Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03345 and RALBFv3_RS03350 are separated by 11 nucleotides RALBFv3_RS03350 and RALBFv3_RS03355 are separated by 6 nucleotides RALBFv3_RS03355 and RALBFv3_RS03360 are separated by 89 nucleotides RALBFv3_RS03360 and RALBFv3_RS03365 are separated by 103 nucleotides
RALBFv3_RS03345: RALBFv3_RS03345 - ribonuclease PH, at 730,330 to 731,046
_RS03345
RALBFv3_RS03350: RALBFv3_RS03350 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 731,058 to 731,663
_RS03350
RALBFv3_RS03355: RALBFv3_RS03355 - oxygen-independent coproporphyrinogen III oxidase-like protein, at 731,670 to 732,947
_RS03355
RALBFv3_RS03360: RALBFv3_RS03360 - tRNA-Ser, at 733,037 to 733,126
_RS03360
RALBFv3_RS03365: RALBFv3_RS03365 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 733,230 to 734,996
_RS03365
Position (kb) 731
732
733 Strain fitness (log2 ratio) -1
0
1 at 730.741 kb on + strand, within RALBFv3_RS03345 at 730.858 kb on + strand, within RALBFv3_RS03345 at 731.319 kb on + strand, within RALBFv3_RS03350 at 731.319 kb on + strand, within RALBFv3_RS03350 at 731.412 kb on + strand, within RALBFv3_RS03350 at 731.412 kb on + strand, within RALBFv3_RS03350 at 731.412 kb on + strand, within RALBFv3_RS03350 at 731.430 kb on + strand, within RALBFv3_RS03350 at 731.430 kb on + strand, within RALBFv3_RS03350 at 731.430 kb on + strand, within RALBFv3_RS03350 at 731.431 kb on - strand, within RALBFv3_RS03350 at 731.847 kb on + strand, within RALBFv3_RS03355 at 731.967 kb on - strand, within RALBFv3_RS03355 at 731.967 kb on - strand, within RALBFv3_RS03355 at 732.363 kb on + strand, within RALBFv3_RS03355 at 732.364 kb on - strand, within RALBFv3_RS03355 at 732.390 kb on + strand, within RALBFv3_RS03355 at 732.391 kb on - strand, within RALBFv3_RS03355 at 732.562 kb on - strand, within RALBFv3_RS03355 at 732.648 kb on + strand, within RALBFv3_RS03355 at 732.648 kb on + strand, within RALBFv3_RS03355 at 732.649 kb on - strand, within RALBFv3_RS03355 at 732.649 kb on - strand, within RALBFv3_RS03355 at 733.161 kb on - strand at 733.240 kb on + strand at 733.240 kb on + strand at 733.240 kb on + strand at 733.241 kb on - strand at 733.295 kb on - strand at 733.295 kb on - strand at 733.798 kb on + strand, within RALBFv3_RS03365
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 730,741 + RALBFv3_RS03345 0.57 -0.7 730,858 + RALBFv3_RS03345 0.74 +0.6 731,319 + RALBFv3_RS03350 0.43 -0.6 731,319 + RALBFv3_RS03350 0.43 -0.1 731,412 + RALBFv3_RS03350 0.58 +0.5 731,412 + RALBFv3_RS03350 0.58 -0.7 731,412 + RALBFv3_RS03350 0.58 +0.2 731,430 + RALBFv3_RS03350 0.61 +0.9 731,430 + RALBFv3_RS03350 0.61 +0.8 731,430 + RALBFv3_RS03350 0.61 -0.2 731,431 - RALBFv3_RS03350 0.62 +0.5 731,847 + RALBFv3_RS03355 0.14 -1.5 731,967 - RALBFv3_RS03355 0.23 +0.2 731,967 - RALBFv3_RS03355 0.23 -0.9 732,363 + RALBFv3_RS03355 0.54 +0.4 732,364 - RALBFv3_RS03355 0.54 -0.7 732,390 + RALBFv3_RS03355 0.56 +0.9 732,391 - RALBFv3_RS03355 0.56 -1.2 732,562 - RALBFv3_RS03355 0.70 -0.4 732,648 + RALBFv3_RS03355 0.77 +0.0 732,648 + RALBFv3_RS03355 0.77 -0.1 732,649 - RALBFv3_RS03355 0.77 +0.1 732,649 - RALBFv3_RS03355 0.77 +0.6 733,161 - +0.4 733,240 + +0.5 733,240 + +0.1 733,240 + +0.6 733,241 - +0.8 733,295 - -0.4 733,295 - -0.8 733,798 + RALBFv3_RS03365 0.32 -0.0
Or see this region's nucleotide sequence