 309.292 kb on + strand, within RALBFv3_RS17035 at 309.293 kb on - strand, within RALBFv3_RS17035 at 309.463 kb on + strand, within RALBFv3_RS17035 at 309.513 kb on + strand, within RALBFv3_RS17035 at 309.514 kb on - strand, within RALBFv3_RS17035 at 309.514 kb on - strand, within RALBFv3_RS17035 at 309.514 kb on - strand, within RALBFv3_RS17035 at 309.514 kb on - strand, within RALBFv3_RS17035 at 309.548 kb on - strand, within RALBFv3_RS17035 at 309.548 kb on - strand, within RALBFv3_RS17035 at 309.548 kb on - strand, within RALBFv3_RS17035 at 309.548 kb on - strand, within RALBFv3_RS17035 at 309.555 kb on - strand, within RALBFv3_RS17035 at 309.706 kb on + strand, within RALBFv3_RS17035 at 309.745 kb on + strand, within RALBFv3_RS17035 at 309.746 kb on - strand, within RALBFv3_RS17035 at 309.769 kb on + strand, within RALBFv3_RS17035 at 309.769 kb on + strand, within RALBFv3_RS17035 at 309.769 kb on + strand, within RALBFv3_RS17035 at 309.769 kb on + strand, within RALBFv3_RS17035 at 309.769 kb on + strand, within RALBFv3_RS17035 at 309.769 kb on + strand, within RALBFv3_RS17035 at 309.769 kb on + strand, within RALBFv3_RS17035 at 309.770 kb on - strand, within RALBFv3_RS17035 at 309.770 kb on - strand, within RALBFv3_RS17035 at 309.770 kb on - strand, within RALBFv3_RS17035 at 309.770 kb on - strand, within RALBFv3_RS17035 at 309.778 kb on + strand at 309.779 kb on - strand at 309.779 kb on - strand at 309.827 kb on - strand at 309.827 kb on - strand at 309.827 kb on - strand at 309.892 kb on + strand at 309.960 kb on - strand at 309.960 kb on - strand at 310.115 kb on + strand at 310.116 kb on - strand at 310.116 kb on - strand at 310.199 kb on + strand at 310.199 kb on + strand at 310.200 kb on - strand, within RALBFv3_RS17040 at 310.200 kb on - strand, within RALBFv3_RS17040 at 310.200 kb on - strand, within RALBFv3_RS17040 at 310.276 kb on + strand, within RALBFv3_RS17040 at 310.276 kb on + strand, within RALBFv3_RS17040 at 310.277 kb on - strand, within RALBFv3_RS17040 at 310.378 kb on + strand, within RALBFv3_RS17040 at 310.378 kb on + strand, within RALBFv3_RS17040 at 310.378 kb on + strand, within RALBFv3_RS17040 at 310.378 kb on + strand, within RALBFv3_RS17040 at 310.378 kb on + strand, within RALBFv3_RS17040 at 310.379 kb on - strand, within RALBFv3_RS17040 at 310.379 kb on - strand, within RALBFv3_RS17040 at 310.379 kb on - strand, within RALBFv3_RS17040 at 310.380 kb on - strand, within RALBFv3_RS17040 at 310.385 kb on + strand, within RALBFv3_RS17040 at 310.385 kb on + strand, within RALBFv3_RS17040 at 310.385 kb on + strand, within RALBFv3_RS17040 at 310.401 kb on - strand, within RALBFv3_RS17040 at 310.425 kb on - strand, within RALBFv3_RS17040 at 310.500 kb on + strand, within RALBFv3_RS17040 at 310.501 kb on - strand, within RALBFv3_RS17040 at 310.501 kb on - strand, within RALBFv3_RS17040 at 310.501 kb on - strand, within RALBFv3_RS17040 at 310.860 kb on + strand at 310.860 kb on + strand at 310.860 kb on + strand at 310.860 kb on + strand at 310.861 kb on - strand at 310.861 kb on - strand at 310.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 308,407 - RALBFv3_RS17030 0.62 -0.5 308,518 - RALBFv3_RS17030 0.72 +0.6 308,653 + RALBFv3_RS17030 0.85 -0.6 308,653 + RALBFv3_RS17030 0.85 -0.3 308,654 - RALBFv3_RS17030 0.85 +0.7 308,654 - RALBFv3_RS17030 0.85 -2.0 308,673 + RALBFv3_RS17030 0.87 +0.2 308,673 + RALBFv3_RS17030 0.87 +0.8 308,673 + RALBFv3_RS17030 0.87 -0.7 308,808 + -0.5 308,809 - -0.9 309,036 + RALBFv3_RS17035 0.10 +0.4 309,036 + RALBFv3_RS17035 0.10 -0.4 309,037 - RALBFv3_RS17035 0.10 -0.4 309,037 - RALBFv3_RS17035 0.10 +1.3 309,037 - RALBFv3_RS17035 0.10 +0.0 309,271 - RALBFv3_RS17035 0.35 -0.5 309,292 + RALBFv3_RS17035 0.38 -0.0 309,292 + RALBFv3_RS17035 0.38 -0.4 309,293 - RALBFv3_RS17035 0.38 -0.8 309,463 + RALBFv3_RS17035 0.56 +0.6 309,513 + RALBFv3_RS17035 0.62 -0.1 309,514 - RALBFv3_RS17035 0.62 -0.5 309,514 - RALBFv3_RS17035 0.62 -1.8 309,514 - RALBFv3_RS17035 0.62 -0.2 309,514 - RALBFv3_RS17035 0.62 -1.0 309,548 - RALBFv3_RS17035 0.65 -0.4 309,548 - RALBFv3_RS17035 0.65 +0.6 309,548 - RALBFv3_RS17035 0.65 -0.9 309,548 - RALBFv3_RS17035 0.65 -0.5 309,555 - RALBFv3_RS17035 0.66 -0.0 309,706 + RALBFv3_RS17035 0.82 +0.0 309,745 + RALBFv3_RS17035 0.86 -1.0 309,746 - RALBFv3_RS17035 0.87 -0.5 309,769 + RALBFv3_RS17035 0.89 -0.9 309,769 + RALBFv3_RS17035 0.89 +0.2 309,769 + RALBFv3_RS17035 0.89 +1.9 309,769 + RALBFv3_RS17035 0.89 +0.5 309,769 + RALBFv3_RS17035 0.89 +0.1 309,769 + RALBFv3_RS17035 0.89 -2.6 309,769 + RALBFv3_RS17035 0.89 +0.9 309,770 - RALBFv3_RS17035 0.89 -0.1 309,770 - RALBFv3_RS17035 0.89 +0.3 309,770 - RALBFv3_RS17035 0.89 +0.7 309,770 - RALBFv3_RS17035 0.89 -0.2 309,778 + -1.0 309,779 - -0.5 309,779 - +0.6 309,827 - +0.5 309,827 - -0.1 309,827 - -0.1 309,892 + +0.7 309,960 - -0.1 309,960 - +2.0 310,115 + -0.0 310,116 - -0.9 310,116 - -0.0 310,199 + +0.4 310,199 + -0.2 310,200 - RALBFv3_RS17040 0.10 -1.4 310,200 - RALBFv3_RS17040 0.10 -0.1 310,200 - RALBFv3_RS17040 0.10 -0.0 310,276 + RALBFv3_RS17040 0.20 -1.8 310,276 + RALBFv3_RS17040 0.20 -0.6 310,277 - RALBFv3_RS17040 0.21 -1.1 310,378 + RALBFv3_RS17040 0.34 -1.1 310,378 + RALBFv3_RS17040 0.34 -0.2 310,378 + RALBFv3_RS17040 0.34 +0.3 310,378 + RALBFv3_RS17040 0.34 +1.8 310,378 + RALBFv3_RS17040 0.34 -1.0 310,379 - RALBFv3_RS17040 0.34 +1.7 310,379 - RALBFv3_RS17040 0.34 -0.3 310,379 - RALBFv3_RS17040 0.34 -1.3 310,380 - RALBFv3_RS17040 0.35 +0.7 310,385 + RALBFv3_RS17040 0.35 +0.6 310,385 + RALBFv3_RS17040 0.35 -0.3 310,385 + RALBFv3_RS17040 0.35 -0.3 310,401 - RALBFv3_RS17040 0.37 +0.5 310,425 - RALBFv3_RS17040 0.41 +1.6 310,500 + RALBFv3_RS17040 0.51 -0.9 310,501 - RALBFv3_RS17040 0.51 -2.7 310,501 - RALBFv3_RS17040 0.51 +0.4 310,501 - RALBFv3_RS17040 0.51 -0.6 310,860 + +0.4 310,860 + -0.1 310,860 + +0.6 310,860 + -0.3 310,861 - -0.5 310,861 - -0.1 310,861 - +0.4
Or see this region's nucleotide sequence