Strain Fitness in Rahnella sp. WP5 around EX31_RS01635

Experiment: L-Serine (N); ShewMM media; no shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01630 and EX31_RS01635 overlap by 4 nucleotidesEX31_RS01635 and EX31_RS01640 overlap by 4 nucleotides EX31_RS01630: EX31_RS01630 - phage portal protein, at 361,800 to 363,278 _RS01630 EX31_RS01635: EX31_RS01635 - hypothetical protein, at 363,275 to 363,493 _RS01635 EX31_RS01640: EX31_RS01640 - phage terminase large subunit family protein, at 363,490 to 365,592 _RS01640 Position (kb) 363 364Strain fitness (log2 ratio) -2 -1 0 1 2at 362.330 kb on + strand, within EX31_RS01630at 362.331 kb on - strand, within EX31_RS01630at 362.415 kb on - strand, within EX31_RS01630at 362.458 kb on + strand, within EX31_RS01630at 362.458 kb on + strand, within EX31_RS01630at 362.458 kb on + strand, within EX31_RS01630at 362.458 kb on + strand, within EX31_RS01630at 362.459 kb on - strand, within EX31_RS01630at 362.459 kb on - strand, within EX31_RS01630at 362.459 kb on - strand, within EX31_RS01630at 362.459 kb on - strand, within EX31_RS01630at 362.459 kb on - strand, within EX31_RS01630at 362.628 kb on - strand, within EX31_RS01630at 362.675 kb on - strand, within EX31_RS01630at 362.675 kb on - strand, within EX31_RS01630at 362.675 kb on - strand, within EX31_RS01630at 362.675 kb on - strand, within EX31_RS01630at 362.675 kb on - strand, within EX31_RS01630at 362.675 kb on - strand, within EX31_RS01630at 362.704 kb on + strand, within EX31_RS01630at 362.704 kb on + strand, within EX31_RS01630at 362.704 kb on + strand, within EX31_RS01630at 362.704 kb on + strand, within EX31_RS01630at 362.705 kb on - strand, within EX31_RS01630at 362.705 kb on - strand, within EX31_RS01630at 362.756 kb on - strand, within EX31_RS01630at 362.957 kb on + strand, within EX31_RS01630at 363.194 kb on - strandat 363.454 kb on + strand, within EX31_RS01635at 363.454 kb on + strand, within EX31_RS01635at 363.454 kb on + strand, within EX31_RS01635at 363.454 kb on + strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.455 kb on - strand, within EX31_RS01635at 363.456 kb on + strand, within EX31_RS01635at 363.456 kb on + strand, within EX31_RS01635at 363.456 kb on + strand, within EX31_RS01635at 363.456 kb on + strand, within EX31_RS01635at 363.457 kb on - strand, within EX31_RS01635at 363.457 kb on - strand, within EX31_RS01635at 363.457 kb on - strand, within EX31_RS01635at 363.569 kb on - strandat 363.569 kb on - strandat 363.576 kb on + strandat 363.577 kb on - strandat 363.677 kb on + strandat 363.707 kb on + strand, within EX31_RS01640at 363.707 kb on + strand, within EX31_RS01640at 363.709 kb on + strand, within EX31_RS01640at 363.709 kb on + strand, within EX31_RS01640at 363.782 kb on + strand, within EX31_RS01640at 363.782 kb on + strand, within EX31_RS01640at 363.783 kb on - strand, within EX31_RS01640at 363.783 kb on - strand, within EX31_RS01640at 363.833 kb on + strand, within EX31_RS01640at 363.834 kb on - strand, within EX31_RS01640at 363.834 kb on - strand, within EX31_RS01640at 363.834 kb on - strand, within EX31_RS01640at 363.834 kb on - strand, within EX31_RS01640at 363.834 kb on - strand, within EX31_RS01640at 363.888 kb on + strand, within EX31_RS01640at 364.016 kb on + strand, within EX31_RS01640at 364.017 kb on - strand, within EX31_RS01640at 364.064 kb on + strand, within EX31_RS01640at 364.064 kb on + strand, within EX31_RS01640at 364.065 kb on - strand, within EX31_RS01640at 364.393 kb on - strand, within EX31_RS01640at 364.422 kb on + strand, within EX31_RS01640at 364.464 kb on + strand, within EX31_RS01640at 364.465 kb on - strand, within EX31_RS01640at 364.465 kb on - strand, within EX31_RS01640at 364.467 kb on - strand, within EX31_RS01640at 364.467 kb on - strand, within EX31_RS01640at 364.467 kb on - strand, within EX31_RS01640at 364.467 kb on - strand, within EX31_RS01640at 364.467 kb on - strand, within EX31_RS01640at 364.467 kb on - strand, within EX31_RS01640

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
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362,330 + EX31_RS01630 0.36 +0.8
362,331 - EX31_RS01630 0.36 -2.3
362,415 - EX31_RS01630 0.42 -0.9
362,458 + EX31_RS01630 0.44 +1.4
362,458 + EX31_RS01630 0.44 -0.0
362,458 + EX31_RS01630 0.44 -0.0
362,458 + EX31_RS01630 0.44 +0.1
362,459 - EX31_RS01630 0.45 +0.8
362,459 - EX31_RS01630 0.45 -0.4
362,459 - EX31_RS01630 0.45 -1.7
362,459 - EX31_RS01630 0.45 +1.1
362,459 - EX31_RS01630 0.45 +1.1
362,628 - EX31_RS01630 0.56 -0.7
362,675 - EX31_RS01630 0.59 -0.3
362,675 - EX31_RS01630 0.59 +0.7
362,675 - EX31_RS01630 0.59 +0.0
362,675 - EX31_RS01630 0.59 -0.5
362,675 - EX31_RS01630 0.59 -0.4
362,675 - EX31_RS01630 0.59 +0.2
362,704 + EX31_RS01630 0.61 +1.1
362,704 + EX31_RS01630 0.61 +0.3
362,704 + EX31_RS01630 0.61 -2.0
362,704 + EX31_RS01630 0.61 +0.5
362,705 - EX31_RS01630 0.61 +0.6
362,705 - EX31_RS01630 0.61 +0.1
362,756 - EX31_RS01630 0.65 -0.1
362,957 + EX31_RS01630 0.78 -2.5
363,194 - +0.9
363,454 + EX31_RS01635 0.82 +0.1
363,454 + EX31_RS01635 0.82 +1.5
363,454 + EX31_RS01635 0.82 -1.0
363,454 + EX31_RS01635 0.82 -0.7
363,455 - EX31_RS01635 0.82 +0.4
363,455 - EX31_RS01635 0.82 +1.0
363,455 - EX31_RS01635 0.82 +0.9
363,455 - EX31_RS01635 0.82 +0.7
363,455 - EX31_RS01635 0.82 +1.6
363,455 - EX31_RS01635 0.82 +1.2
363,455 - EX31_RS01635 0.82 +0.7
363,455 - EX31_RS01635 0.82 -0.1
363,455 - EX31_RS01635 0.82 +1.2
363,455 - EX31_RS01635 0.82 -0.7
363,456 + EX31_RS01635 0.83 -0.1
363,456 + EX31_RS01635 0.83 +1.5
363,456 + EX31_RS01635 0.83 +0.5
363,456 + EX31_RS01635 0.83 +0.7
363,457 - EX31_RS01635 0.83 +1.1
363,457 - EX31_RS01635 0.83 +2.5
363,457 - EX31_RS01635 0.83 +0.5
363,569 - -0.2
363,569 - +0.2
363,576 + +0.0
363,577 - +1.3
363,677 + -0.9
363,707 + EX31_RS01640 0.10 +1.3
363,707 + EX31_RS01640 0.10 +0.8
363,709 + EX31_RS01640 0.10 +1.4
363,709 + EX31_RS01640 0.10 -0.4
363,782 + EX31_RS01640 0.14 +2.0
363,782 + EX31_RS01640 0.14 +0.6
363,783 - EX31_RS01640 0.14 +0.4
363,783 - EX31_RS01640 0.14 +0.6
363,833 + EX31_RS01640 0.16 +0.6
363,834 - EX31_RS01640 0.16 +1.9
363,834 - EX31_RS01640 0.16 -0.7
363,834 - EX31_RS01640 0.16 -1.0
363,834 - EX31_RS01640 0.16 +1.6
363,834 - EX31_RS01640 0.16 -0.1
363,888 + EX31_RS01640 0.19 +0.9
364,016 + EX31_RS01640 0.25 -0.3
364,017 - EX31_RS01640 0.25 +2.0
364,064 + EX31_RS01640 0.27 +0.3
364,064 + EX31_RS01640 0.27 +0.2
364,065 - EX31_RS01640 0.27 +2.0
364,393 - EX31_RS01640 0.43 -0.1
364,422 + EX31_RS01640 0.44 +0.0
364,464 + EX31_RS01640 0.46 +1.6
364,465 - EX31_RS01640 0.46 +1.5
364,465 - EX31_RS01640 0.46 -0.9
364,467 - EX31_RS01640 0.46 +0.1
364,467 - EX31_RS01640 0.46 -1.1
364,467 - EX31_RS01640 0.46 +0.1
364,467 - EX31_RS01640 0.46 +0.5
364,467 - EX31_RS01640 0.46 +0.5
364,467 - EX31_RS01640 0.46 -1.6

Or see this region's nucleotide sequence