Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03849

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03848 and CCNA_03849 are separated by 144 nucleotidesCCNA_03849 and CCNA_03850 are separated by 7 nucleotidesCCNA_03850 and CCNA_03851 are separated by 12 nucleotides CCNA_03848: CCNA_03848 - ATP-grasp domain protein, at 4,013,963 to 4,014,820 _03848 CCNA_03849: CCNA_03849 - fructokinase, at 4,014,965 to 4,015,954 _03849 CCNA_03850: CCNA_03850 - imidazoleglycerol-phosphate dehydratase, at 4,015,962 to 4,016,552 _03850 CCNA_03851: CCNA_03851 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 4,016,565 to 4,017,206 _03851 Position (kb) 4014 4015 4016Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4014.003 kb on + strandat 4014.007 kb on + strandat 4014.013 kb on - strandat 4014.014 kb on + strandat 4014.014 kb on + strandat 4014.015 kb on - strandat 4014.069 kb on - strand, within CCNA_03848at 4014.069 kb on - strand, within CCNA_03848at 4014.086 kb on + strand, within CCNA_03848at 4014.089 kb on - strand, within CCNA_03848at 4014.101 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.107 kb on + strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.115 kb on - strand, within CCNA_03848at 4014.133 kb on + strand, within CCNA_03848at 4014.155 kb on + strand, within CCNA_03848at 4014.162 kb on - strand, within CCNA_03848at 4014.231 kb on + strand, within CCNA_03848at 4014.312 kb on + strand, within CCNA_03848at 4014.312 kb on + strand, within CCNA_03848at 4014.315 kb on - strand, within CCNA_03848at 4014.317 kb on + strand, within CCNA_03848at 4014.323 kb on + strand, within CCNA_03848at 4014.323 kb on + strand, within CCNA_03848at 4014.398 kb on - strand, within CCNA_03848at 4014.410 kb on - strand, within CCNA_03848at 4014.416 kb on + strand, within CCNA_03848at 4014.441 kb on - strand, within CCNA_03848at 4014.485 kb on - strand, within CCNA_03848at 4014.523 kb on + strand, within CCNA_03848at 4014.523 kb on + strand, within CCNA_03848at 4014.531 kb on - strand, within CCNA_03848at 4014.545 kb on + strand, within CCNA_03848at 4014.592 kb on - strand, within CCNA_03848at 4014.594 kb on + strand, within CCNA_03848at 4014.602 kb on - strand, within CCNA_03848at 4014.636 kb on + strand, within CCNA_03848at 4014.641 kb on + strand, within CCNA_03848at 4014.643 kb on - strand, within CCNA_03848at 4014.644 kb on - strand, within CCNA_03848at 4014.644 kb on - strand, within CCNA_03848at 4014.670 kb on + strand, within CCNA_03848at 4014.673 kb on - strand, within CCNA_03848at 4014.684 kb on + strand, within CCNA_03848at 4014.684 kb on + strand, within CCNA_03848at 4014.698 kb on - strand, within CCNA_03848at 4014.703 kb on - strand, within CCNA_03848at 4014.705 kb on - strand, within CCNA_03848at 4014.715 kb on + strand, within CCNA_03848at 4014.744 kb on + strandat 4014.759 kb on + strandat 4014.759 kb on + strandat 4014.792 kb on + strandat 4014.811 kb on - strandat 4014.836 kb on + strandat 4014.836 kb on + strandat 4014.836 kb on + strandat 4014.836 kb on + strandat 4014.841 kb on + strandat 4014.844 kb on - strandat 4014.844 kb on - strandat 4014.844 kb on - strandat 4014.844 kb on - strandat 4014.844 kb on - strandat 4014.844 kb on - strandat 4014.844 kb on - strandat 4014.844 kb on - strandat 4014.854 kb on - strandat 4014.859 kb on + strandat 4014.863 kb on - strandat 4014.867 kb on + strandat 4014.880 kb on - strandat 4014.930 kb on - strandat 4014.935 kb on + strandat 4015.033 kb on + strandat 4015.044 kb on + strandat 4015.047 kb on - strandat 4015.060 kb on - strandat 4015.065 kb on - strand, within CCNA_03849at 4015.065 kb on - strand, within CCNA_03849at 4015.100 kb on + strand, within CCNA_03849at 4015.103 kb on - strand, within CCNA_03849at 4015.141 kb on - strand, within CCNA_03849at 4015.193 kb on + strand, within CCNA_03849at 4015.312 kb on - strand, within CCNA_03849at 4015.364 kb on - strand, within CCNA_03849at 4015.368 kb on + strand, within CCNA_03849at 4015.373 kb on + strand, within CCNA_03849at 4015.373 kb on + strand, within CCNA_03849at 4015.394 kb on + strand, within CCNA_03849at 4015.428 kb on - strand, within CCNA_03849at 4015.518 kb on + strand, within CCNA_03849at 4015.526 kb on - strand, within CCNA_03849at 4015.565 kb on + strand, within CCNA_03849at 4015.565 kb on + strand, within CCNA_03849at 4015.565 kb on + strand, within CCNA_03849at 4015.575 kb on - strand, within CCNA_03849at 4015.606 kb on - strand, within CCNA_03849at 4015.606 kb on - strand, within CCNA_03849at 4015.613 kb on + strand, within CCNA_03849at 4015.619 kb on - strand, within CCNA_03849at 4015.638 kb on - strand, within CCNA_03849at 4015.638 kb on - strand, within CCNA_03849at 4015.669 kb on + strandat 4015.686 kb on - strand, within CCNA_03849at 4015.904 kb on - strandat 4015.972 kb on + strandat 4015.972 kb on + strandat 4015.972 kb on + strandat 4015.972 kb on + strandat 4015.998 kb on - strandat 4016.006 kb on + strandat 4016.064 kb on + strand, within CCNA_03850at 4016.074 kb on + strand, within CCNA_03850at 4016.082 kb on + strand, within CCNA_03850at 4016.082 kb on + strand, within CCNA_03850at 4016.087 kb on - strand, within CCNA_03850at 4016.107 kb on + strand, within CCNA_03850at 4016.129 kb on - strand, within CCNA_03850at 4016.156 kb on + strand, within CCNA_03850at 4016.163 kb on + strand, within CCNA_03850at 4016.163 kb on + strand, within CCNA_03850at 4016.189 kb on - strand, within CCNA_03850at 4016.205 kb on + strand, within CCNA_03850at 4016.205 kb on + strand, within CCNA_03850at 4016.213 kb on - strand, within CCNA_03850at 4016.215 kb on + strand, within CCNA_03850at 4016.215 kb on + strand, within CCNA_03850at 4016.234 kb on - strand, within CCNA_03850at 4016.244 kb on + strand, within CCNA_03850at 4016.266 kb on + strand, within CCNA_03850at 4016.266 kb on + strand, within CCNA_03850at 4016.323 kb on + strand, within CCNA_03850at 4016.333 kb on + strand, within CCNA_03850at 4016.333 kb on + strand, within CCNA_03850at 4016.333 kb on + strand, within CCNA_03850at 4016.341 kb on - strand, within CCNA_03850at 4016.363 kb on + strand, within CCNA_03850at 4016.363 kb on + strand, within CCNA_03850at 4016.393 kb on + strand, within CCNA_03850at 4016.393 kb on + strand, within CCNA_03850at 4016.401 kb on - strand, within CCNA_03850at 4016.469 kb on + strand, within CCNA_03850at 4016.469 kb on + strand, within CCNA_03850at 4016.469 kb on + strand, within CCNA_03850at 4016.470 kb on - strand, within CCNA_03850at 4016.564 kb on + strandat 4016.572 kb on + strandat 4016.613 kb on + strandat 4016.622 kb on + strandat 4016.688 kb on - strand, within CCNA_03851at 4016.701 kb on - strand, within CCNA_03851at 4016.813 kb on + strand, within CCNA_03851at 4016.841 kb on + strand, within CCNA_03851at 4016.856 kb on + strand, within CCNA_03851at 4016.875 kb on + strand, within CCNA_03851at 4016.888 kb on - strandat 4016.944 kb on - strand, within CCNA_03851

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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4,014,003 + +0.7
4,014,007 + +1.3
4,014,013 - -0.6
4,014,014 + +0.3
4,014,014 + -0.2
4,014,015 - +0.2
4,014,069 - CCNA_03848 0.12 -0.5
4,014,069 - CCNA_03848 0.12 -0.9
4,014,086 + CCNA_03848 0.14 -1.8
4,014,089 - CCNA_03848 0.15 -1.7
4,014,101 + CCNA_03848 0.16 -0.1
4,014,107 + CCNA_03848 0.17 -1.2
4,014,107 + CCNA_03848 0.17 +1.9
4,014,107 + CCNA_03848 0.17 +0.1
4,014,107 + CCNA_03848 0.17 +0.5
4,014,107 + CCNA_03848 0.17 -1.0
4,014,107 + CCNA_03848 0.17 +0.1
4,014,107 + CCNA_03848 0.17 -1.6
4,014,107 + CCNA_03848 0.17 -1.8
4,014,107 + CCNA_03848 0.17 -1.6
4,014,107 + CCNA_03848 0.17 -0.5
4,014,107 + CCNA_03848 0.17 +0.5
4,014,107 + CCNA_03848 0.17 -0.5
4,014,107 + CCNA_03848 0.17 -0.7
4,014,107 + CCNA_03848 0.17 +0.4
4,014,107 + CCNA_03848 0.17 -1.5
4,014,107 + CCNA_03848 0.17 +0.8
4,014,107 + CCNA_03848 0.17 -0.4
4,014,115 - CCNA_03848 0.18 +0.0
4,014,115 - CCNA_03848 0.18 -1.3
4,014,115 - CCNA_03848 0.18 -0.7
4,014,115 - CCNA_03848 0.18 -1.5
4,014,115 - CCNA_03848 0.18 -0.1
4,014,115 - CCNA_03848 0.18 +0.4
4,014,115 - CCNA_03848 0.18 -0.5
4,014,115 - CCNA_03848 0.18 -1.0
4,014,115 - CCNA_03848 0.18 -0.4
4,014,115 - CCNA_03848 0.18 -1.1
4,014,115 - CCNA_03848 0.18 +0.2
4,014,115 - CCNA_03848 0.18 +0.6
4,014,115 - CCNA_03848 0.18 +0.2
4,014,115 - CCNA_03848 0.18 +0.6
4,014,115 - CCNA_03848 0.18 +0.9
4,014,115 - CCNA_03848 0.18 -0.3
4,014,115 - CCNA_03848 0.18 +0.2
4,014,115 - CCNA_03848 0.18 +1.1
4,014,115 - CCNA_03848 0.18 -1.7
4,014,115 - CCNA_03848 0.18 +0.4
4,014,115 - CCNA_03848 0.18 +0.8
4,014,115 - CCNA_03848 0.18 -0.6
4,014,115 - CCNA_03848 0.18 -0.4
4,014,115 - CCNA_03848 0.18 +0.7
4,014,133 + CCNA_03848 0.20 +0.2
4,014,155 + CCNA_03848 0.22 -0.4
4,014,162 - CCNA_03848 0.23 +0.2
4,014,231 + CCNA_03848 0.31 -1.5
4,014,312 + CCNA_03848 0.41 -1.2
4,014,312 + CCNA_03848 0.41 -2.4
4,014,315 - CCNA_03848 0.41 -1.0
4,014,317 + CCNA_03848 0.41 +0.6
4,014,323 + CCNA_03848 0.42 -0.9
4,014,323 + CCNA_03848 0.42 -0.2
4,014,398 - CCNA_03848 0.51 +3.3
4,014,410 - CCNA_03848 0.52 -1.2
4,014,416 + CCNA_03848 0.53 +1.9
4,014,441 - CCNA_03848 0.56 -0.1
4,014,485 - CCNA_03848 0.61 +0.1
4,014,523 + CCNA_03848 0.65 +0.5
4,014,523 + CCNA_03848 0.65 -0.9
4,014,531 - CCNA_03848 0.66 +1.1
4,014,545 + CCNA_03848 0.68 -0.9
4,014,592 - CCNA_03848 0.73 -0.5
4,014,594 + CCNA_03848 0.74 -1.1
4,014,602 - CCNA_03848 0.74 +0.6
4,014,636 + CCNA_03848 0.78 -1.1
4,014,641 + CCNA_03848 0.79 +1.5
4,014,643 - CCNA_03848 0.79 +2.0
4,014,644 - CCNA_03848 0.79 +0.5
4,014,644 - CCNA_03848 0.79 +0.4
4,014,670 + CCNA_03848 0.82 +0.2
4,014,673 - CCNA_03848 0.83 +1.1
4,014,684 + CCNA_03848 0.84 +0.6
4,014,684 + CCNA_03848 0.84 +0.5
4,014,698 - CCNA_03848 0.86 -1.7
4,014,703 - CCNA_03848 0.86 -0.1
4,014,705 - CCNA_03848 0.86 +0.7
4,014,715 + CCNA_03848 0.88 -1.0
4,014,744 + -0.3
4,014,759 + -0.5
4,014,759 + -1.3
4,014,792 + +0.8
4,014,811 - +1.0
4,014,836 + -0.3
4,014,836 + -0.5
4,014,836 + -1.0
4,014,836 + +1.4
4,014,841 + -0.5
4,014,844 - -0.4
4,014,844 - +0.3
4,014,844 - +0.8
4,014,844 - +0.8
4,014,844 - -0.4
4,014,844 - +1.1
4,014,844 - -0.7
4,014,844 - +0.1
4,014,854 - -0.3
4,014,859 + -1.5
4,014,863 - -0.6
4,014,867 + -0.9
4,014,880 - -1.9
4,014,930 - +0.3
4,014,935 + +2.0
4,015,033 + +1.4
4,015,044 + +1.5
4,015,047 - +1.4
4,015,060 - -0.5
4,015,065 - CCNA_03849 0.10 +1.4
4,015,065 - CCNA_03849 0.10 +2.3
4,015,100 + CCNA_03849 0.14 +3.7
4,015,103 - CCNA_03849 0.14 -0.4
4,015,141 - CCNA_03849 0.18 +3.1
4,015,193 + CCNA_03849 0.23 +2.7
4,015,312 - CCNA_03849 0.35 -0.3
4,015,364 - CCNA_03849 0.40 +3.1
4,015,368 + CCNA_03849 0.41 +1.1
4,015,373 + CCNA_03849 0.41 +0.2
4,015,373 + CCNA_03849 0.41 +1.8
4,015,394 + CCNA_03849 0.43 +0.3
4,015,428 - CCNA_03849 0.47 -0.4
4,015,518 + CCNA_03849 0.56 +1.1
4,015,526 - CCNA_03849 0.57 -0.2
4,015,565 + CCNA_03849 0.61 +2.7
4,015,565 + CCNA_03849 0.61 +1.0
4,015,565 + CCNA_03849 0.61 +1.8
4,015,575 - CCNA_03849 0.62 +1.0
4,015,606 - CCNA_03849 0.65 -0.7
4,015,606 - CCNA_03849 0.65 -0.5
4,015,613 + CCNA_03849 0.65 +2.0
4,015,619 - CCNA_03849 0.66 +0.6
4,015,638 - CCNA_03849 0.68 -0.7
4,015,638 - CCNA_03849 0.68 +0.7
4,015,669 + +3.3
4,015,686 - CCNA_03849 0.73 +0.5
4,015,904 - +0.9
4,015,972 + -3.0
4,015,972 + -1.4
4,015,972 + -1.8
4,015,972 + -1.9
4,015,998 - -1.4
4,016,006 + -2.3
4,016,064 + CCNA_03850 0.17 -3.1
4,016,074 + CCNA_03850 0.19 -2.8
4,016,082 + CCNA_03850 0.20 -1.7
4,016,082 + CCNA_03850 0.20 -1.2
4,016,087 - CCNA_03850 0.21 -2.7
4,016,107 + CCNA_03850 0.25 -2.2
4,016,129 - CCNA_03850 0.28 -0.7
4,016,156 + CCNA_03850 0.33 -2.1
4,016,163 + CCNA_03850 0.34 +0.7
4,016,163 + CCNA_03850 0.34 -1.5
4,016,189 - CCNA_03850 0.38 -1.6
4,016,205 + CCNA_03850 0.41 -2.4
4,016,205 + CCNA_03850 0.41 -1.1
4,016,213 - CCNA_03850 0.42 -0.6
4,016,215 + CCNA_03850 0.43 -2.7
4,016,215 + CCNA_03850 0.43 -2.4
4,016,234 - CCNA_03850 0.46 +0.7
4,016,244 + CCNA_03850 0.48 -1.0
4,016,266 + CCNA_03850 0.51 +0.7
4,016,266 + CCNA_03850 0.51 -2.0
4,016,323 + CCNA_03850 0.61 -3.7
4,016,333 + CCNA_03850 0.63 +0.3
4,016,333 + CCNA_03850 0.63 -2.8
4,016,333 + CCNA_03850 0.63 -3.3
4,016,341 - CCNA_03850 0.64 -0.7
4,016,363 + CCNA_03850 0.68 -0.9
4,016,363 + CCNA_03850 0.68 -2.7
4,016,393 + CCNA_03850 0.73 -3.0
4,016,393 + CCNA_03850 0.73 +0.4
4,016,401 - CCNA_03850 0.74 -2.3
4,016,469 + CCNA_03850 0.86 -2.6
4,016,469 + CCNA_03850 0.86 -3.2
4,016,469 + CCNA_03850 0.86 -2.5
4,016,470 - CCNA_03850 0.86 -1.0
4,016,564 + +1.2
4,016,572 + -2.1
4,016,613 + -3.1
4,016,622 + -2.9
4,016,688 - CCNA_03851 0.19 -2.8
4,016,701 - CCNA_03851 0.21 -4.0
4,016,813 + CCNA_03851 0.39 -3.7
4,016,841 + CCNA_03851 0.43 -1.1
4,016,856 + CCNA_03851 0.45 -2.2
4,016,875 + CCNA_03851 0.48 -3.0
4,016,888 - +1.7
4,016,944 - CCNA_03851 0.59 -1.8

Or see this region's nucleotide sequence