Experiment: L-Serine (N); ShewMM media; no shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10075 and EX31_RS10080 are separated by 112 nucleotides EX31_RS10080 and EX31_RS10085 are separated by 623 nucleotides
EX31_RS10075: EX31_RS10075 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase, at 223,185 to 225,854
_RS10075
EX31_RS10080: EX31_RS10080 - thymidine kinase, at 225,967 to 226,575
_RS10080
EX31_RS10085: EX31_RS10085 - DNA-binding transcriptional regulator H-NS, at 227,199 to 227,606
_RS10085
Position (kb) 225
226
227 Strain fitness (log2 ratio) -2
-1
0
1
2 at 225.018 kb on - strand, within EX31_RS10075 at 225.058 kb on - strand, within EX31_RS10075 at 225.168 kb on + strand, within EX31_RS10075 at 225.169 kb on - strand, within EX31_RS10075 at 225.169 kb on - strand, within EX31_RS10075 at 225.253 kb on - strand, within EX31_RS10075 at 225.266 kb on + strand, within EX31_RS10075 at 225.437 kb on + strand, within EX31_RS10075 at 225.437 kb on + strand, within EX31_RS10075 at 225.437 kb on + strand, within EX31_RS10075 at 225.438 kb on - strand, within EX31_RS10075 at 225.438 kb on - strand, within EX31_RS10075 at 225.481 kb on - strand, within EX31_RS10075 at 225.529 kb on + strand, within EX31_RS10075 at 225.530 kb on - strand, within EX31_RS10075 at 225.555 kb on - strand, within EX31_RS10075 at 225.727 kb on - strand at 225.765 kb on - strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.768 kb on + strand at 225.769 kb on - strand at 225.769 kb on - strand at 225.769 kb on - strand at 225.771 kb on + strand at 225.783 kb on + strand at 225.784 kb on - strand at 225.796 kb on + strand at 225.797 kb on - strand at 225.797 kb on - strand at 225.865 kb on + strand at 225.866 kb on - strand at 225.872 kb on - strand at 225.924 kb on - strand at 225.950 kb on + strand at 225.951 kb on - strand at 225.969 kb on - strand at 225.978 kb on + strand at 225.978 kb on + strand at 225.979 kb on - strand at 225.979 kb on - strand at 225.979 kb on - strand at 226.020 kb on - strand at 226.020 kb on - strand at 226.027 kb on - strand at 226.085 kb on - strand, within EX31_RS10080 at 226.085 kb on - strand, within EX31_RS10080 at 226.085 kb on - strand, within EX31_RS10080 at 226.188 kb on - strand, within EX31_RS10080 at 226.188 kb on - strand, within EX31_RS10080 at 226.235 kb on + strand, within EX31_RS10080 at 226.243 kb on + strand, within EX31_RS10080 at 226.244 kb on - strand, within EX31_RS10080 at 226.391 kb on + strand, within EX31_RS10080 at 226.391 kb on + strand, within EX31_RS10080 at 226.391 kb on + strand, within EX31_RS10080 at 226.392 kb on - strand, within EX31_RS10080 at 226.392 kb on - strand, within EX31_RS10080 at 226.392 kb on - strand, within EX31_RS10080 at 226.500 kb on - strand, within EX31_RS10080 at 226.503 kb on + strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.504 kb on - strand, within EX31_RS10080 at 226.506 kb on - strand, within EX31_RS10080 at 226.556 kb on + strand at 226.557 kb on - strand at 226.557 kb on - strand at 226.563 kb on - strand at 226.563 kb on - strand at 226.592 kb on - strand at 226.592 kb on - strand at 226.623 kb on + strand at 226.623 kb on + strand at 226.623 kb on + strand at 226.624 kb on - strand at 226.624 kb on - strand at 226.624 kb on - strand at 226.624 kb on - strand at 226.624 kb on - strand at 226.628 kb on + strand at 226.628 kb on + strand at 226.629 kb on - strand at 226.647 kb on + strand at 226.647 kb on + strand at 226.648 kb on - strand at 226.648 kb on - strand at 226.650 kb on - strand at 226.703 kb on - strand at 226.751 kb on + strand at 226.752 kb on - strand at 226.775 kb on - strand at 226.796 kb on + strand at 226.796 kb on + strand at 226.798 kb on + strand at 226.798 kb on + strand at 226.799 kb on - strand at 226.816 kb on + strand at 226.916 kb on + strand at 226.916 kb on + strand at 226.916 kb on + strand at 226.917 kb on - strand at 226.917 kb on - strand at 226.917 kb on - strand at 226.917 kb on - strand at 226.917 kb on - strand at 226.921 kb on + strand at 226.922 kb on - strand at 226.922 kb on - strand at 227.024 kb on - strand at 227.038 kb on - strand at 227.062 kb on - strand at 227.062 kb on - strand at 227.551 kb on + strand, within EX31_RS10085
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking remove 225,018 - EX31_RS10075 0.69 -0.8 225,058 - EX31_RS10075 0.70 -2.5 225,168 + EX31_RS10075 0.74 -0.7 225,169 - EX31_RS10075 0.74 +1.9 225,169 - EX31_RS10075 0.74 -0.3 225,253 - EX31_RS10075 0.77 -2.0 225,266 + EX31_RS10075 0.78 +0.8 225,437 + EX31_RS10075 0.84 -0.2 225,437 + EX31_RS10075 0.84 -0.4 225,437 + EX31_RS10075 0.84 -1.0 225,438 - EX31_RS10075 0.84 +0.1 225,438 - EX31_RS10075 0.84 +0.2 225,481 - EX31_RS10075 0.86 +0.1 225,529 + EX31_RS10075 0.88 -1.2 225,530 - EX31_RS10075 0.88 +0.8 225,555 - EX31_RS10075 0.89 -1.0 225,727 - -0.8 225,765 - -0.8 225,768 + -1.3 225,768 + +0.4 225,768 + +1.6 225,768 + -2.0 225,768 + +0.1 225,768 + -0.8 225,768 + -0.5 225,768 + -0.6 225,768 + -0.0 225,769 - -1.5 225,769 - -0.5 225,769 - +0.3 225,771 + -0.0 225,783 + +0.6 225,784 - +0.7 225,796 + -0.2 225,797 - +1.6 225,797 - -1.7 225,865 + -1.0 225,866 - -0.4 225,872 - +1.6 225,924 - -0.7 225,950 + +0.6 225,951 - +0.2 225,969 - +0.2 225,978 + +2.1 225,978 + -1.8 225,979 - -0.6 225,979 - +0.1 225,979 - -0.6 226,020 - +0.6 226,020 - -1.2 226,027 - +0.0 226,085 - EX31_RS10080 0.19 +0.4 226,085 - EX31_RS10080 0.19 +0.4 226,085 - EX31_RS10080 0.19 -0.2 226,188 - EX31_RS10080 0.36 +0.6 226,188 - EX31_RS10080 0.36 -0.9 226,235 + EX31_RS10080 0.44 -0.8 226,243 + EX31_RS10080 0.45 +1.6 226,244 - EX31_RS10080 0.45 -2.1 226,391 + EX31_RS10080 0.70 +0.2 226,391 + EX31_RS10080 0.70 -0.2 226,391 + EX31_RS10080 0.70 +0.6 226,392 - EX31_RS10080 0.70 +0.4 226,392 - EX31_RS10080 0.70 -0.4 226,392 - EX31_RS10080 0.70 +0.2 226,500 - EX31_RS10080 0.88 -0.8 226,503 + EX31_RS10080 0.88 +0.1 226,504 - EX31_RS10080 0.88 +0.2 226,504 - EX31_RS10080 0.88 +1.0 226,504 - EX31_RS10080 0.88 -0.7 226,504 - EX31_RS10080 0.88 -0.6 226,504 - EX31_RS10080 0.88 -1.0 226,504 - EX31_RS10080 0.88 +0.4 226,506 - EX31_RS10080 0.89 -1.7 226,556 + -1.0 226,557 - +0.1 226,557 - +0.2 226,563 - +1.1 226,563 - -0.0 226,592 - +0.4 226,592 - +1.1 226,623 + -0.4 226,623 + -1.9 226,623 + -1.9 226,624 - -1.1 226,624 - +1.6 226,624 - -0.8 226,624 - -1.8 226,624 - -0.8 226,628 + -0.4 226,628 + -1.8 226,629 - -1.4 226,647 + +0.3 226,647 + -0.0 226,648 - -0.8 226,648 - +0.4 226,650 - +1.1 226,703 - -0.6 226,751 + -0.4 226,752 - +0.6 226,775 - -0.4 226,796 + -0.8 226,796 + -1.0 226,798 + +0.6 226,798 + +1.4 226,799 - -0.1 226,816 + +0.7 226,916 + -0.4 226,916 + +0.6 226,916 + -1.9 226,917 - +0.2 226,917 - -0.7 226,917 - -0.0 226,917 - +0.6 226,917 - -1.8 226,921 + -1.0 226,922 - -1.8 226,922 - -0.2 227,024 - -0.7 227,038 - -2.2 227,062 - -0.4 227,062 - +0.4 227,551 + EX31_RS10085 0.86 -1.8
Or see this region's nucleotide sequence