Strain Fitness in Rahnella sp. WP5 around EX31_RS12535

Experiment: L-Serine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12525 and EX31_RS12530 are separated by 65 nucleotidesEX31_RS12530 and EX31_RS12535 are separated by 9 nucleotidesEX31_RS12535 and EX31_RS12540 are separated by 30 nucleotidesEX31_RS12540 and EX31_RS12545 are separated by 65 nucleotides EX31_RS12525: EX31_RS12525 - monofunctional biosynthetic peptidoglycan transglycosylase, at 176,880 to 177,602 _RS12525 EX31_RS12530: EX31_RS12530 - divisome-associated lipoprotein YraP, at 177,668 to 178,243 _RS12530 EX31_RS12535: EX31_RS12535 - DnaA initiator-associating protein DiaA, at 178,253 to 178,843 _RS12535 EX31_RS12540: EX31_RS12540 - YraN family protein, at 178,874 to 179,242 _RS12540 EX31_RS12545: EX31_RS12545 - penicillin-binding protein activator, at 179,308 to 181,344 _RS12545 Position (kb) 178 179Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 177.284 kb on + strand, within EX31_RS12525at 177.284 kb on + strand, within EX31_RS12525at 177.285 kb on - strand, within EX31_RS12525at 177.354 kb on + strand, within EX31_RS12525at 177.354 kb on + strand, within EX31_RS12525at 177.354 kb on + strand, within EX31_RS12525at 177.355 kb on - strand, within EX31_RS12525at 177.355 kb on - strand, within EX31_RS12525at 177.422 kb on + strand, within EX31_RS12525at 177.516 kb on + strand, within EX31_RS12525at 177.516 kb on + strand, within EX31_RS12525at 177.516 kb on + strand, within EX31_RS12525at 177.516 kb on + strand, within EX31_RS12525at 177.516 kb on + strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.517 kb on - strand, within EX31_RS12525at 177.523 kb on + strand, within EX31_RS12525at 177.523 kb on + strand, within EX31_RS12525at 177.524 kb on - strand, within EX31_RS12525at 177.524 kb on - strand, within EX31_RS12525at 177.590 kb on + strandat 177.590 kb on + strandat 177.591 kb on - strandat 177.600 kb on + strandat 177.600 kb on + strandat 177.654 kb on + strandat 177.678 kb on + strandat 177.678 kb on + strandat 177.808 kb on + strand, within EX31_RS12530at 177.809 kb on - strand, within EX31_RS12530at 177.836 kb on + strand, within EX31_RS12530at 177.868 kb on + strand, within EX31_RS12530at 177.868 kb on + strand, within EX31_RS12530at 177.869 kb on - strand, within EX31_RS12530at 177.902 kb on - strand, within EX31_RS12530at 177.921 kb on + strand, within EX31_RS12530at 177.921 kb on + strand, within EX31_RS12530at 177.921 kb on + strand, within EX31_RS12530at 177.921 kb on + strand, within EX31_RS12530at 177.921 kb on + strand, within EX31_RS12530at 177.922 kb on - strand, within EX31_RS12530at 177.922 kb on - strand, within EX31_RS12530at 177.922 kb on - strand, within EX31_RS12530at 177.922 kb on - strand, within EX31_RS12530at 177.922 kb on - strand, within EX31_RS12530at 177.922 kb on - strand, within EX31_RS12530at 177.922 kb on - strand, within EX31_RS12530at 177.922 kb on - strand, within EX31_RS12530at 178.012 kb on + strand, within EX31_RS12530at 178.020 kb on + strand, within EX31_RS12530at 178.066 kb on + strand, within EX31_RS12530at 178.078 kb on + strand, within EX31_RS12530at 178.078 kb on + strand, within EX31_RS12530at 178.126 kb on + strand, within EX31_RS12530at 178.126 kb on + strand, within EX31_RS12530at 178.126 kb on + strand, within EX31_RS12530at 178.126 kb on + strand, within EX31_RS12530at 178.127 kb on - strand, within EX31_RS12530at 178.127 kb on - strand, within EX31_RS12530at 178.127 kb on - strand, within EX31_RS12530at 178.127 kb on - strand, within EX31_RS12530at 178.127 kb on - strand, within EX31_RS12530at 178.196 kb on + strandat 178.196 kb on + strandat 178.196 kb on + strandat 178.196 kb on + strandat 178.197 kb on - strandat 178.197 kb on - strandat 178.197 kb on - strandat 178.197 kb on - strandat 178.212 kb on - strandat 178.212 kb on - strandat 178.217 kb on + strandat 178.217 kb on + strandat 178.218 kb on - strandat 178.218 kb on - strandat 178.255 kb on - strandat 178.282 kb on + strandat 178.282 kb on + strandat 178.283 kb on - strandat 178.286 kb on + strandat 178.287 kb on - strandat 178.306 kb on + strandat 178.307 kb on - strandat 178.307 kb on - strandat 178.307 kb on - strandat 178.307 kb on - strandat 178.307 kb on - strandat 178.307 kb on - strandat 178.318 kb on + strand, within EX31_RS12535at 178.319 kb on - strand, within EX31_RS12535at 178.319 kb on - strand, within EX31_RS12535at 178.319 kb on - strand, within EX31_RS12535at 178.319 kb on - strand, within EX31_RS12535at 178.435 kb on + strand, within EX31_RS12535at 178.472 kb on - strand, within EX31_RS12535at 178.526 kb on + strand, within EX31_RS12535at 178.544 kb on - strand, within EX31_RS12535at 178.549 kb on - strand, within EX31_RS12535at 178.549 kb on - strand, within EX31_RS12535at 178.597 kb on + strand, within EX31_RS12535at 178.597 kb on + strand, within EX31_RS12535at 178.598 kb on - strand, within EX31_RS12535at 178.598 kb on - strand, within EX31_RS12535at 178.607 kb on + strand, within EX31_RS12535at 178.607 kb on + strand, within EX31_RS12535at 178.607 kb on + strand, within EX31_RS12535at 178.607 kb on + strand, within EX31_RS12535at 178.607 kb on + strand, within EX31_RS12535at 178.607 kb on + strand, within EX31_RS12535at 178.608 kb on - strand, within EX31_RS12535at 178.608 kb on - strand, within EX31_RS12535at 178.608 kb on - strand, within EX31_RS12535at 178.608 kb on - strand, within EX31_RS12535at 178.608 kb on - strand, within EX31_RS12535at 178.608 kb on - strand, within EX31_RS12535at 178.608 kb on - strand, within EX31_RS12535at 178.608 kb on - strand, within EX31_RS12535at 178.608 kb on - strand, within EX31_RS12535at 178.628 kb on - strand, within EX31_RS12535at 178.717 kb on + strand, within EX31_RS12535at 178.808 kb on - strandat 178.868 kb on + strandat 178.869 kb on - strandat 178.871 kb on + strandat 178.871 kb on + strandat 178.872 kb on - strandat 178.872 kb on - strandat 178.872 kb on - strandat 178.875 kb on + strandat 178.876 kb on - strandat 178.907 kb on + strandat 178.907 kb on + strandat 178.907 kb on + strandat 178.907 kb on + strandat 178.908 kb on - strandat 178.908 kb on - strandat 178.908 kb on - strandat 178.908 kb on - strandat 178.908 kb on - strandat 178.908 kb on - strandat 179.199 kb on + strand, within EX31_RS12540at 179.199 kb on + strand, within EX31_RS12540at 179.199 kb on + strand, within EX31_RS12540at 179.200 kb on - strand, within EX31_RS12540at 179.200 kb on - strand, within EX31_RS12540at 179.200 kb on - strand, within EX31_RS12540at 179.200 kb on - strand, within EX31_RS12540at 179.200 kb on - strand, within EX31_RS12540at 179.246 kb on + strandat 179.246 kb on + strandat 179.247 kb on - strandat 179.247 kb on - strandat 179.247 kb on - strandat 179.247 kb on - strandat 179.256 kb on + strandat 179.256 kb on + strandat 179.256 kb on + strandat 179.256 kb on + strandat 179.256 kb on + strandat 179.257 kb on - strandat 179.257 kb on - strandat 179.257 kb on - strandat 179.257 kb on - strandat 179.262 kb on + strandat 179.263 kb on - strandat 179.263 kb on - strandat 179.309 kb on + strandat 179.361 kb on + strandat 179.361 kb on + strandat 179.362 kb on - strandat 179.362 kb on - strandat 179.382 kb on + strandat 179.487 kb on - strandat 179.504 kb on + strandat 179.505 kb on - strandat 179.606 kb on + strand, within EX31_RS12545at 179.630 kb on + strand, within EX31_RS12545at 179.631 kb on - strand, within EX31_RS12545at 179.631 kb on - strand, within EX31_RS12545at 179.631 kb on - strand, within EX31_RS12545at 179.649 kb on - strand, within EX31_RS12545at 179.732 kb on + strand, within EX31_RS12545at 179.732 kb on + strand, within EX31_RS12545at 179.732 kb on + strand, within EX31_RS12545at 179.733 kb on - strand, within EX31_RS12545at 179.733 kb on - strand, within EX31_RS12545at 179.733 kb on - strand, within EX31_RS12545

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
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177,284 + EX31_RS12525 0.56 -0.3
177,284 + EX31_RS12525 0.56 +1.1
177,285 - EX31_RS12525 0.56 -0.3
177,354 + EX31_RS12525 0.66 +0.8
177,354 + EX31_RS12525 0.66 +1.2
177,354 + EX31_RS12525 0.66 -0.0
177,355 - EX31_RS12525 0.66 -0.8
177,355 - EX31_RS12525 0.66 -3.1
177,422 + EX31_RS12525 0.75 +0.0
177,516 + EX31_RS12525 0.88 +0.3
177,516 + EX31_RS12525 0.88 +0.5
177,516 + EX31_RS12525 0.88 +0.8
177,516 + EX31_RS12525 0.88 +0.7
177,516 + EX31_RS12525 0.88 +0.7
177,517 - EX31_RS12525 0.88 -0.2
177,517 - EX31_RS12525 0.88 -0.3
177,517 - EX31_RS12525 0.88 +1.1
177,517 - EX31_RS12525 0.88 -0.8
177,517 - EX31_RS12525 0.88 +0.4
177,517 - EX31_RS12525 0.88 +0.5
177,517 - EX31_RS12525 0.88 +0.5
177,517 - EX31_RS12525 0.88 -1.5
177,517 - EX31_RS12525 0.88 -0.7
177,517 - EX31_RS12525 0.88 +0.2
177,523 + EX31_RS12525 0.89 +0.8
177,523 + EX31_RS12525 0.89 +1.5
177,524 - EX31_RS12525 0.89 +0.6
177,524 - EX31_RS12525 0.89 +1.1
177,590 + +0.6
177,590 + -0.4
177,591 - +0.6
177,600 + +0.0
177,600 + -0.6
177,654 + -0.4
177,678 + -1.0
177,678 + +0.2
177,808 + EX31_RS12530 0.24 +0.7
177,809 - EX31_RS12530 0.24 +0.5
177,836 + EX31_RS12530 0.29 +0.2
177,868 + EX31_RS12530 0.35 -0.3
177,868 + EX31_RS12530 0.35 -0.0
177,869 - EX31_RS12530 0.35 -0.8
177,902 - EX31_RS12530 0.41 +0.4
177,921 + EX31_RS12530 0.44 +0.4
177,921 + EX31_RS12530 0.44 +0.4
177,921 + EX31_RS12530 0.44 -2.1
177,921 + EX31_RS12530 0.44 -0.3
177,921 + EX31_RS12530 0.44 +0.0
177,922 - EX31_RS12530 0.44 +0.5
177,922 - EX31_RS12530 0.44 +0.3
177,922 - EX31_RS12530 0.44 +0.1
177,922 - EX31_RS12530 0.44 -0.4
177,922 - EX31_RS12530 0.44 +0.2
177,922 - EX31_RS12530 0.44 -0.2
177,922 - EX31_RS12530 0.44 +0.9
177,922 - EX31_RS12530 0.44 +0.6
178,012 + EX31_RS12530 0.60 +0.2
178,020 + EX31_RS12530 0.61 +2.4
178,066 + EX31_RS12530 0.69 -0.4
178,078 + EX31_RS12530 0.71 +0.0
178,078 + EX31_RS12530 0.71 +0.3
178,126 + EX31_RS12530 0.80 +0.4
178,126 + EX31_RS12530 0.80 +0.4
178,126 + EX31_RS12530 0.80 +0.5
178,126 + EX31_RS12530 0.80 +0.5
178,127 - EX31_RS12530 0.80 -0.5
178,127 - EX31_RS12530 0.80 -0.5
178,127 - EX31_RS12530 0.80 +1.1
178,127 - EX31_RS12530 0.80 +0.5
178,127 - EX31_RS12530 0.80 +1.0
178,196 + -1.4
178,196 + -0.1
178,196 + +0.1
178,196 + -0.6
178,197 - +0.5
178,197 - +0.9
178,197 - +0.1
178,197 - -0.2
178,212 - +0.7
178,212 - -0.4
178,217 + -0.8
178,217 + -1.4
178,218 - +0.8
178,218 - +0.6
178,255 - +1.9
178,282 + +0.8
178,282 + +0.4
178,283 - +0.6
178,286 + +0.4
178,287 - +0.4
178,306 + +2.4
178,307 - +0.8
178,307 - -0.6
178,307 - +0.9
178,307 - +0.4
178,307 - +1.0
178,307 - -0.0
178,318 + EX31_RS12535 0.11 -0.2
178,319 - EX31_RS12535 0.11 +0.5
178,319 - EX31_RS12535 0.11 +2.0
178,319 - EX31_RS12535 0.11 +0.9
178,319 - EX31_RS12535 0.11 -0.1
178,435 + EX31_RS12535 0.31 -1.1
178,472 - EX31_RS12535 0.37 +0.8
178,526 + EX31_RS12535 0.46 +1.2
178,544 - EX31_RS12535 0.49 +1.0
178,549 - EX31_RS12535 0.50 +0.1
178,549 - EX31_RS12535 0.50 +2.1
178,597 + EX31_RS12535 0.58 +1.1
178,597 + EX31_RS12535 0.58 +3.4
178,598 - EX31_RS12535 0.58 +0.1
178,598 - EX31_RS12535 0.58 +0.2
178,607 + EX31_RS12535 0.60 +1.2
178,607 + EX31_RS12535 0.60 +1.2
178,607 + EX31_RS12535 0.60 +1.0
178,607 + EX31_RS12535 0.60 +1.2
178,607 + EX31_RS12535 0.60 +0.2
178,607 + EX31_RS12535 0.60 +2.4
178,608 - EX31_RS12535 0.60 +0.8
178,608 - EX31_RS12535 0.60 +0.5
178,608 - EX31_RS12535 0.60 +0.2
178,608 - EX31_RS12535 0.60 -0.1
178,608 - EX31_RS12535 0.60 -0.2
178,608 - EX31_RS12535 0.60 +1.1
178,608 - EX31_RS12535 0.60 +2.6
178,608 - EX31_RS12535 0.60 +0.7
178,608 - EX31_RS12535 0.60 +2.0
178,628 - EX31_RS12535 0.63 +0.9
178,717 + EX31_RS12535 0.79 +1.3
178,808 - +1.2
178,868 + +1.4
178,869 - -1.3
178,871 + +2.0
178,871 + +0.0
178,872 - -0.7
178,872 - +1.2
178,872 - +0.5
178,875 + +0.7
178,876 - +0.0
178,907 + -1.4
178,907 + +0.4
178,907 + +0.2
178,907 + +0.2
178,908 - -0.3
178,908 - -0.6
178,908 - -0.2
178,908 - +0.4
178,908 - -0.3
178,908 - -0.1
179,199 + EX31_RS12540 0.88 -0.5
179,199 + EX31_RS12540 0.88 -0.3
179,199 + EX31_RS12540 0.88 +0.4
179,200 - EX31_RS12540 0.88 -0.4
179,200 - EX31_RS12540 0.88 -0.2
179,200 - EX31_RS12540 0.88 -1.1
179,200 - EX31_RS12540 0.88 -1.2
179,200 - EX31_RS12540 0.88 -0.2
179,246 + +0.6
179,246 + -0.8
179,247 - +0.8
179,247 - -1.1
179,247 - -0.1
179,247 - +0.1
179,256 + +1.5
179,256 + +0.3
179,256 + -1.1
179,256 + +0.7
179,256 + +1.2
179,257 - -0.3
179,257 - -0.0
179,257 - +0.1
179,257 - -0.6
179,262 + +1.6
179,263 - -0.2
179,263 - +0.1
179,309 + +1.9
179,361 + -0.6
179,361 + +0.2
179,362 - -0.2
179,362 - +0.3
179,382 + +0.3
179,487 - +0.2
179,504 + +1.4
179,505 - +1.1
179,606 + EX31_RS12545 0.15 -1.7
179,630 + EX31_RS12545 0.16 +0.6
179,631 - EX31_RS12545 0.16 -0.8
179,631 - EX31_RS12545 0.16 -0.1
179,631 - EX31_RS12545 0.16 +1.0
179,649 - EX31_RS12545 0.17 -0.9
179,732 + EX31_RS12545 0.21 -0.5
179,732 + EX31_RS12545 0.21 -0.5
179,732 + EX31_RS12545 0.21 -0.9
179,733 - EX31_RS12545 0.21 -0.3
179,733 - EX31_RS12545 0.21 -0.1
179,733 - EX31_RS12545 0.21 +0.5

Or see this region's nucleotide sequence