Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02985

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02983 and CCNA_02984 overlap by 4 nucleotidesCCNA_02984 and CCNA_02985 overlap by 1 nucleotidesCCNA_02985 and CCNA_02986 are separated by 10 nucleotides CCNA_02983: CCNA_02983 - polyprenyl-phosphate beta-D-glucosyltransferase, at 3,138,328 to 3,139,320 _02983 CCNA_02984: CCNA_02984 - hypothetical protein, at 3,139,317 to 3,139,760 _02984 CCNA_02985: CCNA_02985 - methyltransferase, at 3,139,760 to 3,140,485 _02985 CCNA_02986: CCNA_02986 - hypothetical protein, at 3,140,496 to 3,142,415 _02986 Position (kb) 3139 3140 3141Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3138.790 kb on + strand, within CCNA_02983at 3138.790 kb on + strand, within CCNA_02983at 3138.790 kb on + strand, within CCNA_02983at 3138.790 kb on + strand, within CCNA_02983at 3138.798 kb on - strand, within CCNA_02983at 3138.830 kb on - strand, within CCNA_02983at 3138.837 kb on + strand, within CCNA_02983at 3138.855 kb on + strand, within CCNA_02983at 3138.880 kb on + strand, within CCNA_02983at 3138.888 kb on + strand, within CCNA_02983at 3138.908 kb on - strand, within CCNA_02983at 3138.918 kb on + strand, within CCNA_02983at 3138.930 kb on + strand, within CCNA_02983at 3138.943 kb on - strand, within CCNA_02983at 3138.944 kb on + strand, within CCNA_02983at 3138.944 kb on + strand, within CCNA_02983at 3138.952 kb on - strand, within CCNA_02983at 3138.958 kb on + strand, within CCNA_02983at 3138.963 kb on + strand, within CCNA_02983at 3138.971 kb on - strand, within CCNA_02983at 3139.018 kb on - strand, within CCNA_02983at 3139.040 kb on + strand, within CCNA_02983at 3139.080 kb on - strand, within CCNA_02983at 3139.100 kb on - strand, within CCNA_02983at 3139.102 kb on + strand, within CCNA_02983at 3139.102 kb on + strand, within CCNA_02983at 3139.107 kb on + strand, within CCNA_02983at 3139.162 kb on + strand, within CCNA_02983at 3139.207 kb on + strandat 3139.207 kb on + strand, within CCNA_02983at 3139.210 kb on - strand, within CCNA_02983at 3139.210 kb on - strand, within CCNA_02983at 3139.267 kb on + strandat 3139.291 kb on + strandat 3139.315 kb on + strandat 3139.332 kb on + strandat 3139.332 kb on + strandat 3139.332 kb on + strandat 3139.332 kb on + strandat 3139.332 kb on + strandat 3139.332 kb on + strandat 3139.340 kb on - strandat 3139.340 kb on - strandat 3139.376 kb on - strand, within CCNA_02984at 3139.376 kb on - strand, within CCNA_02984at 3139.392 kb on + strand, within CCNA_02984at 3139.394 kb on + strand, within CCNA_02984at 3139.423 kb on + strand, within CCNA_02984at 3139.429 kb on + strand, within CCNA_02984at 3139.429 kb on + strand, within CCNA_02984at 3139.506 kb on + strand, within CCNA_02984at 3139.511 kb on + strand, within CCNA_02984at 3139.519 kb on - strand, within CCNA_02984at 3139.526 kb on + strand, within CCNA_02984at 3139.562 kb on + strand, within CCNA_02984at 3139.570 kb on - strand, within CCNA_02984at 3139.593 kb on + strand, within CCNA_02984at 3139.602 kb on - strand, within CCNA_02984at 3139.602 kb on - strand, within CCNA_02984at 3139.606 kb on - strand, within CCNA_02984at 3139.606 kb on - strand, within CCNA_02984at 3139.608 kb on + strand, within CCNA_02984at 3139.613 kb on + strand, within CCNA_02984at 3139.621 kb on - strand, within CCNA_02984at 3139.628 kb on + strand, within CCNA_02984at 3139.634 kb on + strand, within CCNA_02984at 3139.662 kb on + strand, within CCNA_02984at 3139.679 kb on + strand, within CCNA_02984at 3139.735 kb on + strandat 3139.807 kb on + strandat 3139.827 kb on + strandat 3139.973 kb on + strand, within CCNA_02985at 3140.002 kb on + strand, within CCNA_02985at 3140.002 kb on + strand, within CCNA_02985at 3140.035 kb on - strand, within CCNA_02985at 3140.035 kb on - strand, within CCNA_02985at 3140.049 kb on + strand, within CCNA_02985at 3140.049 kb on + strand, within CCNA_02985at 3140.067 kb on + strand, within CCNA_02985at 3140.067 kb on - strand, within CCNA_02985at 3140.075 kb on - strand, within CCNA_02985at 3140.075 kb on - strand, within CCNA_02985at 3140.108 kb on + strand, within CCNA_02985at 3140.116 kb on - strand, within CCNA_02985at 3140.116 kb on - strand, within CCNA_02985at 3140.116 kb on - strand, within CCNA_02985at 3140.116 kb on - strand, within CCNA_02985at 3140.122 kb on - strand, within CCNA_02985at 3140.128 kb on + strand, within CCNA_02985at 3140.136 kb on - strand, within CCNA_02985at 3140.147 kb on + strand, within CCNA_02985at 3140.147 kb on + strand, within CCNA_02985at 3140.150 kb on - strand, within CCNA_02985at 3140.195 kb on + strand, within CCNA_02985at 3140.208 kb on - strand, within CCNA_02985at 3140.215 kb on + strand, within CCNA_02985at 3140.223 kb on - strand, within CCNA_02985at 3140.230 kb on + strand, within CCNA_02985at 3140.233 kb on - strand, within CCNA_02985at 3140.245 kb on + strand, within CCNA_02985at 3140.245 kb on + strand, within CCNA_02985at 3140.245 kb on + strand, within CCNA_02985at 3140.245 kb on + strand, within CCNA_02985at 3140.245 kb on + strand, within CCNA_02985at 3140.245 kb on + strand, within CCNA_02985at 3140.245 kb on + strand, within CCNA_02985at 3140.253 kb on - strand, within CCNA_02985at 3140.253 kb on - strand, within CCNA_02985at 3140.253 kb on - strand, within CCNA_02985at 3140.253 kb on - strand, within CCNA_02985at 3140.253 kb on - strand, within CCNA_02985at 3140.253 kb on - strand, within CCNA_02985at 3140.258 kb on + strand, within CCNA_02985at 3140.302 kb on - strand, within CCNA_02985at 3140.320 kb on + strand, within CCNA_02985at 3140.383 kb on + strand, within CCNA_02985at 3140.383 kb on + strand, within CCNA_02985at 3140.391 kb on - strand, within CCNA_02985at 3140.488 kb on - strandat 3140.488 kb on - strandat 3140.494 kb on + strandat 3140.494 kb on + strandat 3140.501 kb on - strandat 3140.526 kb on + strandat 3140.532 kb on - strandat 3140.564 kb on + strandat 3140.757 kb on + strand, within CCNA_02986at 3140.772 kb on + strand, within CCNA_02986at 3140.772 kb on + strand, within CCNA_02986at 3140.772 kb on + strand, within CCNA_02986at 3140.772 kb on + strand, within CCNA_02986at 3140.778 kb on - strand, within CCNA_02986at 3140.780 kb on - strand, within CCNA_02986at 3140.780 kb on - strand, within CCNA_02986at 3140.811 kb on - strand, within CCNA_02986at 3140.869 kb on - strand, within CCNA_02986at 3140.878 kb on + strand, within CCNA_02986at 3140.911 kb on + strand, within CCNA_02986at 3140.919 kb on - strand, within CCNA_02986at 3140.919 kb on - strand, within CCNA_02986at 3140.919 kb on - strand, within CCNA_02986at 3141.042 kb on + strand, within CCNA_02986at 3141.057 kb on - strand, within CCNA_02986at 3141.059 kb on - strand, within CCNA_02986at 3141.147 kb on - strand, within CCNA_02986at 3141.168 kb on - strand, within CCNA_02986at 3141.200 kb on - strand, within CCNA_02986at 3141.223 kb on + strand, within CCNA_02986at 3141.226 kb on - strand, within CCNA_02986at 3141.231 kb on - strand, within CCNA_02986at 3141.247 kb on - strand, within CCNA_02986at 3141.396 kb on + strand, within CCNA_02986at 3141.404 kb on - strand, within CCNA_02986at 3141.413 kb on + strand, within CCNA_02986at 3141.413 kb on + strand, within CCNA_02986at 3141.461 kb on + strand, within CCNA_02986at 3141.471 kb on - strand, within CCNA_02986at 3141.483 kb on - strand, within CCNA_02986

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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3,138,790 + CCNA_02983 0.47 -1.1
3,138,790 + CCNA_02983 0.47 +2.8
3,138,790 + CCNA_02983 0.47 +2.9
3,138,790 + CCNA_02983 0.47 +1.6
3,138,798 - CCNA_02983 0.47 +1.1
3,138,830 - CCNA_02983 0.51 -0.0
3,138,837 + CCNA_02983 0.51 +1.0
3,138,855 + CCNA_02983 0.53 +2.0
3,138,880 + CCNA_02983 0.56 -0.5
3,138,888 + CCNA_02983 0.56 +0.1
3,138,908 - CCNA_02983 0.58 +1.4
3,138,918 + CCNA_02983 0.59 +1.8
3,138,930 + CCNA_02983 0.61 +0.6
3,138,943 - CCNA_02983 0.62 +0.4
3,138,944 + CCNA_02983 0.62 +1.2
3,138,944 + CCNA_02983 0.62 +1.9
3,138,952 - CCNA_02983 0.63 -1.1
3,138,958 + CCNA_02983 0.63 +2.2
3,138,963 + CCNA_02983 0.64 +0.5
3,138,971 - CCNA_02983 0.65 +0.9
3,139,018 - CCNA_02983 0.69 +1.2
3,139,040 + CCNA_02983 0.72 +2.1
3,139,080 - CCNA_02983 0.76 +0.5
3,139,100 - CCNA_02983 0.78 +0.5
3,139,102 + CCNA_02983 0.78 -0.2
3,139,102 + CCNA_02983 0.78 +1.2
3,139,107 + CCNA_02983 0.78 +0.9
3,139,162 + CCNA_02983 0.84 +1.1
3,139,207 + +1.9
3,139,207 + CCNA_02983 0.89 +1.0
3,139,210 - CCNA_02983 0.89 -0.5
3,139,210 - CCNA_02983 0.89 -0.1
3,139,267 + +1.8
3,139,291 + +1.4
3,139,315 + +0.6
3,139,332 + -0.5
3,139,332 + -0.6
3,139,332 + +1.3
3,139,332 + +0.9
3,139,332 + -0.6
3,139,332 + -0.9
3,139,340 - -1.2
3,139,340 - -0.9
3,139,376 - CCNA_02984 0.13 -1.2
3,139,376 - CCNA_02984 0.13 -0.7
3,139,392 + CCNA_02984 0.17 +1.1
3,139,394 + CCNA_02984 0.17 +1.0
3,139,423 + CCNA_02984 0.24 +2.6
3,139,429 + CCNA_02984 0.25 -0.5
3,139,429 + CCNA_02984 0.25 -0.3
3,139,506 + CCNA_02984 0.43 +0.7
3,139,511 + CCNA_02984 0.44 -0.9
3,139,519 - CCNA_02984 0.45 +0.1
3,139,526 + CCNA_02984 0.47 -1.2
3,139,562 + CCNA_02984 0.55 +0.2
3,139,570 - CCNA_02984 0.57 +1.9
3,139,593 + CCNA_02984 0.62 -0.2
3,139,602 - CCNA_02984 0.64 -0.4
3,139,602 - CCNA_02984 0.64 -0.1
3,139,606 - CCNA_02984 0.65 +0.9
3,139,606 - CCNA_02984 0.65 -1.9
3,139,608 + CCNA_02984 0.66 +1.7
3,139,613 + CCNA_02984 0.67 +1.1
3,139,621 - CCNA_02984 0.68 -0.3
3,139,628 + CCNA_02984 0.70 +0.4
3,139,634 + CCNA_02984 0.71 -0.1
3,139,662 + CCNA_02984 0.78 +1.1
3,139,679 + CCNA_02984 0.82 +1.9
3,139,735 + +0.9
3,139,807 + +0.9
3,139,827 + +1.3
3,139,973 + CCNA_02985 0.29 +1.9
3,140,002 + CCNA_02985 0.33 +2.0
3,140,002 + CCNA_02985 0.33 +3.0
3,140,035 - CCNA_02985 0.38 -2.5
3,140,035 - CCNA_02985 0.38 -0.1
3,140,049 + CCNA_02985 0.40 +2.1
3,140,049 + CCNA_02985 0.40 +1.9
3,140,067 + CCNA_02985 0.42 +0.6
3,140,067 - CCNA_02985 0.42 -0.9
3,140,075 - CCNA_02985 0.43 +1.0
3,140,075 - CCNA_02985 0.43 -0.4
3,140,108 + CCNA_02985 0.48 -0.2
3,140,116 - CCNA_02985 0.49 +1.1
3,140,116 - CCNA_02985 0.49 +1.2
3,140,116 - CCNA_02985 0.49 +0.5
3,140,116 - CCNA_02985 0.49 -0.9
3,140,122 - CCNA_02985 0.50 +1.8
3,140,128 + CCNA_02985 0.51 +1.3
3,140,136 - CCNA_02985 0.52 +0.1
3,140,147 + CCNA_02985 0.53 +1.2
3,140,147 + CCNA_02985 0.53 +1.3
3,140,150 - CCNA_02985 0.54 +0.7
3,140,195 + CCNA_02985 0.60 +2.5
3,140,208 - CCNA_02985 0.62 +1.2
3,140,215 + CCNA_02985 0.63 +2.4
3,140,223 - CCNA_02985 0.64 +0.9
3,140,230 + CCNA_02985 0.65 +0.5
3,140,233 - CCNA_02985 0.65 +3.5
3,140,245 + CCNA_02985 0.67 +2.0
3,140,245 + CCNA_02985 0.67 +1.1
3,140,245 + CCNA_02985 0.67 +1.8
3,140,245 + CCNA_02985 0.67 -0.1
3,140,245 + CCNA_02985 0.67 +2.6
3,140,245 + CCNA_02985 0.67 +1.5
3,140,245 + CCNA_02985 0.67 +0.7
3,140,253 - CCNA_02985 0.68 +0.4
3,140,253 - CCNA_02985 0.68 -0.1
3,140,253 - CCNA_02985 0.68 +1.7
3,140,253 - CCNA_02985 0.68 +0.4
3,140,253 - CCNA_02985 0.68 +0.7
3,140,253 - CCNA_02985 0.68 +0.4
3,140,258 + CCNA_02985 0.69 +0.9
3,140,302 - CCNA_02985 0.75 +1.6
3,140,320 + CCNA_02985 0.77 +1.0
3,140,383 + CCNA_02985 0.86 +2.5
3,140,383 + CCNA_02985 0.86 +2.2
3,140,391 - CCNA_02985 0.87 +0.9
3,140,488 - +0.2
3,140,488 - -0.4
3,140,494 + +0.4
3,140,494 + -0.3
3,140,501 - -0.9
3,140,526 + +0.2
3,140,532 - +1.1
3,140,564 + +0.4
3,140,757 + CCNA_02986 0.14 +1.1
3,140,772 + CCNA_02986 0.14 +1.3
3,140,772 + CCNA_02986 0.14 +0.0
3,140,772 + CCNA_02986 0.14 +2.6
3,140,772 + CCNA_02986 0.14 +1.1
3,140,778 - CCNA_02986 0.15 +2.5
3,140,780 - CCNA_02986 0.15 +0.9
3,140,780 - CCNA_02986 0.15 +1.6
3,140,811 - CCNA_02986 0.16 +0.7
3,140,869 - CCNA_02986 0.19 +1.5
3,140,878 + CCNA_02986 0.20 -1.9
3,140,911 + CCNA_02986 0.22 +0.4
3,140,919 - CCNA_02986 0.22 +0.6
3,140,919 - CCNA_02986 0.22 +2.4
3,140,919 - CCNA_02986 0.22 +0.8
3,141,042 + CCNA_02986 0.28 +0.0
3,141,057 - CCNA_02986 0.29 +0.1
3,141,059 - CCNA_02986 0.29 +1.1
3,141,147 - CCNA_02986 0.34 +1.8
3,141,168 - CCNA_02986 0.35 +2.4
3,141,200 - CCNA_02986 0.37 +2.0
3,141,223 + CCNA_02986 0.38 +0.7
3,141,226 - CCNA_02986 0.38 +1.9
3,141,231 - CCNA_02986 0.38 +0.6
3,141,247 - CCNA_02986 0.39 +1.8
3,141,396 + CCNA_02986 0.47 -1.5
3,141,404 - CCNA_02986 0.47 +2.3
3,141,413 + CCNA_02986 0.48 +0.2
3,141,413 + CCNA_02986 0.48 +1.0
3,141,461 + CCNA_02986 0.50 -1.1
3,141,471 - CCNA_02986 0.51 +2.1
3,141,483 - CCNA_02986 0.51 +0.9

Or see this region's nucleotide sequence