Strain Fitness in Rahnella sp. WP5 around EX31_RS01470

Experiment: L-Serine (N); ShewMM media; no shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS01465 and EX31_RS01470 are separated by 3 nucleotidesEX31_RS01470 and EX31_RS01475 are separated by 67 nucleotidesEX31_RS01475 and EX31_RS01480 are separated by 68 nucleotides EX31_RS01465: EX31_RS01465 - oligogalacturonate lyase, at 330,492 to 331,673 _RS01465 EX31_RS01470: EX31_RS01470 - cupin domain-containing protein, at 331,677 to 331,997 _RS01470 EX31_RS01475: EX31_RS01475 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 332,065 to 332,703 _RS01475 EX31_RS01480: EX31_RS01480 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 332,772 to 333,533 _RS01480 Position (kb) 331 332Strain fitness (log2 ratio) -2 -1 0 1 2at 330.679 kb on - strand, within EX31_RS01465at 330.679 kb on - strand, within EX31_RS01465at 330.679 kb on - strand, within EX31_RS01465at 330.771 kb on + strand, within EX31_RS01465at 330.771 kb on + strand, within EX31_RS01465at 330.778 kb on - strand, within EX31_RS01465at 330.780 kb on + strand, within EX31_RS01465at 330.781 kb on - strand, within EX31_RS01465at 330.798 kb on - strand, within EX31_RS01465at 330.811 kb on + strand, within EX31_RS01465at 330.844 kb on - strand, within EX31_RS01465at 330.844 kb on - strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.251 kb on + strand, within EX31_RS01465at 331.252 kb on - strand, within EX31_RS01465at 331.334 kb on + strand, within EX31_RS01465at 331.335 kb on - strand, within EX31_RS01465at 331.433 kb on + strand, within EX31_RS01465at 331.459 kb on - strand, within EX31_RS01465at 331.506 kb on - strand, within EX31_RS01465at 331.506 kb on - strand, within EX31_RS01465at 331.603 kb on - strandat 331.623 kb on + strandat 331.624 kb on - strandat 331.682 kb on + strandat 331.682 kb on + strandat 331.683 kb on - strandat 331.683 kb on - strandat 331.698 kb on - strandat 331.777 kb on - strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.833 kb on + strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.834 kb on - strand, within EX31_RS01470at 331.854 kb on - strand, within EX31_RS01470at 331.886 kb on - strand, within EX31_RS01470at 331.886 kb on - strand, within EX31_RS01470at 331.905 kb on + strand, within EX31_RS01470at 331.905 kb on + strand, within EX31_RS01470at 331.906 kb on - strand, within EX31_RS01470at 331.917 kb on + strand, within EX31_RS01470at 331.917 kb on + strand, within EX31_RS01470at 331.917 kb on + strand, within EX31_RS01470at 331.918 kb on - strand, within EX31_RS01470at 331.918 kb on - strand, within EX31_RS01470at 331.996 kb on - strandat 332.011 kb on + strandat 332.011 kb on + strandat 332.199 kb on - strand, within EX31_RS01475at 332.210 kb on - strand, within EX31_RS01475at 332.210 kb on - strand, within EX31_RS01475at 332.427 kb on + strand, within EX31_RS01475at 332.427 kb on + strand, within EX31_RS01475at 332.427 kb on + strand, within EX31_RS01475at 332.428 kb on - strand, within EX31_RS01475at 332.457 kb on + strand, within EX31_RS01475at 332.458 kb on - strand, within EX31_RS01475at 332.521 kb on - strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.561 kb on + strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.562 kb on - strand, within EX31_RS01475at 332.751 kb on - strandat 332.761 kb on - strandat 332.810 kb on - strandat 332.820 kb on - strandat 332.820 kb on - strandat 332.820 kb on - strandat 332.820 kb on - strandat 332.820 kb on - strandat 332.821 kb on + strandat 332.822 kb on - strandat 332.822 kb on - strandat 332.822 kb on - strandat 332.898 kb on - strand, within EX31_RS01480at 332.963 kb on + strand, within EX31_RS01480at 332.964 kb on - strand, within EX31_RS01480at 332.965 kb on + strand, within EX31_RS01480at 332.966 kb on - strand, within EX31_RS01480at 332.966 kb on - strand, within EX31_RS01480at 332.966 kb on - strand, within EX31_RS01480at 332.966 kb on - strand, within EX31_RS01480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); ShewMM media; no shaking
remove
330,679 - EX31_RS01465 0.16 -0.9
330,679 - EX31_RS01465 0.16 -0.6
330,679 - EX31_RS01465 0.16 +1.0
330,771 + EX31_RS01465 0.24 +2.0
330,771 + EX31_RS01465 0.24 +1.0
330,778 - EX31_RS01465 0.24 +0.3
330,780 + EX31_RS01465 0.24 +0.1
330,781 - EX31_RS01465 0.24 +0.0
330,798 - EX31_RS01465 0.26 -0.4
330,811 + EX31_RS01465 0.27 +0.1
330,844 - EX31_RS01465 0.30 -0.2
330,844 - EX31_RS01465 0.30 +1.2
331,251 + EX31_RS01465 0.64 +1.5
331,251 + EX31_RS01465 0.64 -1.1
331,251 + EX31_RS01465 0.64 -0.2
331,251 + EX31_RS01465 0.64 +0.4
331,251 + EX31_RS01465 0.64 +1.4
331,251 + EX31_RS01465 0.64 -0.6
331,251 + EX31_RS01465 0.64 -0.3
331,251 + EX31_RS01465 0.64 -0.2
331,251 + EX31_RS01465 0.64 +0.8
331,251 + EX31_RS01465 0.64 -0.9
331,251 + EX31_RS01465 0.64 -0.9
331,251 + EX31_RS01465 0.64 -0.9
331,251 + EX31_RS01465 0.64 +0.0
331,251 + EX31_RS01465 0.64 -0.6
331,252 - EX31_RS01465 0.64 +1.2
331,334 + EX31_RS01465 0.71 +0.7
331,335 - EX31_RS01465 0.71 -0.6
331,433 + EX31_RS01465 0.80 +1.3
331,459 - EX31_RS01465 0.82 +0.7
331,506 - EX31_RS01465 0.86 +0.7
331,506 - EX31_RS01465 0.86 +1.4
331,603 - -0.2
331,623 + +2.0
331,624 - -0.3
331,682 + -1.1
331,682 + +1.0
331,683 - +0.0
331,683 - +0.1
331,698 - +1.2
331,777 - EX31_RS01470 0.31 +1.4
331,833 + EX31_RS01470 0.49 +0.2
331,833 + EX31_RS01470 0.49 +0.6
331,833 + EX31_RS01470 0.49 -0.2
331,833 + EX31_RS01470 0.49 +2.3
331,833 + EX31_RS01470 0.49 +1.4
331,833 + EX31_RS01470 0.49 +0.4
331,833 + EX31_RS01470 0.49 +1.4
331,833 + EX31_RS01470 0.49 +2.0
331,833 + EX31_RS01470 0.49 +0.2
331,833 + EX31_RS01470 0.49 +0.4
331,833 + EX31_RS01470 0.49 +1.0
331,833 + EX31_RS01470 0.49 +1.1
331,833 + EX31_RS01470 0.49 +0.6
331,833 + EX31_RS01470 0.49 +0.4
331,833 + EX31_RS01470 0.49 +0.1
331,833 + EX31_RS01470 0.49 +0.6
331,833 + EX31_RS01470 0.49 +0.5
331,834 - EX31_RS01470 0.49 +0.6
331,834 - EX31_RS01470 0.49 +2.2
331,834 - EX31_RS01470 0.49 -0.1
331,834 - EX31_RS01470 0.49 -0.6
331,834 - EX31_RS01470 0.49 -1.0
331,854 - EX31_RS01470 0.55 +0.0
331,886 - EX31_RS01470 0.65 +1.0
331,886 - EX31_RS01470 0.65 -0.3
331,905 + EX31_RS01470 0.71 -0.3
331,905 + EX31_RS01470 0.71 +1.2
331,906 - EX31_RS01470 0.71 +2.3
331,917 + EX31_RS01470 0.75 -1.6
331,917 + EX31_RS01470 0.75 +0.4
331,917 + EX31_RS01470 0.75 +1.7
331,918 - EX31_RS01470 0.75 +0.4
331,918 - EX31_RS01470 0.75 -0.6
331,996 - +0.0
332,011 + +1.4
332,011 + +0.0
332,199 - EX31_RS01475 0.21 +0.7
332,210 - EX31_RS01475 0.23 +1.0
332,210 - EX31_RS01475 0.23 -1.0
332,427 + EX31_RS01475 0.57 -0.2
332,427 + EX31_RS01475 0.57 -0.3
332,427 + EX31_RS01475 0.57 +0.3
332,428 - EX31_RS01475 0.57 +0.5
332,457 + EX31_RS01475 0.61 +0.8
332,458 - EX31_RS01475 0.62 +0.1
332,521 - EX31_RS01475 0.71 -0.6
332,561 + EX31_RS01475 0.78 -0.6
332,561 + EX31_RS01475 0.78 +0.2
332,561 + EX31_RS01475 0.78 +0.3
332,561 + EX31_RS01475 0.78 -0.7
332,561 + EX31_RS01475 0.78 -2.1
332,561 + EX31_RS01475 0.78 +0.4
332,562 - EX31_RS01475 0.78 +1.3
332,562 - EX31_RS01475 0.78 -0.8
332,562 - EX31_RS01475 0.78 +2.7
332,562 - EX31_RS01475 0.78 +0.9
332,562 - EX31_RS01475 0.78 -0.5
332,562 - EX31_RS01475 0.78 +0.5
332,751 - -1.7
332,761 - -0.8
332,810 - -1.8
332,820 - -1.5
332,820 - +1.6
332,820 - -0.2
332,820 - +1.0
332,820 - +0.4
332,821 + +1.8
332,822 - +0.6
332,822 - +0.3
332,822 - +0.4
332,898 - EX31_RS01480 0.17 -0.7
332,963 + EX31_RS01480 0.25 +0.6
332,964 - EX31_RS01480 0.25 +0.2
332,965 + EX31_RS01480 0.25 +2.3
332,966 - EX31_RS01480 0.25 +0.8
332,966 - EX31_RS01480 0.25 -0.4
332,966 - EX31_RS01480 0.25 -0.6
332,966 - EX31_RS01480 0.25 -0.4

Or see this region's nucleotide sequence