Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00165

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00160 and MMP_RS00165 are separated by 467 nucleotidesMMP_RS00165 and MMP_RS00170 are separated by 56 nucleotides MMP_RS00160: MMP_RS00160 - DNA polymerase II large subunit, at 33,256 to 36,651 _RS00160 MMP_RS00165: MMP_RS00165 - 5S ribosomal RNA, at 37,119 to 37,233 _RS00165 MMP_RS00170: MMP_RS00170 - 23S ribosomal RNA, at 37,290 to 40,257 _RS00170 Position (kb) 37 38Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 36.578 kb on - strandat 36.590 kb on + strandat 36.713 kb on - strandat 36.713 kb on - strandat 36.713 kb on - strandat 36.714 kb on + strandat 36.714 kb on + strandat 36.714 kb on + strandat 36.714 kb on + strandat 36.729 kb on + strandat 36.744 kb on + strandat 36.750 kb on - strandat 36.751 kb on + strandat 36.760 kb on - strandat 36.760 kb on - strandat 36.976 kb on - strandat 36.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanolamine_timecourse1; 20 generations
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36,578 - -2.8
36,590 + -2.5
36,713 - +0.1
36,713 - +1.0
36,713 - -0.7
36,714 + +1.4
36,714 + +0.3
36,714 + +0.3
36,714 + +0.5
36,729 + +0.4
36,744 + +0.1
36,750 - -0.8
36,751 + +0.9
36,760 - -0.6
36,760 - -0.1
36,976 - -4.1
36,977 + -3.0

Or see this region's nucleotide sequence