Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02710 and MMP_RS02715 are separated by 76 nucleotides MMP_RS02715 and MMP_RS02720 are separated by 238 nucleotides
MMP_RS02710: MMP_RS02710 - formylmethanofuran dehydrogenase subunit B, at 517,360 to 518,697
_RS02710
MMP_RS02715: MMP_RS02715 - molybdopterin molybdotransferase MoeA, at 518,774 to 519,895
_RS02715
MMP_RS02720: MMP_RS02720 - molybdate ABC transporter substrate-binding protein, at 520,134 to 520,910
_RS02720
Position (kb) 518
519
520 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 517.802 kb on - strand, within MMP_RS02710 at 517.803 kb on + strand, within MMP_RS02710 at 517.806 kb on - strand, within MMP_RS02710 at 517.859 kb on + strand, within MMP_RS02710 at 517.962 kb on + strand, within MMP_RS02710 at 517.973 kb on - strand, within MMP_RS02710 at 518.065 kb on + strand, within MMP_RS02710 at 518.205 kb on + strand, within MMP_RS02710 at 518.333 kb on + strand, within MMP_RS02710 at 518.333 kb on + strand, within MMP_RS02710 at 518.397 kb on + strand, within MMP_RS02710 at 518.439 kb on - strand, within MMP_RS02710 at 518.443 kb on - strand, within MMP_RS02710 at 518.443 kb on - strand, within MMP_RS02710 at 518.446 kb on + strand, within MMP_RS02710 at 518.580 kb on + strand at 518.582 kb on + strand at 518.582 kb on + strand at 518.635 kb on + strand at 518.712 kb on + strand at 518.721 kb on - strand at 518.721 kb on - strand at 518.726 kb on - strand at 518.781 kb on - strand at 518.782 kb on + strand at 519.010 kb on - strand, within MMP_RS02715 at 519.010 kb on - strand, within MMP_RS02715 at 519.018 kb on + strand, within MMP_RS02715 at 519.037 kb on + strand, within MMP_RS02715 at 519.049 kb on - strand, within MMP_RS02715 at 519.077 kb on - strand, within MMP_RS02715 at 519.077 kb on - strand, within MMP_RS02715 at 519.078 kb on + strand, within MMP_RS02715 at 519.080 kb on + strand, within MMP_RS02715 at 519.080 kb on + strand, within MMP_RS02715 at 519.386 kb on - strand, within MMP_RS02715 at 519.410 kb on - strand, within MMP_RS02715 at 519.468 kb on + strand, within MMP_RS02715 at 519.468 kb on + strand, within MMP_RS02715 at 519.532 kb on - strand, within MMP_RS02715 at 519.593 kb on - strand, within MMP_RS02715 at 519.593 kb on - strand, within MMP_RS02715 at 519.831 kb on + strand at 519.918 kb on - strand at 519.976 kb on + strand at 520.013 kb on - strand at 520.013 kb on - strand at 520.014 kb on + strand at 520.045 kb on - strand at 520.045 kb on - strand at 520.046 kb on + strand at 520.046 kb on + strand at 520.050 kb on + strand at 520.526 kb on + strand, within MMP_RS02720 at 520.678 kb on + strand, within MMP_RS02720 at 520.711 kb on - strand, within MMP_RS02720 at 520.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations remove 517,802 - MMP_RS02710 0.33 +0.4 517,803 + MMP_RS02710 0.33 +0.9 517,806 - MMP_RS02710 0.33 +0.9 517,859 + MMP_RS02710 0.37 +0.0 517,962 + MMP_RS02710 0.45 -0.2 517,973 - MMP_RS02710 0.46 +1.4 518,065 + MMP_RS02710 0.53 +0.9 518,205 + MMP_RS02710 0.63 +0.2 518,333 + MMP_RS02710 0.73 +0.7 518,333 + MMP_RS02710 0.73 +0.1 518,397 + MMP_RS02710 0.78 -1.4 518,439 - MMP_RS02710 0.81 +0.4 518,443 - MMP_RS02710 0.81 +0.4 518,443 - MMP_RS02710 0.81 -0.0 518,446 + MMP_RS02710 0.81 +0.4 518,580 + +0.5 518,582 + +0.7 518,582 + +0.1 518,635 + +0.3 518,712 + -0.1 518,721 - +0.3 518,721 - +1.1 518,726 - +0.9 518,781 - +0.8 518,782 + -1.8 519,010 - MMP_RS02715 0.21 -0.5 519,010 - MMP_RS02715 0.21 -1.1 519,018 + MMP_RS02715 0.22 -1.5 519,037 + MMP_RS02715 0.23 -1.1 519,049 - MMP_RS02715 0.25 -1.6 519,077 - MMP_RS02715 0.27 -0.4 519,077 - MMP_RS02715 0.27 -2.6 519,078 + MMP_RS02715 0.27 -0.1 519,080 + MMP_RS02715 0.27 +0.0 519,080 + MMP_RS02715 0.27 +0.4 519,386 - MMP_RS02715 0.55 -2.9 519,410 - MMP_RS02715 0.57 -1.2 519,468 + MMP_RS02715 0.62 -0.5 519,468 + MMP_RS02715 0.62 -1.1 519,532 - MMP_RS02715 0.68 -0.9 519,593 - MMP_RS02715 0.73 -1.0 519,593 - MMP_RS02715 0.73 -0.7 519,831 + -0.4 519,918 - -0.4 519,976 + -4.8 520,013 - +0.1 520,013 - +0.1 520,014 + +0.9 520,045 - +0.6 520,045 - +1.3 520,046 + +1.4 520,046 + -0.5 520,050 + +0.1 520,526 + MMP_RS02720 0.50 -0.1 520,678 + MMP_RS02720 0.70 -0.5 520,711 - MMP_RS02720 0.74 +0.9 520,852 + +1.0
Or see this region's nucleotide sequence