Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS09005 and MMP_RS04100 are separated by 70 nucleotides MMP_RS04100 and MMP_RS04105 are separated by 49 nucleotides
MMP_RS09005: MMP_RS09005 - hypothetical protein, at 777,583 to 777,738
_RS09005
MMP_RS04100: MMP_RS04100 - hypothetical protein, at 777,809 to 777,994
_RS04100
MMP_RS04105: MMP_RS04105 - MarR family transcriptional regulator, at 778,044 to 778,538
_RS04105
Position (kb) 777
778 Strain fitness (log2 ratio) -2
-1
0
1
2 at 776.718 kb on - strand at 776.754 kb on + strand at 776.803 kb on + strand at 776.817 kb on + strand at 777.004 kb on - strand at 777.015 kb on - strand at 777.039 kb on + strand at 777.044 kb on + strand at 777.148 kb on + strand at 777.150 kb on - strand at 777.242 kb on - strand at 777.352 kb on - strand at 777.592 kb on - strand at 777.791 kb on - strand at 777.875 kb on - strand, within MMP_RS04100 at 777.876 kb on + strand, within MMP_RS04100 at 777.964 kb on + strand, within MMP_RS04100 at 777.986 kb on + strand at 778.032 kb on + strand at 778.070 kb on - strand at 778.104 kb on - strand, within MMP_RS04105 at 778.201 kb on - strand, within MMP_RS04105 at 778.207 kb on - strand, within MMP_RS04105 at 778.208 kb on + strand, within MMP_RS04105 at 778.232 kb on - strand, within MMP_RS04105 at 778.263 kb on - strand, within MMP_RS04105 at 778.331 kb on - strand, within MMP_RS04105 at 778.352 kb on - strand, within MMP_RS04105 at 778.353 kb on + strand, within MMP_RS04105 at 778.417 kb on - strand, within MMP_RS04105 at 778.418 kb on + strand, within MMP_RS04105 at 778.437 kb on + strand, within MMP_RS04105 at 778.495 kb on - strand at 778.499 kb on - strand at 778.499 kb on - strand at 778.499 kb on - strand at 778.500 kb on + strand at 778.500 kb on + strand at 778.500 kb on + strand at 778.538 kb on - strand at 778.542 kb on - strand at 778.542 kb on - strand at 778.543 kb on + strand at 778.556 kb on - strand at 778.595 kb on - strand at 778.595 kb on - strand at 778.632 kb on - strand at 778.635 kb on - strand at 778.636 kb on + strand at 778.641 kb on - strand at 778.641 kb on - strand at 778.644 kb on - strand at 778.669 kb on - strand at 778.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations remove 776,718 - +0.8 776,754 + +2.2 776,803 + +0.5 776,817 + +0.3 777,004 - +1.3 777,015 - +0.4 777,039 + -0.6 777,044 + -0.7 777,148 + -0.5 777,150 - +0.8 777,242 - +1.1 777,352 - +0.1 777,592 - -1.1 777,791 - +1.0 777,875 - MMP_RS04100 0.35 +1.3 777,876 + MMP_RS04100 0.36 +0.9 777,964 + MMP_RS04100 0.83 +0.1 777,986 + +0.5 778,032 + +0.5 778,070 - +0.1 778,104 - MMP_RS04105 0.12 +0.4 778,201 - MMP_RS04105 0.32 +0.7 778,207 - MMP_RS04105 0.33 +0.3 778,208 + MMP_RS04105 0.33 -2.1 778,232 - MMP_RS04105 0.38 -0.8 778,263 - MMP_RS04105 0.44 +0.1 778,331 - MMP_RS04105 0.58 +0.5 778,352 - MMP_RS04105 0.62 +0.1 778,353 + MMP_RS04105 0.62 -0.1 778,417 - MMP_RS04105 0.75 +0.2 778,418 + MMP_RS04105 0.76 +1.0 778,437 + MMP_RS04105 0.79 +0.3 778,495 - +1.2 778,499 - -0.1 778,499 - -0.2 778,499 - +1.0 778,500 + +0.2 778,500 + +1.1 778,500 + -0.7 778,538 - -0.5 778,542 - +0.9 778,542 - +1.3 778,543 + +1.0 778,556 - -0.3 778,595 - +0.4 778,595 - +0.0 778,632 - +2.3 778,635 - -0.2 778,636 + +0.1 778,641 - +0.0 778,641 - -1.0 778,644 - +0.4 778,669 - +0.1 778,690 - -0.1
Or see this region's nucleotide sequence