Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02995

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02994 and CCNA_02995 are separated by 502 nucleotidesCCNA_02995 and CCNA_02996 overlap by 32 nucleotides CCNA_02994: CCNA_02994 - carbamoyl-phosphate synthase large chain, at 3,146,857 to 3,150,156 _02994 CCNA_02995: CCNA_02995 - glutathione S-transferase, at 3,150,659 to 3,151,312 _02995 CCNA_02996: CCNA_02996 - patatin family phospholipase domain protein, at 3,151,281 to 3,152,474 _02996 Position (kb) 3150 3151 3152Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3150.164 kb on - strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.276 kb on + strandat 3150.284 kb on - strandat 3150.284 kb on - strandat 3150.284 kb on - strandat 3150.284 kb on - strandat 3150.284 kb on - strandat 3150.284 kb on - strandat 3150.284 kb on - strandat 3150.284 kb on - strandat 3150.284 kb on - strandat 3150.290 kb on + strandat 3150.290 kb on + strandat 3150.298 kb on - strandat 3150.312 kb on + strandat 3150.331 kb on - strandat 3150.353 kb on + strandat 3150.361 kb on - strandat 3150.364 kb on - strandat 3150.370 kb on + strandat 3150.379 kb on + strandat 3150.381 kb on + strandat 3150.383 kb on + strandat 3150.393 kb on + strandat 3150.393 kb on + strandat 3150.393 kb on + strandat 3150.393 kb on + strandat 3150.393 kb on + strandat 3150.393 kb on + strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.401 kb on - strandat 3150.403 kb on - strandat 3150.406 kb on + strandat 3150.406 kb on + strandat 3150.406 kb on + strandat 3150.414 kb on - strandat 3150.414 kb on - strandat 3150.414 kb on - strandat 3150.414 kb on - strandat 3150.471 kb on - strandat 3150.488 kb on + strandat 3150.540 kb on + strandat 3150.546 kb on - strandat 3150.573 kb on - strandat 3150.574 kb on - strandat 3150.575 kb on + strandat 3150.583 kb on - strandat 3150.583 kb on - strandat 3150.583 kb on - strandat 3150.583 kb on - strandat 3150.583 kb on - strandat 3150.583 kb on - strandat 3150.585 kb on + strandat 3150.593 kb on - strandat 3150.593 kb on - strandat 3150.593 kb on - strandat 3150.620 kb on + strandat 3150.644 kb on + strandat 3150.650 kb on - strandat 3150.652 kb on - strandat 3150.678 kb on + strandat 3150.682 kb on + strandat 3150.685 kb on - strandat 3150.685 kb on - strandat 3150.685 kb on - strandat 3150.690 kb on - strandat 3150.737 kb on + strand, within CCNA_02995at 3150.749 kb on - strand, within CCNA_02995at 3150.754 kb on - strand, within CCNA_02995at 3150.754 kb on - strandat 3150.757 kb on + strand, within CCNA_02995at 3150.757 kb on + strand, within CCNA_02995at 3150.765 kb on - strand, within CCNA_02995at 3150.765 kb on - strand, within CCNA_02995at 3150.767 kb on + strand, within CCNA_02995at 3150.776 kb on + strand, within CCNA_02995at 3150.779 kb on - strand, within CCNA_02995at 3150.787 kb on + strand, within CCNA_02995at 3150.795 kb on - strand, within CCNA_02995at 3150.849 kb on + strand, within CCNA_02995at 3150.851 kb on + strand, within CCNA_02995at 3150.867 kb on - strand, within CCNA_02995at 3150.878 kb on + strand, within CCNA_02995at 3150.883 kb on + strand, within CCNA_02995at 3150.888 kb on + strand, within CCNA_02995at 3150.898 kb on + strand, within CCNA_02995at 3150.937 kb on - strand, within CCNA_02995at 3150.946 kb on + strand, within CCNA_02995at 3150.970 kb on - strand, within CCNA_02995at 3150.980 kb on - strand, within CCNA_02995at 3150.986 kb on + strand, within CCNA_02995at 3150.994 kb on - strand, within CCNA_02995at 3151.027 kb on + strand, within CCNA_02995at 3151.027 kb on + strand, within CCNA_02995at 3151.027 kb on + strand, within CCNA_02995at 3151.027 kb on + strand, within CCNA_02995at 3151.027 kb on + strand, within CCNA_02995at 3151.027 kb on + strand, within CCNA_02995at 3151.027 kb on + strand, within CCNA_02995at 3151.027 kb on + strand, within CCNA_02995at 3151.030 kb on - strand, within CCNA_02995at 3151.035 kb on - strand, within CCNA_02995at 3151.035 kb on - strand, within CCNA_02995at 3151.035 kb on - strand, within CCNA_02995at 3151.035 kb on - strand, within CCNA_02995at 3151.035 kb on - strand, within CCNA_02995at 3151.035 kb on - strand, within CCNA_02995at 3151.035 kb on - strand, within CCNA_02995at 3151.040 kb on - strand, within CCNA_02995at 3151.048 kb on + strand, within CCNA_02995at 3151.048 kb on + strand, within CCNA_02995at 3151.048 kb on + strand, within CCNA_02995at 3151.048 kb on + strand, within CCNA_02995at 3151.048 kb on + strand, within CCNA_02995at 3151.048 kb on + strand, within CCNA_02995at 3151.048 kb on + strand, within CCNA_02995at 3151.048 kb on + strand, within CCNA_02995at 3151.048 kb on + strand, within CCNA_02995at 3151.056 kb on - strand, within CCNA_02995at 3151.056 kb on - strand, within CCNA_02995at 3151.056 kb on - strand, within CCNA_02995at 3151.056 kb on - strand, within CCNA_02995at 3151.056 kb on - strand, within CCNA_02995at 3151.067 kb on - strand, within CCNA_02995at 3151.087 kb on + strand, within CCNA_02995at 3151.113 kb on + strand, within CCNA_02995at 3151.118 kb on - strand, within CCNA_02995at 3151.176 kb on - strand, within CCNA_02995at 3151.183 kb on + strand, within CCNA_02995at 3151.200 kb on + strand, within CCNA_02995at 3151.208 kb on - strand, within CCNA_02995at 3151.264 kb on - strandat 3151.279 kb on + strandat 3151.306 kb on + strandat 3151.321 kb on + strandat 3151.321 kb on + strandat 3151.321 kb on + strandat 3151.329 kb on - strandat 3151.329 kb on - strandat 3151.329 kb on - strandat 3151.329 kb on - strandat 3151.329 kb on - strandat 3151.329 kb on - strandat 3151.339 kb on - strandat 3151.371 kb on - strandat 3151.379 kb on + strandat 3151.379 kb on + strandat 3151.379 kb on + strandat 3151.379 kb on + strandat 3151.379 kb on + strandat 3151.379 kb on + strandat 3151.379 kb on + strandat 3151.379 kb on + strandat 3151.379 kb on + strandat 3151.379 kb on + strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.387 kb on - strandat 3151.389 kb on - strandat 3151.390 kb on + strandat 3151.420 kb on - strand, within CCNA_02996at 3151.425 kb on + strand, within CCNA_02996at 3151.433 kb on - strand, within CCNA_02996at 3151.433 kb on - strand, within CCNA_02996at 3151.444 kb on + strand, within CCNA_02996at 3151.463 kb on + strand, within CCNA_02996at 3151.473 kb on + strand, within CCNA_02996at 3151.487 kb on - strand, within CCNA_02996at 3151.489 kb on - strand, within CCNA_02996at 3151.496 kb on + strand, within CCNA_02996at 3151.497 kb on + strand, within CCNA_02996at 3151.563 kb on + strand, within CCNA_02996at 3151.563 kb on + strand, within CCNA_02996at 3151.571 kb on - strand, within CCNA_02996at 3151.571 kb on - strand, within CCNA_02996at 3151.593 kb on - strand, within CCNA_02996at 3151.593 kb on - strand, within CCNA_02996at 3151.596 kb on + strand, within CCNA_02996at 3151.596 kb on + strand, within CCNA_02996at 3151.597 kb on - strand, within CCNA_02996at 3151.637 kb on - strand, within CCNA_02996at 3151.648 kb on - strand, within CCNA_02996at 3151.655 kb on + strand, within CCNA_02996at 3151.659 kb on - strand, within CCNA_02996at 3151.686 kb on + strand, within CCNA_02996at 3151.694 kb on - strand, within CCNA_02996at 3151.694 kb on - strand, within CCNA_02996at 3151.707 kb on - strand, within CCNA_02996at 3151.814 kb on + strand, within CCNA_02996at 3151.875 kb on + strand, within CCNA_02996at 3151.920 kb on + strand, within CCNA_02996at 3151.933 kb on + strand, within CCNA_02996at 3151.941 kb on - strand, within CCNA_02996at 3151.957 kb on + strand, within CCNA_02996at 3151.965 kb on - strand, within CCNA_02996at 3152.039 kb on + strand, within CCNA_02996at 3152.039 kb on + strand, within CCNA_02996at 3152.039 kb on + strand, within CCNA_02996at 3152.047 kb on - strand, within CCNA_02996at 3152.083 kb on + strand, within CCNA_02996at 3152.090 kb on - strand, within CCNA_02996at 3152.091 kb on - strand, within CCNA_02996at 3152.091 kb on - strand, within CCNA_02996at 3152.091 kb on - strand, within CCNA_02996at 3152.114 kb on - strand, within CCNA_02996at 3152.115 kb on - strand, within CCNA_02996at 3152.135 kb on - strand, within CCNA_02996at 3152.195 kb on + strand, within CCNA_02996at 3152.234 kb on + strand, within CCNA_02996at 3152.242 kb on - strand, within CCNA_02996at 3152.264 kb on - strand, within CCNA_02996at 3152.297 kb on - strand, within CCNA_02996at 3152.297 kb on - strand, within CCNA_02996at 3152.297 kb on - strand, within CCNA_02996at 3152.310 kb on + strand, within CCNA_02996

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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3,150,164 - +0.8
3,150,276 + +0.8
3,150,276 + +0.5
3,150,276 + +0.6
3,150,276 + +1.5
3,150,276 + +2.1
3,150,276 + -0.5
3,150,276 + +0.5
3,150,276 + +0.8
3,150,276 + +0.7
3,150,276 + +0.5
3,150,276 + -0.4
3,150,284 - +0.5
3,150,284 - -1.3
3,150,284 - -1.4
3,150,284 - -0.2
3,150,284 - -0.8
3,150,284 - -0.7
3,150,284 - +1.0
3,150,284 - +0.1
3,150,284 - +0.6
3,150,290 + +0.2
3,150,290 + -1.7
3,150,298 - -1.9
3,150,312 + +0.8
3,150,331 - -1.7
3,150,353 + +0.5
3,150,361 - -0.3
3,150,364 - -1.7
3,150,370 + -2.0
3,150,379 + +0.1
3,150,381 + -0.3
3,150,383 + +1.1
3,150,393 + +0.7
3,150,393 + -0.9
3,150,393 + +1.5
3,150,393 + -0.2
3,150,393 + +3.1
3,150,393 + +0.7
3,150,401 - -2.4
3,150,401 - -0.5
3,150,401 - +0.3
3,150,401 - -0.5
3,150,401 - -0.7
3,150,401 - +1.2
3,150,401 - -1.2
3,150,401 - +1.8
3,150,401 - +0.5
3,150,401 - -1.1
3,150,401 - +0.0
3,150,401 - +0.7
3,150,401 - +1.3
3,150,401 - -1.0
3,150,403 - +1.5
3,150,406 + -0.2
3,150,406 + -1.4
3,150,406 + +0.1
3,150,414 - +2.5
3,150,414 - -0.6
3,150,414 - +1.0
3,150,414 - -0.7
3,150,471 - -0.9
3,150,488 + +0.7
3,150,540 + +0.5
3,150,546 - -1.6
3,150,573 - +0.8
3,150,574 - +0.4
3,150,575 + -1.8
3,150,583 - -0.2
3,150,583 - -0.1
3,150,583 - +0.3
3,150,583 - +0.1
3,150,583 - +0.9
3,150,583 - -0.1
3,150,585 + +0.4
3,150,593 - -1.0
3,150,593 - -0.8
3,150,593 - -0.2
3,150,620 + -0.5
3,150,644 + -0.6
3,150,650 - -0.6
3,150,652 - +1.1
3,150,678 + -1.0
3,150,682 + -0.9
3,150,685 - -0.8
3,150,685 - -1.4
3,150,685 - +0.1
3,150,690 - +0.9
3,150,737 + CCNA_02995 0.12 -0.8
3,150,749 - CCNA_02995 0.14 -1.2
3,150,754 - CCNA_02995 0.15 +0.2
3,150,754 - +1.1
3,150,757 + CCNA_02995 0.15 -1.1
3,150,757 + CCNA_02995 0.15 +1.9
3,150,765 - CCNA_02995 0.16 +1.6
3,150,765 - CCNA_02995 0.16 -1.7
3,150,767 + CCNA_02995 0.17 -0.4
3,150,776 + CCNA_02995 0.18 +0.1
3,150,779 - CCNA_02995 0.18 -0.9
3,150,787 + CCNA_02995 0.20 +1.3
3,150,795 - CCNA_02995 0.21 -0.4
3,150,849 + CCNA_02995 0.29 +1.0
3,150,851 + CCNA_02995 0.29 +1.7
3,150,867 - CCNA_02995 0.32 -0.7
3,150,878 + CCNA_02995 0.33 +1.5
3,150,883 + CCNA_02995 0.34 +0.0
3,150,888 + CCNA_02995 0.35 +1.3
3,150,898 + CCNA_02995 0.37 -1.4
3,150,937 - CCNA_02995 0.43 -1.9
3,150,946 + CCNA_02995 0.44 +1.0
3,150,970 - CCNA_02995 0.48 -1.6
3,150,980 - CCNA_02995 0.49 -0.6
3,150,986 + CCNA_02995 0.50 +0.1
3,150,994 - CCNA_02995 0.51 +2.1
3,151,027 + CCNA_02995 0.56 -1.9
3,151,027 + CCNA_02995 0.56 +0.4
3,151,027 + CCNA_02995 0.56 -1.1
3,151,027 + CCNA_02995 0.56 -0.7
3,151,027 + CCNA_02995 0.56 -0.6
3,151,027 + CCNA_02995 0.56 +1.1
3,151,027 + CCNA_02995 0.56 +0.6
3,151,027 + CCNA_02995 0.56 +1.4
3,151,030 - CCNA_02995 0.57 -0.4
3,151,035 - CCNA_02995 0.57 +0.9
3,151,035 - CCNA_02995 0.57 +0.6
3,151,035 - CCNA_02995 0.57 +1.0
3,151,035 - CCNA_02995 0.57 +1.0
3,151,035 - CCNA_02995 0.57 -1.3
3,151,035 - CCNA_02995 0.57 +0.8
3,151,035 - CCNA_02995 0.57 +0.2
3,151,040 - CCNA_02995 0.58 -0.2
3,151,048 + CCNA_02995 0.59 -1.2
3,151,048 + CCNA_02995 0.59 +1.5
3,151,048 + CCNA_02995 0.59 +0.3
3,151,048 + CCNA_02995 0.59 +2.1
3,151,048 + CCNA_02995 0.59 -1.0
3,151,048 + CCNA_02995 0.59 +1.3
3,151,048 + CCNA_02995 0.59 -0.7
3,151,048 + CCNA_02995 0.59 -0.1
3,151,048 + CCNA_02995 0.59 -1.1
3,151,056 - CCNA_02995 0.61 +1.4
3,151,056 - CCNA_02995 0.61 +0.6
3,151,056 - CCNA_02995 0.61 +1.9
3,151,056 - CCNA_02995 0.61 -0.5
3,151,056 - CCNA_02995 0.61 -0.6
3,151,067 - CCNA_02995 0.62 -0.7
3,151,087 + CCNA_02995 0.65 +1.5
3,151,113 + CCNA_02995 0.69 -2.3
3,151,118 - CCNA_02995 0.70 -1.9
3,151,176 - CCNA_02995 0.79 +0.0
3,151,183 + CCNA_02995 0.80 -0.8
3,151,200 + CCNA_02995 0.83 -0.8
3,151,208 - CCNA_02995 0.84 -2.0
3,151,264 - -2.3
3,151,279 + +0.3
3,151,306 + +0.2
3,151,321 + -0.1
3,151,321 + +0.7
3,151,321 + +0.8
3,151,329 - -0.4
3,151,329 - -0.4
3,151,329 - -0.9
3,151,329 - -0.1
3,151,329 - -0.1
3,151,329 - +1.1
3,151,339 - +0.9
3,151,371 - -0.1
3,151,379 + +2.5
3,151,379 + +1.0
3,151,379 + +1.4
3,151,379 + +0.0
3,151,379 + -0.2
3,151,379 + -0.6
3,151,379 + +0.3
3,151,379 + +0.4
3,151,379 + +1.7
3,151,379 + -0.4
3,151,387 - -0.6
3,151,387 - -0.2
3,151,387 - -0.7
3,151,387 - -1.3
3,151,387 - +0.6
3,151,387 - -0.0
3,151,387 - -0.4
3,151,387 - +1.2
3,151,387 - -0.9
3,151,387 - -0.3
3,151,387 - -0.0
3,151,387 - -0.9
3,151,389 - -0.1
3,151,390 + -1.5
3,151,420 - CCNA_02996 0.12 +1.5
3,151,425 + CCNA_02996 0.12 -1.2
3,151,433 - CCNA_02996 0.13 -0.0
3,151,433 - CCNA_02996 0.13 +0.0
3,151,444 + CCNA_02996 0.14 -1.5
3,151,463 + CCNA_02996 0.15 -1.6
3,151,473 + CCNA_02996 0.16 +0.8
3,151,487 - CCNA_02996 0.17 -0.3
3,151,489 - CCNA_02996 0.17 -1.1
3,151,496 + CCNA_02996 0.18 -1.1
3,151,497 + CCNA_02996 0.18 -0.7
3,151,563 + CCNA_02996 0.24 -0.5
3,151,563 + CCNA_02996 0.24 -1.0
3,151,571 - CCNA_02996 0.24 -0.5
3,151,571 - CCNA_02996 0.24 -0.6
3,151,593 - CCNA_02996 0.26 +0.5
3,151,593 - CCNA_02996 0.26 +1.4
3,151,596 + CCNA_02996 0.26 -0.9
3,151,596 + CCNA_02996 0.26 +1.2
3,151,597 - CCNA_02996 0.26 +1.1
3,151,637 - CCNA_02996 0.30 -1.4
3,151,648 - CCNA_02996 0.31 -1.3
3,151,655 + CCNA_02996 0.31 -0.9
3,151,659 - CCNA_02996 0.32 +0.3
3,151,686 + CCNA_02996 0.34 +0.5
3,151,694 - CCNA_02996 0.35 +1.7
3,151,694 - CCNA_02996 0.35 -0.6
3,151,707 - CCNA_02996 0.36 +0.8
3,151,814 + CCNA_02996 0.45 -2.0
3,151,875 + CCNA_02996 0.50 +3.5
3,151,920 + CCNA_02996 0.54 -0.6
3,151,933 + CCNA_02996 0.55 +0.1
3,151,941 - CCNA_02996 0.55 +0.1
3,151,957 + CCNA_02996 0.57 -0.2
3,151,965 - CCNA_02996 0.57 +0.9
3,152,039 + CCNA_02996 0.63 -1.3
3,152,039 + CCNA_02996 0.63 +0.0
3,152,039 + CCNA_02996 0.63 -1.6
3,152,047 - CCNA_02996 0.64 -0.1
3,152,083 + CCNA_02996 0.67 +0.6
3,152,090 - CCNA_02996 0.68 -0.5
3,152,091 - CCNA_02996 0.68 +1.4
3,152,091 - CCNA_02996 0.68 -0.2
3,152,091 - CCNA_02996 0.68 -0.3
3,152,114 - CCNA_02996 0.70 +0.3
3,152,115 - CCNA_02996 0.70 -1.3
3,152,135 - CCNA_02996 0.72 -0.1
3,152,195 + CCNA_02996 0.77 +1.1
3,152,234 + CCNA_02996 0.80 +0.2
3,152,242 - CCNA_02996 0.80 -0.3
3,152,264 - CCNA_02996 0.82 -0.3
3,152,297 - CCNA_02996 0.85 -0.2
3,152,297 - CCNA_02996 0.85 +2.8
3,152,297 - CCNA_02996 0.85 -3.3
3,152,310 + CCNA_02996 0.86 -0.5

Or see this region's nucleotide sequence