Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS05865

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS05860 and RALBFv3_RS05865 are separated by 541 nucleotidesRALBFv3_RS05865 and RALBFv3_RS05870 are separated by 75 nucleotides RALBFv3_RS05860: RALBFv3_RS05860 - LysR family transcriptional regulator, at 1,304,508 to 1,305,551 _RS05860 RALBFv3_RS05865: RALBFv3_RS05865 - type I glyceraldehyde-3-phosphate dehydrogenase, at 1,306,093 to 1,307,091 _RS05865 RALBFv3_RS05870: RALBFv3_RS05870 - transketolase, at 1,307,167 to 1,309,194 _RS05870 Position (kb) 1306 1307 1308Strain fitness (log2 ratio) -1 0 1 2 3 4at 1305.484 kb on + strandat 1305.484 kb on + strandat 1305.484 kb on + strandat 1305.484 kb on + strandat 1305.484 kb on + strandat 1305.484 kb on + strandat 1305.485 kb on - strandat 1305.485 kb on - strandat 1305.485 kb on - strandat 1305.489 kb on - strandat 1305.501 kb on - strandat 1305.774 kb on - strandat 1305.809 kb on - strandat 1305.877 kb on - strandat 1306.095 kb on - strandat 1306.095 kb on - strandat 1306.095 kb on - strandat 1306.095 kb on - strandat 1306.095 kb on - strandat 1307.161 kb on - strandat 1307.161 kb on - strandat 1307.161 kb on - strandat 1307.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,305,484 + +3.7
1,305,484 + +3.9
1,305,484 + +3.7
1,305,484 + +3.8
1,305,484 + +2.0
1,305,484 + +3.5
1,305,485 - +3.7
1,305,485 - +3.7
1,305,485 - +3.4
1,305,489 - +3.1
1,305,501 - +3.8
1,305,774 - +1.3
1,305,809 - -0.7
1,305,877 - -0.6
1,306,095 - +1.3
1,306,095 - +2.0
1,306,095 - +0.1
1,306,095 - +0.9
1,306,095 - +0.9
1,307,161 - +0.4
1,307,161 - +0.8
1,307,161 - +0.9
1,307,169 - +0.6

Or see this region's nucleotide sequence