Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02691

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02690 and CCNA_02691 overlap by 4 nucleotidesCCNA_02691 and CCNA_02692 overlap by 4 nucleotidesCCNA_02692 and CCNA_02693 are separated by 127 nucleotides CCNA_02690: CCNA_02690 - cytochrome c domain membrane protein, at 2,843,370 to 2,844,557 _02690 CCNA_02691: CCNA_02691 - TetR-family transcriptional regulator, at 2,844,554 to 2,845,246 _02691 CCNA_02692: CCNA_02692 - YceI-like domain protein, at 2,845,243 to 2,845,935 _02692 CCNA_02693: CCNA_02693 - M10 peptidase-related protein, at 2,846,063 to 2,848,015 _02693 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2843.595 kb on - strand, within CCNA_02690at 2843.595 kb on - strand, within CCNA_02690at 2843.611 kb on + strand, within CCNA_02690at 2843.613 kb on - strand, within CCNA_02690at 2843.618 kb on + strand, within CCNA_02690at 2843.634 kb on - strand, within CCNA_02690at 2843.663 kb on + strand, within CCNA_02690at 2843.675 kb on + strand, within CCNA_02690at 2843.688 kb on - strand, within CCNA_02690at 2843.710 kb on + strand, within CCNA_02690at 2843.734 kb on + strand, within CCNA_02690at 2843.753 kb on - strand, within CCNA_02690at 2843.753 kb on - strand, within CCNA_02690at 2843.753 kb on - strand, within CCNA_02690at 2843.776 kb on - strand, within CCNA_02690at 2843.798 kb on + strand, within CCNA_02690at 2843.816 kb on + strand, within CCNA_02690at 2843.847 kb on + strand, within CCNA_02690at 2843.873 kb on + strand, within CCNA_02690at 2843.878 kb on - strand, within CCNA_02690at 2843.935 kb on - strand, within CCNA_02690at 2843.953 kb on + strand, within CCNA_02690at 2843.953 kb on + strand, within CCNA_02690at 2843.953 kb on + strand, within CCNA_02690at 2844.039 kb on + strand, within CCNA_02690at 2844.039 kb on + strand, within CCNA_02690at 2844.046 kb on + strand, within CCNA_02690at 2844.047 kb on - strand, within CCNA_02690at 2844.075 kb on + strand, within CCNA_02690at 2844.102 kb on + strand, within CCNA_02690at 2844.113 kb on + strand, within CCNA_02690at 2844.113 kb on + strand, within CCNA_02690at 2844.119 kb on + strand, within CCNA_02690at 2844.127 kb on - strand, within CCNA_02690at 2844.127 kb on - strand, within CCNA_02690at 2844.140 kb on + strand, within CCNA_02690at 2844.143 kb on - strand, within CCNA_02690at 2844.209 kb on + strand, within CCNA_02690at 2844.215 kb on + strandat 2844.228 kb on + strand, within CCNA_02690at 2844.279 kb on + strand, within CCNA_02690at 2844.297 kb on + strand, within CCNA_02690at 2844.320 kb on - strand, within CCNA_02690at 2844.320 kb on - strand, within CCNA_02690at 2844.325 kb on - strand, within CCNA_02690at 2844.374 kb on - strand, within CCNA_02690at 2844.384 kb on - strand, within CCNA_02690at 2844.394 kb on - strand, within CCNA_02690at 2844.399 kb on + strand, within CCNA_02690at 2844.409 kb on + strand, within CCNA_02690at 2844.417 kb on - strand, within CCNA_02690at 2844.417 kb on - strand, within CCNA_02690at 2844.417 kb on - strand, within CCNA_02690at 2844.468 kb on + strandat 2844.477 kb on - strandat 2844.499 kb on + strandat 2844.531 kb on + strandat 2844.538 kb on - strandat 2844.588 kb on - strandat 2844.588 kb on - strandat 2844.598 kb on - strandat 2844.622 kb on + strandat 2844.736 kb on + strand, within CCNA_02691at 2844.738 kb on - strand, within CCNA_02691at 2844.773 kb on + strand, within CCNA_02691at 2844.773 kb on + strand, within CCNA_02691at 2844.773 kb on + strand, within CCNA_02691at 2844.773 kb on + strand, within CCNA_02691at 2844.773 kb on + strand, within CCNA_02691at 2844.778 kb on + strand, within CCNA_02691at 2844.778 kb on + strand, within CCNA_02691at 2844.778 kb on + strand, within CCNA_02691at 2844.778 kb on + strand, within CCNA_02691at 2844.778 kb on + strand, within CCNA_02691at 2844.778 kb on + strand, within CCNA_02691at 2844.778 kb on + strand, within CCNA_02691at 2844.786 kb on - strand, within CCNA_02691at 2844.786 kb on - strand, within CCNA_02691at 2844.786 kb on - strand, within CCNA_02691at 2844.786 kb on - strand, within CCNA_02691at 2844.786 kb on - strand, within CCNA_02691at 2844.786 kb on - strand, within CCNA_02691at 2844.786 kb on - strand, within CCNA_02691at 2844.804 kb on + strand, within CCNA_02691at 2844.887 kb on + strand, within CCNA_02691at 2844.926 kb on + strand, within CCNA_02691at 2845.032 kb on - strand, within CCNA_02691at 2845.070 kb on - strand, within CCNA_02691at 2845.073 kb on + strand, within CCNA_02691at 2845.073 kb on + strand, within CCNA_02691at 2845.073 kb on + strand, within CCNA_02691at 2845.081 kb on - strand, within CCNA_02691at 2845.081 kb on - strand, within CCNA_02691at 2845.097 kb on + strand, within CCNA_02691at 2845.107 kb on + strand, within CCNA_02691at 2845.107 kb on + strand, within CCNA_02691at 2845.115 kb on - strand, within CCNA_02691at 2845.115 kb on - strand, within CCNA_02691at 2845.125 kb on + strand, within CCNA_02691at 2845.164 kb on + strand, within CCNA_02691at 2845.172 kb on - strand, within CCNA_02691at 2845.207 kb on + strandat 2845.282 kb on - strandat 2845.292 kb on + strandat 2845.352 kb on - strand, within CCNA_02692at 2845.381 kb on + strand, within CCNA_02692at 2845.452 kb on + strand, within CCNA_02692at 2845.460 kb on - strand, within CCNA_02692at 2845.460 kb on - strand, within CCNA_02692at 2845.483 kb on - strand, within CCNA_02692at 2845.485 kb on + strand, within CCNA_02692at 2845.485 kb on + strand, within CCNA_02692at 2845.485 kb on + strand, within CCNA_02692at 2845.485 kb on + strand, within CCNA_02692at 2845.485 kb on + strand, within CCNA_02692at 2845.493 kb on - strand, within CCNA_02692at 2845.493 kb on - strand, within CCNA_02692at 2845.504 kb on - strand, within CCNA_02692at 2845.542 kb on + strand, within CCNA_02692at 2845.542 kb on + strand, within CCNA_02692at 2845.571 kb on + strand, within CCNA_02692at 2845.573 kb on - strand, within CCNA_02692at 2845.582 kb on + strand, within CCNA_02692at 2845.629 kb on + strand, within CCNA_02692at 2845.643 kb on + strand, within CCNA_02692at 2845.676 kb on + strand, within CCNA_02692at 2845.684 kb on - strand, within CCNA_02692at 2845.684 kb on - strand, within CCNA_02692at 2845.684 kb on - strand, within CCNA_02692at 2845.691 kb on + strand, within CCNA_02692at 2845.732 kb on - strand, within CCNA_02692at 2845.754 kb on + strand, within CCNA_02692at 2845.754 kb on + strand, within CCNA_02692at 2845.754 kb on + strand, within CCNA_02692at 2845.762 kb on - strand, within CCNA_02692at 2845.778 kb on + strand, within CCNA_02692at 2845.778 kb on + strand, within CCNA_02692at 2845.778 kb on + strand, within CCNA_02692at 2845.786 kb on - strand, within CCNA_02692at 2845.786 kb on - strand, within CCNA_02692at 2845.786 kb on - strand, within CCNA_02692at 2845.786 kb on - strand, within CCNA_02692at 2845.814 kb on + strand, within CCNA_02692at 2845.814 kb on + strand, within CCNA_02692at 2845.946 kb on + strandat 2845.952 kb on + strandat 2845.952 kb on + strandat 2845.952 kb on + strandat 2845.952 kb on + strandat 2845.960 kb on - strandat 2845.960 kb on - strandat 2846.056 kb on + strandat 2846.131 kb on - strandat 2846.131 kb on - strandat 2846.155 kb on - strandat 2846.178 kb on - strandat 2846.180 kb on + strandat 2846.190 kb on - strandat 2846.193 kb on + strandat 2846.193 kb on + strandat 2846.201 kb on - strandat 2846.233 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
2,843,595 - CCNA_02690 0.19 +0.4
2,843,595 - CCNA_02690 0.19 +0.3
2,843,611 + CCNA_02690 0.20 +0.0
2,843,613 - CCNA_02690 0.20 +0.1
2,843,618 + CCNA_02690 0.21 +0.7
2,843,634 - CCNA_02690 0.22 +2.5
2,843,663 + CCNA_02690 0.25 -0.6
2,843,675 + CCNA_02690 0.26 -1.9
2,843,688 - CCNA_02690 0.27 +0.4
2,843,710 + CCNA_02690 0.29 +1.2
2,843,734 + CCNA_02690 0.31 -0.6
2,843,753 - CCNA_02690 0.32 -0.6
2,843,753 - CCNA_02690 0.32 -2.8
2,843,753 - CCNA_02690 0.32 -1.2
2,843,776 - CCNA_02690 0.34 -1.2
2,843,798 + CCNA_02690 0.36 +0.5
2,843,816 + CCNA_02690 0.38 -1.0
2,843,847 + CCNA_02690 0.40 -2.2
2,843,873 + CCNA_02690 0.42 -0.6
2,843,878 - CCNA_02690 0.43 +0.2
2,843,935 - CCNA_02690 0.48 -0.4
2,843,953 + CCNA_02690 0.49 -0.4
2,843,953 + CCNA_02690 0.49 -1.2
2,843,953 + CCNA_02690 0.49 -1.7
2,844,039 + CCNA_02690 0.56 +0.0
2,844,039 + CCNA_02690 0.56 -0.8
2,844,046 + CCNA_02690 0.57 -1.9
2,844,047 - CCNA_02690 0.57 -0.6
2,844,075 + CCNA_02690 0.59 -0.4
2,844,102 + CCNA_02690 0.62 -2.4
2,844,113 + CCNA_02690 0.63 -1.5
2,844,113 + CCNA_02690 0.63 +0.7
2,844,119 + CCNA_02690 0.63 -0.1
2,844,127 - CCNA_02690 0.64 -1.1
2,844,127 - CCNA_02690 0.64 -1.8
2,844,140 + CCNA_02690 0.65 -2.5
2,844,143 - CCNA_02690 0.65 -0.2
2,844,209 + CCNA_02690 0.71 -3.7
2,844,215 + +1.5
2,844,228 + CCNA_02690 0.72 -0.8
2,844,279 + CCNA_02690 0.77 -1.4
2,844,297 + CCNA_02690 0.78 -1.5
2,844,320 - CCNA_02690 0.80 +0.5
2,844,320 - CCNA_02690 0.80 -0.6
2,844,325 - CCNA_02690 0.80 -2.9
2,844,374 - CCNA_02690 0.85 -0.2
2,844,384 - CCNA_02690 0.85 +0.8
2,844,394 - CCNA_02690 0.86 -1.6
2,844,399 + CCNA_02690 0.87 +0.2
2,844,409 + CCNA_02690 0.87 -0.9
2,844,417 - CCNA_02690 0.88 -0.3
2,844,417 - CCNA_02690 0.88 +0.3
2,844,417 - CCNA_02690 0.88 -0.7
2,844,468 + -2.4
2,844,477 - -1.0
2,844,499 + -0.7
2,844,531 + +2.5
2,844,538 - -0.6
2,844,588 - +0.4
2,844,588 - +0.2
2,844,598 - -1.2
2,844,622 + +0.6
2,844,736 + CCNA_02691 0.26 +2.1
2,844,738 - CCNA_02691 0.27 -0.9
2,844,773 + CCNA_02691 0.32 +1.8
2,844,773 + CCNA_02691 0.32 +1.5
2,844,773 + CCNA_02691 0.32 +2.0
2,844,773 + CCNA_02691 0.32 +1.5
2,844,773 + CCNA_02691 0.32 +2.0
2,844,778 + CCNA_02691 0.32 +2.1
2,844,778 + CCNA_02691 0.32 +2.0
2,844,778 + CCNA_02691 0.32 +0.1
2,844,778 + CCNA_02691 0.32 +3.7
2,844,778 + CCNA_02691 0.32 +1.6
2,844,778 + CCNA_02691 0.32 +3.1
2,844,778 + CCNA_02691 0.32 +1.6
2,844,786 - CCNA_02691 0.33 +1.5
2,844,786 - CCNA_02691 0.33 -0.1
2,844,786 - CCNA_02691 0.33 +0.1
2,844,786 - CCNA_02691 0.33 +2.5
2,844,786 - CCNA_02691 0.33 +0.5
2,844,786 - CCNA_02691 0.33 +1.2
2,844,786 - CCNA_02691 0.33 +2.8
2,844,804 + CCNA_02691 0.36 -1.3
2,844,887 + CCNA_02691 0.48 +2.7
2,844,926 + CCNA_02691 0.54 +1.8
2,845,032 - CCNA_02691 0.69 -0.4
2,845,070 - CCNA_02691 0.74 +0.7
2,845,073 + CCNA_02691 0.75 +2.7
2,845,073 + CCNA_02691 0.75 +1.5
2,845,073 + CCNA_02691 0.75 +1.8
2,845,081 - CCNA_02691 0.76 +0.1
2,845,081 - CCNA_02691 0.76 -0.5
2,845,097 + CCNA_02691 0.78 +0.1
2,845,107 + CCNA_02691 0.80 +3.7
2,845,107 + CCNA_02691 0.80 +1.5
2,845,115 - CCNA_02691 0.81 -0.2
2,845,115 - CCNA_02691 0.81 +1.3
2,845,125 + CCNA_02691 0.82 +2.1
2,845,164 + CCNA_02691 0.88 +1.9
2,845,172 - CCNA_02691 0.89 +1.7
2,845,207 + +0.6
2,845,282 - -0.1
2,845,292 + +1.0
2,845,352 - CCNA_02692 0.16 -0.6
2,845,381 + CCNA_02692 0.20 +0.2
2,845,452 + CCNA_02692 0.30 +2.4
2,845,460 - CCNA_02692 0.31 +1.5
2,845,460 - CCNA_02692 0.31 +0.7
2,845,483 - CCNA_02692 0.35 -0.9
2,845,485 + CCNA_02692 0.35 +1.5
2,845,485 + CCNA_02692 0.35 +0.4
2,845,485 + CCNA_02692 0.35 -0.2
2,845,485 + CCNA_02692 0.35 -0.4
2,845,485 + CCNA_02692 0.35 +0.0
2,845,493 - CCNA_02692 0.36 +0.1
2,845,493 - CCNA_02692 0.36 -1.4
2,845,504 - CCNA_02692 0.38 +0.2
2,845,542 + CCNA_02692 0.43 -0.4
2,845,542 + CCNA_02692 0.43 -0.9
2,845,571 + CCNA_02692 0.47 -0.5
2,845,573 - CCNA_02692 0.48 -1.7
2,845,582 + CCNA_02692 0.49 +0.3
2,845,629 + CCNA_02692 0.56 -2.0
2,845,643 + CCNA_02692 0.58 +1.2
2,845,676 + CCNA_02692 0.62 +0.5
2,845,684 - CCNA_02692 0.64 -0.1
2,845,684 - CCNA_02692 0.64 +0.3
2,845,684 - CCNA_02692 0.64 +1.0
2,845,691 + CCNA_02692 0.65 +1.4
2,845,732 - CCNA_02692 0.71 +0.4
2,845,754 + CCNA_02692 0.74 +0.3
2,845,754 + CCNA_02692 0.74 +0.5
2,845,754 + CCNA_02692 0.74 -0.3
2,845,762 - CCNA_02692 0.75 +1.0
2,845,778 + CCNA_02692 0.77 +1.2
2,845,778 + CCNA_02692 0.77 -1.9
2,845,778 + CCNA_02692 0.77 -0.2
2,845,786 - CCNA_02692 0.78 +0.1
2,845,786 - CCNA_02692 0.78 -0.1
2,845,786 - CCNA_02692 0.78 +0.0
2,845,786 - CCNA_02692 0.78 -0.3
2,845,814 + CCNA_02692 0.82 -0.6
2,845,814 + CCNA_02692 0.82 +0.2
2,845,946 + -1.9
2,845,952 + +1.1
2,845,952 + -0.6
2,845,952 + +0.5
2,845,952 + -1.5
2,845,960 - -1.1
2,845,960 - +0.6
2,846,056 + +0.2
2,846,131 - -0.2
2,846,131 - -0.2
2,846,155 - +0.7
2,846,178 - +2.5
2,846,180 + +1.1
2,846,190 - -1.9
2,846,193 + +0.1
2,846,193 + +1.3
2,846,201 - +0.7
2,846,233 + -1.3

Or see this region's nucleotide sequence