Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02702

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02701 and CCNA_02702 overlap by 8 nucleotidesCCNA_02702 and CCNA_02703 overlap by 1 nucleotidesCCNA_02703 and CCNA_02704 are separated by 335 nucleotides CCNA_02701: CCNA_02701 - xanthine dehydrogenase large subunit, at 2,854,982 to 2,857,321 _02701 CCNA_02702: CCNA_02702 - xanthine dehydrogenase small subunit, at 2,857,314 to 2,858,762 _02702 CCNA_02703: CCNA_02703 - 5-hydroxyisourate hydrolase, at 2,858,762 to 2,859,109 _02703 CCNA_02704: CCNA_02704 - NADP-dependent malic enzyme, at 2,859,445 to 2,861,721 _02704 Position (kb) 2857 2858 2859Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2856.336 kb on + strand, within CCNA_02701at 2856.336 kb on + strand, within CCNA_02701at 2856.336 kb on + strand, within CCNA_02701at 2856.425 kb on - strand, within CCNA_02701at 2856.523 kb on - strand, within CCNA_02701at 2856.542 kb on - strand, within CCNA_02701at 2856.599 kb on + strand, within CCNA_02701at 2856.627 kb on - strand, within CCNA_02701at 2856.635 kb on - strand, within CCNA_02701at 2856.637 kb on + strand, within CCNA_02701at 2856.637 kb on + strand, within CCNA_02701at 2856.642 kb on + strand, within CCNA_02701at 2856.642 kb on + strand, within CCNA_02701at 2856.645 kb on - strand, within CCNA_02701at 2856.689 kb on - strand, within CCNA_02701at 2856.704 kb on + strand, within CCNA_02701at 2856.704 kb on + strandat 2856.712 kb on - strand, within CCNA_02701at 2856.751 kb on - strand, within CCNA_02701at 2856.756 kb on + strand, within CCNA_02701at 2856.766 kb on + strand, within CCNA_02701at 2856.814 kb on - strand, within CCNA_02701at 2856.872 kb on - strand, within CCNA_02701at 2856.884 kb on + strand, within CCNA_02701at 2856.921 kb on - strand, within CCNA_02701at 2856.989 kb on + strand, within CCNA_02701at 2856.989 kb on + strand, within CCNA_02701at 2856.989 kb on + strand, within CCNA_02701at 2856.997 kb on - strand, within CCNA_02701at 2856.997 kb on - strand, within CCNA_02701at 2856.997 kb on - strand, within CCNA_02701at 2857.096 kb on - strandat 2857.189 kb on - strandat 2857.194 kb on + strandat 2857.219 kb on - strandat 2857.245 kb on + strandat 2857.253 kb on - strandat 2857.258 kb on - strandat 2857.264 kb on - strandat 2857.282 kb on - strandat 2857.287 kb on + strandat 2857.344 kb on + strandat 2857.346 kb on + strandat 2857.372 kb on + strandat 2857.380 kb on - strandat 2857.382 kb on + strandat 2857.404 kb on - strandat 2857.446 kb on - strandat 2857.489 kb on + strand, within CCNA_02702at 2857.489 kb on + strand, within CCNA_02702at 2857.489 kb on + strand, within CCNA_02702at 2857.489 kb on + strand, within CCNA_02702at 2857.497 kb on - strand, within CCNA_02702at 2857.497 kb on - strand, within CCNA_02702at 2857.497 kb on - strand, within CCNA_02702at 2857.497 kb on - strand, within CCNA_02702at 2857.497 kb on - strand, within CCNA_02702at 2857.497 kb on - strand, within CCNA_02702at 2857.503 kb on + strand, within CCNA_02702at 2857.503 kb on + strand, within CCNA_02702at 2857.511 kb on - strand, within CCNA_02702at 2857.562 kb on - strand, within CCNA_02702at 2857.595 kb on - strand, within CCNA_02702at 2857.619 kb on - strand, within CCNA_02702at 2857.624 kb on + strand, within CCNA_02702at 2857.637 kb on - strand, within CCNA_02702at 2857.637 kb on - strand, within CCNA_02702at 2857.650 kb on - strand, within CCNA_02702at 2857.650 kb on - strand, within CCNA_02702at 2857.650 kb on - strand, within CCNA_02702at 2857.652 kb on + strand, within CCNA_02702at 2857.668 kb on - strand, within CCNA_02702at 2857.768 kb on + strand, within CCNA_02702at 2857.846 kb on + strand, within CCNA_02702at 2857.846 kb on + strand, within CCNA_02702at 2857.895 kb on + strandat 2857.900 kb on + strand, within CCNA_02702at 2857.926 kb on - strand, within CCNA_02702at 2857.928 kb on + strand, within CCNA_02702at 2857.936 kb on - strand, within CCNA_02702at 2857.936 kb on - strand, within CCNA_02702at 2857.936 kb on - strand, within CCNA_02702at 2857.948 kb on - strand, within CCNA_02702at 2857.974 kb on - strand, within CCNA_02702at 2857.976 kb on + strand, within CCNA_02702at 2857.976 kb on + strand, within CCNA_02702at 2857.997 kb on - strand, within CCNA_02702at 2858.003 kb on - strand, within CCNA_02702at 2858.006 kb on - strand, within CCNA_02702at 2858.016 kb on - strand, within CCNA_02702at 2858.043 kb on + strand, within CCNA_02702at 2858.081 kb on + strand, within CCNA_02702at 2858.089 kb on - strand, within CCNA_02702at 2858.089 kb on - strand, within CCNA_02702at 2858.089 kb on - strand, within CCNA_02702at 2858.119 kb on + strand, within CCNA_02702at 2858.119 kb on + strand, within CCNA_02702at 2858.148 kb on - strand, within CCNA_02702at 2858.219 kb on - strand, within CCNA_02702at 2858.220 kb on - strand, within CCNA_02702at 2858.230 kb on - strand, within CCNA_02702at 2858.274 kb on - strand, within CCNA_02702at 2858.289 kb on - strand, within CCNA_02702at 2858.290 kb on + strand, within CCNA_02702at 2858.311 kb on - strand, within CCNA_02702at 2858.342 kb on - strand, within CCNA_02702at 2858.370 kb on + strand, within CCNA_02702at 2858.385 kb on + strand, within CCNA_02702at 2858.393 kb on - strand, within CCNA_02702at 2858.393 kb on - strand, within CCNA_02702at 2858.454 kb on + strand, within CCNA_02702at 2858.454 kb on + strand, within CCNA_02702at 2858.462 kb on - strand, within CCNA_02702at 2858.474 kb on - strand, within CCNA_02702at 2858.474 kb on - strand, within CCNA_02702at 2858.485 kb on - strand, within CCNA_02702at 2858.485 kb on - strand, within CCNA_02702at 2858.490 kb on - strand, within CCNA_02702at 2858.547 kb on - strand, within CCNA_02702at 2858.549 kb on - strand, within CCNA_02702at 2858.564 kb on - strand, within CCNA_02702at 2858.601 kb on + strand, within CCNA_02702at 2858.601 kb on + strand, within CCNA_02702at 2858.601 kb on + strand, within CCNA_02702at 2858.601 kb on + strand, within CCNA_02702at 2858.609 kb on - strand, within CCNA_02702at 2858.609 kb on - strand, within CCNA_02702at 2858.609 kb on - strand, within CCNA_02702at 2858.614 kb on - strand, within CCNA_02702at 2858.644 kb on + strandat 2858.648 kb on - strandat 2858.688 kb on - strandat 2858.688 kb on - strandat 2858.688 kb on - strandat 2858.697 kb on + strandat 2858.718 kb on - strandat 2858.726 kb on - strandat 2858.814 kb on + strand, within CCNA_02703at 2858.814 kb on + strand, within CCNA_02703at 2858.822 kb on - strand, within CCNA_02703at 2858.822 kb on - strand, within CCNA_02703at 2858.822 kb on - strand, within CCNA_02703at 2858.833 kb on - strand, within CCNA_02703at 2858.862 kb on + strand, within CCNA_02703at 2858.890 kb on + strandat 2858.898 kb on + strand, within CCNA_02703at 2858.906 kb on + strand, within CCNA_02703at 2858.951 kb on + strand, within CCNA_02703at 2858.953 kb on - strand, within CCNA_02703at 2858.999 kb on - strand, within CCNA_02703at 2859.015 kb on - strand, within CCNA_02703at 2859.080 kb on + strandat 2859.158 kb on + strandat 2859.163 kb on + strandat 2859.196 kb on - strandat 2859.342 kb on + strandat 2859.350 kb on - strandat 2859.428 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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2,856,336 + CCNA_02701 0.58 -1.5
2,856,336 + CCNA_02701 0.58 -1.0
2,856,336 + CCNA_02701 0.58 -1.7
2,856,425 - CCNA_02701 0.62 -2.4
2,856,523 - CCNA_02701 0.66 -1.4
2,856,542 - CCNA_02701 0.67 -1.7
2,856,599 + CCNA_02701 0.69 -1.3
2,856,627 - CCNA_02701 0.70 +0.4
2,856,635 - CCNA_02701 0.71 -0.3
2,856,637 + CCNA_02701 0.71 -0.1
2,856,637 + CCNA_02701 0.71 +0.0
2,856,642 + CCNA_02701 0.71 -2.6
2,856,642 + CCNA_02701 0.71 -0.9
2,856,645 - CCNA_02701 0.71 -2.0
2,856,689 - CCNA_02701 0.73 +1.0
2,856,704 + CCNA_02701 0.74 -2.2
2,856,704 + +3.5
2,856,712 - CCNA_02701 0.74 +0.0
2,856,751 - CCNA_02701 0.76 +2.5
2,856,756 + CCNA_02701 0.76 -0.5
2,856,766 + CCNA_02701 0.76 +0.7
2,856,814 - CCNA_02701 0.78 -1.9
2,856,872 - CCNA_02701 0.81 -3.1
2,856,884 + CCNA_02701 0.81 -2.0
2,856,921 - CCNA_02701 0.83 -2.9
2,856,989 + CCNA_02701 0.86 -1.4
2,856,989 + CCNA_02701 0.86 +0.9
2,856,989 + CCNA_02701 0.86 -0.9
2,856,997 - CCNA_02701 0.86 -2.4
2,856,997 - CCNA_02701 0.86 -1.3
2,856,997 - CCNA_02701 0.86 -3.6
2,857,096 - -2.0
2,857,189 - -1.8
2,857,194 + +0.0
2,857,219 - -2.2
2,857,245 + -0.3
2,857,253 - -2.9
2,857,258 - -1.9
2,857,264 - -1.1
2,857,282 - -2.5
2,857,287 + +1.1
2,857,344 + -2.0
2,857,346 + +0.9
2,857,372 + -0.3
2,857,380 - -0.6
2,857,382 + -0.8
2,857,404 - -0.9
2,857,446 - -1.6
2,857,489 + CCNA_02702 0.12 -1.9
2,857,489 + CCNA_02702 0.12 +1.5
2,857,489 + CCNA_02702 0.12 -1.3
2,857,489 + CCNA_02702 0.12 +0.7
2,857,497 - CCNA_02702 0.13 -0.7
2,857,497 - CCNA_02702 0.13 -2.1
2,857,497 - CCNA_02702 0.13 -2.7
2,857,497 - CCNA_02702 0.13 +0.3
2,857,497 - CCNA_02702 0.13 +1.1
2,857,497 - CCNA_02702 0.13 -1.2
2,857,503 + CCNA_02702 0.13 -1.5
2,857,503 + CCNA_02702 0.13 -1.0
2,857,511 - CCNA_02702 0.14 +1.1
2,857,562 - CCNA_02702 0.17 +0.9
2,857,595 - CCNA_02702 0.19 +0.1
2,857,619 - CCNA_02702 0.21 -2.8
2,857,624 + CCNA_02702 0.21 -0.9
2,857,637 - CCNA_02702 0.22 -2.5
2,857,637 - CCNA_02702 0.22 -1.9
2,857,650 - CCNA_02702 0.23 -1.7
2,857,650 - CCNA_02702 0.23 -1.2
2,857,650 - CCNA_02702 0.23 -2.4
2,857,652 + CCNA_02702 0.23 -1.2
2,857,668 - CCNA_02702 0.24 +0.9
2,857,768 + CCNA_02702 0.31 +0.3
2,857,846 + CCNA_02702 0.37 -0.5
2,857,846 + CCNA_02702 0.37 +0.0
2,857,895 + +1.5
2,857,900 + CCNA_02702 0.40 +0.5
2,857,926 - CCNA_02702 0.42 -3.0
2,857,928 + CCNA_02702 0.42 +1.5
2,857,936 - CCNA_02702 0.43 -1.3
2,857,936 - CCNA_02702 0.43 -1.7
2,857,936 - CCNA_02702 0.43 -1.4
2,857,948 - CCNA_02702 0.44 -1.7
2,857,974 - CCNA_02702 0.46 -1.2
2,857,976 + CCNA_02702 0.46 +0.7
2,857,976 + CCNA_02702 0.46 -0.9
2,857,997 - CCNA_02702 0.47 -1.6
2,858,003 - CCNA_02702 0.48 +0.7
2,858,006 - CCNA_02702 0.48 -0.1
2,858,016 - CCNA_02702 0.48 -0.8
2,858,043 + CCNA_02702 0.50 +0.0
2,858,081 + CCNA_02702 0.53 +1.1
2,858,089 - CCNA_02702 0.53 -1.3
2,858,089 - CCNA_02702 0.53 -2.9
2,858,089 - CCNA_02702 0.53 -0.8
2,858,119 + CCNA_02702 0.56 -0.3
2,858,119 + CCNA_02702 0.56 -2.7
2,858,148 - CCNA_02702 0.58 -2.7
2,858,219 - CCNA_02702 0.62 -1.8
2,858,220 - CCNA_02702 0.63 -1.3
2,858,230 - CCNA_02702 0.63 -1.4
2,858,274 - CCNA_02702 0.66 -0.9
2,858,289 - CCNA_02702 0.67 -1.2
2,858,290 + CCNA_02702 0.67 -2.1
2,858,311 - CCNA_02702 0.69 -1.2
2,858,342 - CCNA_02702 0.71 -1.8
2,858,370 + CCNA_02702 0.73 -0.2
2,858,385 + CCNA_02702 0.74 -0.8
2,858,393 - CCNA_02702 0.74 -1.9
2,858,393 - CCNA_02702 0.74 -0.4
2,858,454 + CCNA_02702 0.79 +0.3
2,858,454 + CCNA_02702 0.79 +1.5
2,858,462 - CCNA_02702 0.79 +0.3
2,858,474 - CCNA_02702 0.80 +2.5
2,858,474 - CCNA_02702 0.80 +1.9
2,858,485 - CCNA_02702 0.81 -0.1
2,858,485 - CCNA_02702 0.81 -0.3
2,858,490 - CCNA_02702 0.81 -0.9
2,858,547 - CCNA_02702 0.85 -2.1
2,858,549 - CCNA_02702 0.85 -3.1
2,858,564 - CCNA_02702 0.86 -1.9
2,858,601 + CCNA_02702 0.89 -1.5
2,858,601 + CCNA_02702 0.89 -1.5
2,858,601 + CCNA_02702 0.89 -1.5
2,858,601 + CCNA_02702 0.89 -1.2
2,858,609 - CCNA_02702 0.89 +0.5
2,858,609 - CCNA_02702 0.89 -1.6
2,858,609 - CCNA_02702 0.89 -0.8
2,858,614 - CCNA_02702 0.90 -1.3
2,858,644 + +0.0
2,858,648 - -1.1
2,858,688 - -1.3
2,858,688 - -0.7
2,858,688 - -1.8
2,858,697 + +1.9
2,858,718 - -1.2
2,858,726 - -1.7
2,858,814 + CCNA_02703 0.15 +0.0
2,858,814 + CCNA_02703 0.15 -0.9
2,858,822 - CCNA_02703 0.17 +0.7
2,858,822 - CCNA_02703 0.17 -0.8
2,858,822 - CCNA_02703 0.17 -0.9
2,858,833 - CCNA_02703 0.20 +1.5
2,858,862 + CCNA_02703 0.29 -1.4
2,858,890 + +0.9
2,858,898 + CCNA_02703 0.39 -0.8
2,858,906 + CCNA_02703 0.41 -0.2
2,858,951 + CCNA_02703 0.54 +0.7
2,858,953 - CCNA_02703 0.55 -0.2
2,858,999 - CCNA_02703 0.68 +0.9
2,859,015 - CCNA_02703 0.73 -0.4
2,859,080 + -0.3
2,859,158 + -1.2
2,859,163 + -1.3
2,859,196 - -0.5
2,859,342 + -0.9
2,859,350 - -1.2
2,859,428 + -2.1

Or see this region's nucleotide sequence