Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02688

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02687 and CCNA_02688 are separated by 130 nucleotidesCCNA_02688 and CCNA_02689 are separated by 148 nucleotidesCCNA_02689 and CCNA_02690 overlap by 1 nucleotides CCNA_02687: CCNA_02687 - serine-pyruvate aminotransferase, at 2,840,372 to 2,841,652 _02687 CCNA_02688: CCNA_02688 - PuuE-related allantoinase, at 2,841,783 to 2,842,697 _02688 CCNA_02689: CCNA_02689 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 2,842,846 to 2,843,370 _02689 CCNA_02690: CCNA_02690 - cytochrome c domain membrane protein, at 2,843,370 to 2,844,557 _02690 Position (kb) 2841 2842 2843Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2840.863 kb on + strand, within CCNA_02687at 2840.930 kb on + strand, within CCNA_02687at 2840.935 kb on + strand, within CCNA_02687at 2840.943 kb on - strand, within CCNA_02687at 2840.966 kb on + strand, within CCNA_02687at 2841.025 kb on - strand, within CCNA_02687at 2841.141 kb on + strand, within CCNA_02687at 2841.225 kb on - strand, within CCNA_02687at 2841.225 kb on - strand, within CCNA_02687at 2841.241 kb on + strand, within CCNA_02687at 2841.318 kb on - strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.425 kb on + strand, within CCNA_02687at 2841.433 kb on - strand, within CCNA_02687at 2841.458 kb on + strand, within CCNA_02687at 2841.482 kb on + strand, within CCNA_02687at 2841.482 kb on + strand, within CCNA_02687at 2841.490 kb on - strand, within CCNA_02687at 2841.513 kb on - strand, within CCNA_02687at 2841.549 kb on + strandat 2841.589 kb on - strandat 2841.589 kb on - strandat 2841.594 kb on - strandat 2841.615 kb on + strandat 2841.643 kb on + strandat 2841.649 kb on - strandat 2841.651 kb on - strandat 2841.651 kb on - strandat 2841.660 kb on + strandat 2841.708 kb on + strandat 2841.710 kb on + strandat 2841.739 kb on - strandat 2841.786 kb on + strandat 2841.855 kb on - strandat 2841.858 kb on + strandat 2841.858 kb on + strandat 2841.866 kb on - strandat 2841.878 kb on - strand, within CCNA_02688at 2841.911 kb on - strand, within CCNA_02688at 2841.952 kb on + strand, within CCNA_02688at 2841.970 kb on - strand, within CCNA_02688at 2842.058 kb on - strand, within CCNA_02688at 2842.059 kb on - strand, within CCNA_02688at 2842.059 kb on - strand, within CCNA_02688at 2842.080 kb on - strand, within CCNA_02688at 2842.086 kb on - strand, within CCNA_02688at 2842.088 kb on + strand, within CCNA_02688at 2842.088 kb on + strand, within CCNA_02688at 2842.120 kb on - strand, within CCNA_02688at 2842.128 kb on + strand, within CCNA_02688at 2842.181 kb on + strand, within CCNA_02688at 2842.216 kb on - strand, within CCNA_02688at 2842.219 kb on + strand, within CCNA_02688at 2842.264 kb on + strand, within CCNA_02688at 2842.266 kb on + strand, within CCNA_02688at 2842.277 kb on + strand, within CCNA_02688at 2842.283 kb on + strand, within CCNA_02688at 2842.283 kb on + strand, within CCNA_02688at 2842.283 kb on + strand, within CCNA_02688at 2842.283 kb on + strand, within CCNA_02688at 2842.285 kb on - strand, within CCNA_02688at 2842.291 kb on - strand, within CCNA_02688at 2842.291 kb on - strand, within CCNA_02688at 2842.291 kb on - strand, within CCNA_02688at 2842.308 kb on + strand, within CCNA_02688at 2842.355 kb on + strand, within CCNA_02688at 2842.368 kb on + strand, within CCNA_02688at 2842.397 kb on + strand, within CCNA_02688at 2842.405 kb on + strand, within CCNA_02688at 2842.406 kb on - strand, within CCNA_02688at 2842.410 kb on - strand, within CCNA_02688at 2842.413 kb on - strand, within CCNA_02688at 2842.443 kb on + strand, within CCNA_02688at 2842.446 kb on - strand, within CCNA_02688at 2842.463 kb on + strand, within CCNA_02688at 2842.463 kb on + strand, within CCNA_02688at 2842.471 kb on - strand, within CCNA_02688at 2842.476 kb on - strand, within CCNA_02688at 2842.532 kb on - strand, within CCNA_02688at 2842.539 kb on + strand, within CCNA_02688at 2842.542 kb on - strand, within CCNA_02688at 2842.547 kb on - strand, within CCNA_02688at 2842.559 kb on + strand, within CCNA_02688at 2842.574 kb on + strand, within CCNA_02688at 2842.582 kb on - strand, within CCNA_02688at 2842.610 kb on - strandat 2842.625 kb on + strandat 2842.630 kb on - strandat 2842.630 kb on - strandat 2842.648 kb on - strandat 2842.655 kb on + strandat 2842.655 kb on + strandat 2842.655 kb on + strandat 2842.683 kb on - strandat 2842.753 kb on + strandat 2842.753 kb on + strandat 2842.761 kb on - strandat 2842.777 kb on + strandat 2842.777 kb on + strandat 2842.777 kb on + strandat 2842.777 kb on + strandat 2842.777 kb on + strandat 2842.785 kb on - strandat 2842.785 kb on - strandat 2842.790 kb on - strandat 2842.790 kb on - strandat 2842.790 kb on - strandat 2842.792 kb on + strandat 2842.797 kb on + strandat 2842.800 kb on - strandat 2842.800 kb on - strandat 2842.821 kb on + strandat 2842.870 kb on + strandat 2842.878 kb on + strandat 2842.878 kb on - strandat 2842.878 kb on - strandat 2842.879 kb on + strandat 2842.900 kb on + strand, within CCNA_02689at 2842.900 kb on + strand, within CCNA_02689at 2842.900 kb on + strand, within CCNA_02689at 2842.900 kb on + strand, within CCNA_02689at 2842.900 kb on + strand, within CCNA_02689at 2842.902 kb on - strand, within CCNA_02689at 2842.912 kb on + strand, within CCNA_02689at 2842.912 kb on + strand, within CCNA_02689at 2842.920 kb on - strand, within CCNA_02689at 2842.937 kb on + strand, within CCNA_02689at 2842.937 kb on + strand, within CCNA_02689at 2842.958 kb on + strand, within CCNA_02689at 2842.983 kb on + strand, within CCNA_02689at 2843.010 kb on - strand, within CCNA_02689at 2843.011 kb on + strand, within CCNA_02689at 2843.017 kb on - strand, within CCNA_02689at 2843.036 kb on - strand, within CCNA_02689at 2843.050 kb on - strand, within CCNA_02689at 2843.052 kb on + strand, within CCNA_02689at 2843.052 kb on + strand, within CCNA_02689at 2843.060 kb on - strand, within CCNA_02689at 2843.070 kb on - strand, within CCNA_02689at 2843.071 kb on - strand, within CCNA_02689at 2843.107 kb on + strand, within CCNA_02689at 2843.112 kb on + strand, within CCNA_02689at 2843.112 kb on + strand, within CCNA_02689at 2843.137 kb on + strand, within CCNA_02689at 2843.137 kb on + strand, within CCNA_02689at 2843.137 kb on + strand, within CCNA_02689at 2843.138 kb on + strandat 2843.142 kb on + strand, within CCNA_02689at 2843.145 kb on - strand, within CCNA_02689at 2843.145 kb on - strand, within CCNA_02689at 2843.145 kb on - strand, within CCNA_02689at 2843.148 kb on + strand, within CCNA_02689at 2843.148 kb on + strand, within CCNA_02689at 2843.150 kb on - strand, within CCNA_02689at 2843.153 kb on + strand, within CCNA_02689at 2843.218 kb on - strand, within CCNA_02689at 2843.248 kb on + strand, within CCNA_02689at 2843.270 kb on - strand, within CCNA_02689at 2843.310 kb on + strand, within CCNA_02689at 2843.310 kb on + strand, within CCNA_02689at 2843.310 kb on + strand, within CCNA_02689at 2843.312 kb on + strand, within CCNA_02689at 2843.317 kb on + strand, within CCNA_02689at 2843.318 kb on - strandat 2843.318 kb on - strandat 2843.318 kb on - strandat 2843.320 kb on - strandat 2843.341 kb on - strandat 2843.341 kb on - strandat 2843.398 kb on + strandat 2843.403 kb on + strandat 2843.411 kb on - strandat 2843.413 kb on + strandat 2843.444 kb on - strandat 2843.453 kb on + strandat 2843.462 kb on + strandat 2843.497 kb on + strand, within CCNA_02690at 2843.522 kb on + strand, within CCNA_02690at 2843.522 kb on + strand, within CCNA_02690at 2843.522 kb on + strand, within CCNA_02690at 2843.522 kb on + strand, within CCNA_02690at 2843.522 kb on + strand, within CCNA_02690at 2843.522 kb on + strand, within CCNA_02690at 2843.530 kb on - strand, within CCNA_02690at 2843.530 kb on - strand, within CCNA_02690at 2843.595 kb on - strand, within CCNA_02690at 2843.595 kb on - strand, within CCNA_02690at 2843.611 kb on + strand, within CCNA_02690at 2843.613 kb on - strand, within CCNA_02690at 2843.618 kb on + strand, within CCNA_02690at 2843.634 kb on - strand, within CCNA_02690at 2843.663 kb on + strand, within CCNA_02690at 2843.675 kb on + strand, within CCNA_02690at 2843.688 kb on - strand, within CCNA_02690

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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2,840,863 + CCNA_02687 0.38 -2.2
2,840,930 + CCNA_02687 0.44 -0.5
2,840,935 + CCNA_02687 0.44 -0.1
2,840,943 - CCNA_02687 0.45 +0.5
2,840,966 + CCNA_02687 0.46 -1.0
2,841,025 - CCNA_02687 0.51 +1.5
2,841,141 + CCNA_02687 0.60 +2.5
2,841,225 - CCNA_02687 0.67 -1.5
2,841,225 - CCNA_02687 0.67 +1.5
2,841,241 + CCNA_02687 0.68 -0.4
2,841,318 - CCNA_02687 0.74 +0.9
2,841,425 + CCNA_02687 0.82 -0.4
2,841,425 + CCNA_02687 0.82 -1.8
2,841,425 + CCNA_02687 0.82 -1.1
2,841,425 + CCNA_02687 0.82 -1.1
2,841,425 + CCNA_02687 0.82 +2.9
2,841,433 - CCNA_02687 0.83 -0.7
2,841,458 + CCNA_02687 0.85 -1.8
2,841,482 + CCNA_02687 0.87 -0.2
2,841,482 + CCNA_02687 0.87 -0.2
2,841,490 - CCNA_02687 0.87 +0.5
2,841,513 - CCNA_02687 0.89 -1.4
2,841,549 + -0.4
2,841,589 - -0.8
2,841,589 - -0.9
2,841,594 - -0.9
2,841,615 + +0.2
2,841,643 + +1.5
2,841,649 - +0.5
2,841,651 - -0.1
2,841,651 - -1.4
2,841,660 + -1.3
2,841,708 + -0.2
2,841,710 + -1.0
2,841,739 - +0.5
2,841,786 + +0.4
2,841,855 - +0.0
2,841,858 + -1.3
2,841,858 + -1.0
2,841,866 - +0.1
2,841,878 - CCNA_02688 0.10 -0.5
2,841,911 - CCNA_02688 0.14 -0.1
2,841,952 + CCNA_02688 0.18 -1.8
2,841,970 - CCNA_02688 0.20 -1.9
2,842,058 - CCNA_02688 0.30 -1.1
2,842,059 - CCNA_02688 0.30 -0.8
2,842,059 - CCNA_02688 0.30 -1.4
2,842,080 - CCNA_02688 0.32 +0.8
2,842,086 - CCNA_02688 0.33 -0.6
2,842,088 + CCNA_02688 0.33 +0.6
2,842,088 + CCNA_02688 0.33 -0.1
2,842,120 - CCNA_02688 0.37 -0.0
2,842,128 + CCNA_02688 0.38 -0.6
2,842,181 + CCNA_02688 0.43 -1.4
2,842,216 - CCNA_02688 0.47 +1.1
2,842,219 + CCNA_02688 0.48 -1.0
2,842,264 + CCNA_02688 0.53 -1.1
2,842,266 + CCNA_02688 0.53 -1.6
2,842,277 + CCNA_02688 0.54 -1.8
2,842,283 + CCNA_02688 0.55 +0.5
2,842,283 + CCNA_02688 0.55 -0.0
2,842,283 + CCNA_02688 0.55 -0.6
2,842,283 + CCNA_02688 0.55 -2.5
2,842,285 - CCNA_02688 0.55 -1.0
2,842,291 - CCNA_02688 0.56 -1.3
2,842,291 - CCNA_02688 0.56 -1.2
2,842,291 - CCNA_02688 0.56 -1.1
2,842,308 + CCNA_02688 0.57 -0.5
2,842,355 + CCNA_02688 0.63 -0.4
2,842,368 + CCNA_02688 0.64 -1.2
2,842,397 + CCNA_02688 0.67 +0.1
2,842,405 + CCNA_02688 0.68 -0.9
2,842,406 - CCNA_02688 0.68 +0.5
2,842,410 - CCNA_02688 0.69 -0.9
2,842,413 - CCNA_02688 0.69 +0.9
2,842,443 + CCNA_02688 0.72 -2.3
2,842,446 - CCNA_02688 0.72 -0.3
2,842,463 + CCNA_02688 0.74 -0.5
2,842,463 + CCNA_02688 0.74 -1.3
2,842,471 - CCNA_02688 0.75 -1.7
2,842,476 - CCNA_02688 0.76 -1.4
2,842,532 - CCNA_02688 0.82 +1.5
2,842,539 + CCNA_02688 0.83 -0.7
2,842,542 - CCNA_02688 0.83 -2.2
2,842,547 - CCNA_02688 0.83 -1.4
2,842,559 + CCNA_02688 0.85 -0.7
2,842,574 + CCNA_02688 0.86 -2.0
2,842,582 - CCNA_02688 0.87 -0.7
2,842,610 - -1.4
2,842,625 + -1.5
2,842,630 - +1.5
2,842,630 - -1.7
2,842,648 - +0.6
2,842,655 + -0.7
2,842,655 + -1.9
2,842,655 + -0.3
2,842,683 - -0.5
2,842,753 + +1.3
2,842,753 + +0.2
2,842,761 - -2.2
2,842,777 + -1.8
2,842,777 + +0.5
2,842,777 + -1.5
2,842,777 + -0.1
2,842,777 + +1.5
2,842,785 - +1.8
2,842,785 - +1.1
2,842,790 - -1.1
2,842,790 - +1.5
2,842,790 - +0.8
2,842,792 + -0.5
2,842,797 + +1.2
2,842,800 - -0.9
2,842,800 - -1.9
2,842,821 + +1.0
2,842,870 + -1.7
2,842,878 + +3.5
2,842,878 - -0.4
2,842,878 - -1.2
2,842,879 + -3.1
2,842,900 + CCNA_02689 0.10 -0.3
2,842,900 + CCNA_02689 0.10 -0.3
2,842,900 + CCNA_02689 0.10 +0.7
2,842,900 + CCNA_02689 0.10 -0.2
2,842,900 + CCNA_02689 0.10 +0.1
2,842,902 - CCNA_02689 0.11 -0.9
2,842,912 + CCNA_02689 0.13 +0.1
2,842,912 + CCNA_02689 0.13 -2.8
2,842,920 - CCNA_02689 0.14 +0.1
2,842,937 + CCNA_02689 0.17 -1.1
2,842,937 + CCNA_02689 0.17 +0.1
2,842,958 + CCNA_02689 0.21 +0.2
2,842,983 + CCNA_02689 0.26 -0.3
2,843,010 - CCNA_02689 0.31 -3.0
2,843,011 + CCNA_02689 0.31 +0.7
2,843,017 - CCNA_02689 0.33 -0.3
2,843,036 - CCNA_02689 0.36 +0.2
2,843,050 - CCNA_02689 0.39 -0.8
2,843,052 + CCNA_02689 0.39 +0.7
2,843,052 + CCNA_02689 0.39 -0.1
2,843,060 - CCNA_02689 0.41 -0.7
2,843,070 - CCNA_02689 0.43 -1.1
2,843,071 - CCNA_02689 0.43 -2.2
2,843,107 + CCNA_02689 0.50 -1.7
2,843,112 + CCNA_02689 0.51 +0.9
2,843,112 + CCNA_02689 0.51 +1.7
2,843,137 + CCNA_02689 0.55 +1.1
2,843,137 + CCNA_02689 0.55 +0.0
2,843,137 + CCNA_02689 0.55 -0.4
2,843,138 + +2.1
2,843,142 + CCNA_02689 0.56 +0.3
2,843,145 - CCNA_02689 0.57 -1.9
2,843,145 - CCNA_02689 0.57 -0.8
2,843,145 - CCNA_02689 0.57 +0.5
2,843,148 + CCNA_02689 0.58 -0.5
2,843,148 + CCNA_02689 0.58 -1.8
2,843,150 - CCNA_02689 0.58 -0.3
2,843,153 + CCNA_02689 0.58 +0.3
2,843,218 - CCNA_02689 0.71 -1.5
2,843,248 + CCNA_02689 0.77 -1.2
2,843,270 - CCNA_02689 0.81 -1.0
2,843,310 + CCNA_02689 0.88 -1.2
2,843,310 + CCNA_02689 0.88 -1.6
2,843,310 + CCNA_02689 0.88 -1.9
2,843,312 + CCNA_02689 0.89 -0.8
2,843,317 + CCNA_02689 0.90 -0.1
2,843,318 - -1.3
2,843,318 - -1.4
2,843,318 - -0.1
2,843,320 - -1.0
2,843,341 - -0.9
2,843,341 - -1.0
2,843,398 + -2.1
2,843,403 + -1.9
2,843,411 - +0.3
2,843,413 + -0.6
2,843,444 - -0.8
2,843,453 + -0.5
2,843,462 + -0.6
2,843,497 + CCNA_02690 0.11 +0.6
2,843,522 + CCNA_02690 0.13 -1.6
2,843,522 + CCNA_02690 0.13 -2.6
2,843,522 + CCNA_02690 0.13 +0.0
2,843,522 + CCNA_02690 0.13 -1.8
2,843,522 + CCNA_02690 0.13 -1.7
2,843,522 + CCNA_02690 0.13 -0.5
2,843,530 - CCNA_02690 0.13 -2.5
2,843,530 - CCNA_02690 0.13 +0.6
2,843,595 - CCNA_02690 0.19 +0.4
2,843,595 - CCNA_02690 0.19 +0.3
2,843,611 + CCNA_02690 0.20 +0.0
2,843,613 - CCNA_02690 0.20 +0.1
2,843,618 + CCNA_02690 0.21 +0.7
2,843,634 - CCNA_02690 0.22 +2.5
2,843,663 + CCNA_02690 0.25 -0.6
2,843,675 + CCNA_02690 0.26 -1.9
2,843,688 - CCNA_02690 0.27 +0.4

Or see this region's nucleotide sequence