Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS15250 and RALBFv3_RS15255 are separated by 370 nucleotides RALBFv3_RS15255 and RALBFv3_RS15260 are separated by 43 nucleotides RALBFv3_RS15260 and RALBFv3_RS15265 overlap by 4 nucleotides RALBFv3_RS15265 and RALBFv3_RS15270 overlap by 8 nucleotides
RALBFv3_RS15250: RALBFv3_RS15250 - BAX inhibitor (BI)-1/YccA family protein, at 3,320,969 to 3,321,670
_RS15250
RALBFv3_RS15255: RALBFv3_RS15255 - nucleoside-diphosphate kinase, at 3,322,041 to 3,322,466
_RS15255
RALBFv3_RS15260: RALBFv3_RS15260 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 3,322,510 to 3,323,661
_RS15260
RALBFv3_RS15265: RALBFv3_RS15265 - type IV pilus biogenesis/stability protein PilW, at 3,323,658 to 3,324,458
_RS15265
RALBFv3_RS15270: RALBFv3_RS15270 - DUF4115 domain-containing protein, at 3,324,451 to 3,325,554
_RS15270
Position (kb) 3322
3323
3324 Strain fitness (log2 ratio) -1
0
1 at 3321.865 kb on - strand at 3321.865 kb on - strand at 3322.455 kb on + strand at 3322.455 kb on + strand at 3322.818 kb on + strand, within RALBFv3_RS15260 at 3324.018 kb on + strand, within RALBFv3_RS15265
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 3,321,865 - +0.1 3,321,865 - -0.3 3,322,455 + +0.5 3,322,455 + -0.3 3,322,818 + RALBFv3_RS15260 0.27 -0.9 3,324,018 + RALBFv3_RS15265 0.45 +0.8
Or see this region's nucleotide sequence