Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02687 and CCNA_02688 are separated by 130 nucleotides CCNA_02688 and CCNA_02689 are separated by 148 nucleotides CCNA_02689 and CCNA_02690 overlap by 1 nucleotides
CCNA_02687: CCNA_02687 - serine-pyruvate aminotransferase, at 2,840,372 to 2,841,652
_02687
CCNA_02688: CCNA_02688 - PuuE-related allantoinase, at 2,841,783 to 2,842,697
_02688
CCNA_02689: CCNA_02689 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 2,842,846 to 2,843,370
_02689
CCNA_02690: CCNA_02690 - cytochrome c domain membrane protein, at 2,843,370 to 2,844,557
_02690
Position (kb)
2841
2842
2843 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2840.863 kb on + strand, within CCNA_02687 at 2840.930 kb on + strand, within CCNA_02687 at 2840.935 kb on + strand, within CCNA_02687 at 2840.943 kb on - strand, within CCNA_02687 at 2840.966 kb on + strand, within CCNA_02687 at 2841.025 kb on - strand, within CCNA_02687 at 2841.141 kb on + strand, within CCNA_02687 at 2841.225 kb on - strand, within CCNA_02687 at 2841.225 kb on - strand, within CCNA_02687 at 2841.241 kb on + strand, within CCNA_02687 at 2841.318 kb on - strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.425 kb on + strand, within CCNA_02687 at 2841.433 kb on - strand, within CCNA_02687 at 2841.458 kb on + strand, within CCNA_02687 at 2841.482 kb on + strand, within CCNA_02687 at 2841.482 kb on + strand, within CCNA_02687 at 2841.490 kb on - strand, within CCNA_02687 at 2841.513 kb on - strand, within CCNA_02687 at 2841.549 kb on + strand at 2841.589 kb on - strand at 2841.589 kb on - strand at 2841.594 kb on - strand at 2841.615 kb on + strand at 2841.643 kb on + strand at 2841.649 kb on - strand at 2841.651 kb on - strand at 2841.651 kb on - strand at 2841.660 kb on + strand at 2841.708 kb on + strand at 2841.710 kb on + strand at 2841.739 kb on - strand at 2841.786 kb on + strand at 2841.855 kb on - strand at 2841.858 kb on + strand at 2841.858 kb on + strand at 2841.866 kb on - strand at 2841.878 kb on - strand, within CCNA_02688 at 2841.911 kb on - strand, within CCNA_02688 at 2841.952 kb on + strand, within CCNA_02688 at 2841.970 kb on - strand, within CCNA_02688 at 2842.058 kb on - strand, within CCNA_02688 at 2842.059 kb on - strand, within CCNA_02688 at 2842.059 kb on - strand, within CCNA_02688 at 2842.080 kb on - strand, within CCNA_02688 at 2842.086 kb on - strand, within CCNA_02688 at 2842.088 kb on + strand, within CCNA_02688 at 2842.088 kb on + strand, within CCNA_02688 at 2842.120 kb on - strand, within CCNA_02688 at 2842.128 kb on + strand, within CCNA_02688 at 2842.181 kb on + strand, within CCNA_02688 at 2842.216 kb on - strand, within CCNA_02688 at 2842.219 kb on + strand, within CCNA_02688 at 2842.264 kb on + strand, within CCNA_02688 at 2842.266 kb on + strand, within CCNA_02688 at 2842.277 kb on + strand, within CCNA_02688 at 2842.283 kb on + strand, within CCNA_02688 at 2842.283 kb on + strand, within CCNA_02688 at 2842.283 kb on + strand, within CCNA_02688 at 2842.283 kb on + strand, within CCNA_02688 at 2842.285 kb on - strand, within CCNA_02688 at 2842.291 kb on - strand, within CCNA_02688 at 2842.291 kb on - strand, within CCNA_02688 at 2842.291 kb on - strand, within CCNA_02688 at 2842.308 kb on + strand, within CCNA_02688 at 2842.355 kb on + strand, within CCNA_02688 at 2842.368 kb on + strand, within CCNA_02688 at 2842.397 kb on + strand, within CCNA_02688 at 2842.405 kb on + strand, within CCNA_02688 at 2842.406 kb on - strand, within CCNA_02688 at 2842.410 kb on - strand, within CCNA_02688 at 2842.413 kb on - strand, within CCNA_02688 at 2842.443 kb on + strand, within CCNA_02688 at 2842.446 kb on - strand, within CCNA_02688 at 2842.463 kb on + strand, within CCNA_02688 at 2842.463 kb on + strand, within CCNA_02688 at 2842.471 kb on - strand, within CCNA_02688 at 2842.476 kb on - strand, within CCNA_02688 at 2842.532 kb on - strand, within CCNA_02688 at 2842.539 kb on + strand, within CCNA_02688 at 2842.542 kb on - strand, within CCNA_02688 at 2842.547 kb on - strand, within CCNA_02688 at 2842.559 kb on + strand, within CCNA_02688 at 2842.574 kb on + strand, within CCNA_02688 at 2842.582 kb on - strand, within CCNA_02688 at 2842.610 kb on - strand at 2842.625 kb on + strand at 2842.630 kb on - strand at 2842.630 kb on - strand at 2842.648 kb on - strand at 2842.655 kb on + strand at 2842.655 kb on + strand at 2842.655 kb on + strand at 2842.683 kb on - strand at 2842.753 kb on + strand at 2842.753 kb on + strand at 2842.761 kb on - strand at 2842.777 kb on + strand at 2842.777 kb on + strand at 2842.777 kb on + strand at 2842.777 kb on + strand at 2842.777 kb on + strand at 2842.785 kb on - strand at 2842.785 kb on - strand at 2842.790 kb on - strand at 2842.790 kb on - strand at 2842.790 kb on - strand at 2842.792 kb on + strand at 2842.797 kb on + strand at 2842.800 kb on - strand at 2842.800 kb on - strand at 2842.821 kb on + strand at 2842.870 kb on + strand at 2842.878 kb on + strand at 2842.878 kb on - strand at 2842.878 kb on - strand at 2842.879 kb on + strand at 2842.900 kb on + strand, within CCNA_02689 at 2842.900 kb on + strand, within CCNA_02689 at 2842.900 kb on + strand, within CCNA_02689 at 2842.900 kb on + strand, within CCNA_02689 at 2842.900 kb on + strand, within CCNA_02689 at 2842.902 kb on - strand, within CCNA_02689 at 2842.912 kb on + strand, within CCNA_02689 at 2842.912 kb on + strand, within CCNA_02689 at 2842.920 kb on - strand, within CCNA_02689 at 2842.937 kb on + strand, within CCNA_02689 at 2842.937 kb on + strand, within CCNA_02689 at 2842.958 kb on + strand, within CCNA_02689 at 2842.983 kb on + strand, within CCNA_02689 at 2843.010 kb on - strand, within CCNA_02689 at 2843.011 kb on + strand, within CCNA_02689 at 2843.017 kb on - strand, within CCNA_02689 at 2843.036 kb on - strand, within CCNA_02689 at 2843.050 kb on - strand, within CCNA_02689 at 2843.052 kb on + strand, within CCNA_02689 at 2843.052 kb on + strand, within CCNA_02689 at 2843.060 kb on - strand, within CCNA_02689 at 2843.070 kb on - strand, within CCNA_02689 at 2843.071 kb on - strand, within CCNA_02689 at 2843.107 kb on + strand, within CCNA_02689 at 2843.112 kb on + strand, within CCNA_02689 at 2843.112 kb on + strand, within CCNA_02689 at 2843.137 kb on + strand, within CCNA_02689 at 2843.137 kb on + strand, within CCNA_02689 at 2843.137 kb on + strand, within CCNA_02689 at 2843.138 kb on + strand at 2843.142 kb on + strand, within CCNA_02689 at 2843.145 kb on - strand, within CCNA_02689 at 2843.145 kb on - strand, within CCNA_02689 at 2843.145 kb on - strand, within CCNA_02689 at 2843.148 kb on + strand, within CCNA_02689 at 2843.148 kb on + strand, within CCNA_02689 at 2843.150 kb on - strand, within CCNA_02689 at 2843.153 kb on + strand, within CCNA_02689 at 2843.218 kb on - strand, within CCNA_02689 at 2843.248 kb on + strand, within CCNA_02689 at 2843.270 kb on - strand, within CCNA_02689 at 2843.310 kb on + strand, within CCNA_02689 at 2843.310 kb on + strand, within CCNA_02689 at 2843.310 kb on + strand, within CCNA_02689 at 2843.312 kb on + strand, within CCNA_02689 at 2843.317 kb on + strand, within CCNA_02689 at 2843.318 kb on - strand at 2843.318 kb on - strand at 2843.318 kb on - strand at 2843.320 kb on - strand at 2843.341 kb on - strand at 2843.341 kb on - strand at 2843.398 kb on + strand at 2843.403 kb on + strand at 2843.411 kb on - strand at 2843.413 kb on + strand at 2843.444 kb on - strand at 2843.453 kb on + strand at 2843.462 kb on + strand at 2843.497 kb on + strand, within CCNA_02690 at 2843.522 kb on + strand, within CCNA_02690 at 2843.522 kb on + strand, within CCNA_02690 at 2843.522 kb on + strand, within CCNA_02690 at 2843.522 kb on + strand, within CCNA_02690 at 2843.522 kb on + strand, within CCNA_02690 at 2843.522 kb on + strand, within CCNA_02690 at 2843.530 kb on - strand, within CCNA_02690 at 2843.530 kb on - strand, within CCNA_02690 at 2843.595 kb on - strand, within CCNA_02690 at 2843.595 kb on - strand, within CCNA_02690 at 2843.611 kb on + strand, within CCNA_02690 at 2843.613 kb on - strand, within CCNA_02690 at 2843.618 kb on + strand, within CCNA_02690 at 2843.634 kb on - strand, within CCNA_02690 at 2843.663 kb on + strand, within CCNA_02690 at 2843.675 kb on + strand, within CCNA_02690 at 2843.688 kb on - strand, within CCNA_02690
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 2,840,863 + CCNA_02687 0.38 -2.2 2,840,930 + CCNA_02687 0.44 -0.5 2,840,935 + CCNA_02687 0.44 -0.1 2,840,943 - CCNA_02687 0.45 +0.5 2,840,966 + CCNA_02687 0.46 -1.0 2,841,025 - CCNA_02687 0.51 +1.5 2,841,141 + CCNA_02687 0.60 +2.5 2,841,225 - CCNA_02687 0.67 -1.5 2,841,225 - CCNA_02687 0.67 +1.5 2,841,241 + CCNA_02687 0.68 -0.4 2,841,318 - CCNA_02687 0.74 +0.9 2,841,425 + CCNA_02687 0.82 -0.4 2,841,425 + CCNA_02687 0.82 -1.8 2,841,425 + CCNA_02687 0.82 -1.1 2,841,425 + CCNA_02687 0.82 -1.1 2,841,425 + CCNA_02687 0.82 +2.9 2,841,433 - CCNA_02687 0.83 -0.7 2,841,458 + CCNA_02687 0.85 -1.8 2,841,482 + CCNA_02687 0.87 -0.2 2,841,482 + CCNA_02687 0.87 -0.2 2,841,490 - CCNA_02687 0.87 +0.5 2,841,513 - CCNA_02687 0.89 -1.4 2,841,549 + -0.4 2,841,589 - -0.8 2,841,589 - -0.9 2,841,594 - -0.9 2,841,615 + +0.2 2,841,643 + +1.5 2,841,649 - +0.5 2,841,651 - -0.1 2,841,651 - -1.4 2,841,660 + -1.3 2,841,708 + -0.2 2,841,710 + -1.0 2,841,739 - +0.5 2,841,786 + +0.4 2,841,855 - +0.0 2,841,858 + -1.3 2,841,858 + -1.0 2,841,866 - +0.1 2,841,878 - CCNA_02688 0.10 -0.5 2,841,911 - CCNA_02688 0.14 -0.1 2,841,952 + CCNA_02688 0.18 -1.8 2,841,970 - CCNA_02688 0.20 -1.9 2,842,058 - CCNA_02688 0.30 -1.1 2,842,059 - CCNA_02688 0.30 -0.8 2,842,059 - CCNA_02688 0.30 -1.4 2,842,080 - CCNA_02688 0.32 +0.8 2,842,086 - CCNA_02688 0.33 -0.6 2,842,088 + CCNA_02688 0.33 +0.6 2,842,088 + CCNA_02688 0.33 -0.1 2,842,120 - CCNA_02688 0.37 -0.0 2,842,128 + CCNA_02688 0.38 -0.6 2,842,181 + CCNA_02688 0.43 -1.4 2,842,216 - CCNA_02688 0.47 +1.1 2,842,219 + CCNA_02688 0.48 -1.0 2,842,264 + CCNA_02688 0.53 -1.1 2,842,266 + CCNA_02688 0.53 -1.6 2,842,277 + CCNA_02688 0.54 -1.8 2,842,283 + CCNA_02688 0.55 +0.5 2,842,283 + CCNA_02688 0.55 -0.0 2,842,283 + CCNA_02688 0.55 -0.6 2,842,283 + CCNA_02688 0.55 -2.5 2,842,285 - CCNA_02688 0.55 -1.0 2,842,291 - CCNA_02688 0.56 -1.3 2,842,291 - CCNA_02688 0.56 -1.2 2,842,291 - CCNA_02688 0.56 -1.1 2,842,308 + CCNA_02688 0.57 -0.5 2,842,355 + CCNA_02688 0.63 -0.4 2,842,368 + CCNA_02688 0.64 -1.2 2,842,397 + CCNA_02688 0.67 +0.1 2,842,405 + CCNA_02688 0.68 -0.9 2,842,406 - CCNA_02688 0.68 +0.5 2,842,410 - CCNA_02688 0.69 -0.9 2,842,413 - CCNA_02688 0.69 +0.9 2,842,443 + CCNA_02688 0.72 -2.3 2,842,446 - CCNA_02688 0.72 -0.3 2,842,463 + CCNA_02688 0.74 -0.5 2,842,463 + CCNA_02688 0.74 -1.3 2,842,471 - CCNA_02688 0.75 -1.7 2,842,476 - CCNA_02688 0.76 -1.4 2,842,532 - CCNA_02688 0.82 +1.5 2,842,539 + CCNA_02688 0.83 -0.7 2,842,542 - CCNA_02688 0.83 -2.2 2,842,547 - CCNA_02688 0.83 -1.4 2,842,559 + CCNA_02688 0.85 -0.7 2,842,574 + CCNA_02688 0.86 -2.0 2,842,582 - CCNA_02688 0.87 -0.7 2,842,610 - -1.4 2,842,625 + -1.5 2,842,630 - +1.5 2,842,630 - -1.7 2,842,648 - +0.6 2,842,655 + -0.7 2,842,655 + -1.9 2,842,655 + -0.3 2,842,683 - -0.5 2,842,753 + +1.3 2,842,753 + +0.2 2,842,761 - -2.2 2,842,777 + -1.8 2,842,777 + +0.5 2,842,777 + -1.5 2,842,777 + -0.1 2,842,777 + +1.5 2,842,785 - +1.8 2,842,785 - +1.1 2,842,790 - -1.1 2,842,790 - +1.5 2,842,790 - +0.8 2,842,792 + -0.5 2,842,797 + +1.2 2,842,800 - -0.9 2,842,800 - -1.9 2,842,821 + +1.0 2,842,870 + -1.7 2,842,878 + +3.5 2,842,878 - -0.4 2,842,878 - -1.2 2,842,879 + -3.1 2,842,900 + CCNA_02689 0.10 -0.3 2,842,900 + CCNA_02689 0.10 -0.3 2,842,900 + CCNA_02689 0.10 +0.7 2,842,900 + CCNA_02689 0.10 -0.2 2,842,900 + CCNA_02689 0.10 +0.1 2,842,902 - CCNA_02689 0.11 -0.9 2,842,912 + CCNA_02689 0.13 +0.1 2,842,912 + CCNA_02689 0.13 -2.8 2,842,920 - CCNA_02689 0.14 +0.1 2,842,937 + CCNA_02689 0.17 -1.1 2,842,937 + CCNA_02689 0.17 +0.1 2,842,958 + CCNA_02689 0.21 +0.2 2,842,983 + CCNA_02689 0.26 -0.3 2,843,010 - CCNA_02689 0.31 -3.0 2,843,011 + CCNA_02689 0.31 +0.7 2,843,017 - CCNA_02689 0.33 -0.3 2,843,036 - CCNA_02689 0.36 +0.2 2,843,050 - CCNA_02689 0.39 -0.8 2,843,052 + CCNA_02689 0.39 +0.7 2,843,052 + CCNA_02689 0.39 -0.1 2,843,060 - CCNA_02689 0.41 -0.7 2,843,070 - CCNA_02689 0.43 -1.1 2,843,071 - CCNA_02689 0.43 -2.2 2,843,107 + CCNA_02689 0.50 -1.7 2,843,112 + CCNA_02689 0.51 +0.9 2,843,112 + CCNA_02689 0.51 +1.7 2,843,137 + CCNA_02689 0.55 +1.1 2,843,137 + CCNA_02689 0.55 +0.0 2,843,137 + CCNA_02689 0.55 -0.4 2,843,138 + +2.1 2,843,142 + CCNA_02689 0.56 +0.3 2,843,145 - CCNA_02689 0.57 -1.9 2,843,145 - CCNA_02689 0.57 -0.8 2,843,145 - CCNA_02689 0.57 +0.5 2,843,148 + CCNA_02689 0.58 -0.5 2,843,148 + CCNA_02689 0.58 -1.8 2,843,150 - CCNA_02689 0.58 -0.3 2,843,153 + CCNA_02689 0.58 +0.3 2,843,218 - CCNA_02689 0.71 -1.5 2,843,248 + CCNA_02689 0.77 -1.2 2,843,270 - CCNA_02689 0.81 -1.0 2,843,310 + CCNA_02689 0.88 -1.2 2,843,310 + CCNA_02689 0.88 -1.6 2,843,310 + CCNA_02689 0.88 -1.9 2,843,312 + CCNA_02689 0.89 -0.8 2,843,317 + CCNA_02689 0.90 -0.1 2,843,318 - -1.3 2,843,318 - -1.4 2,843,318 - -0.1 2,843,320 - -1.0 2,843,341 - -0.9 2,843,341 - -1.0 2,843,398 + -2.1 2,843,403 + -1.9 2,843,411 - +0.3 2,843,413 + -0.6 2,843,444 - -0.8 2,843,453 + -0.5 2,843,462 + -0.6 2,843,497 + CCNA_02690 0.11 +0.6 2,843,522 + CCNA_02690 0.13 -1.6 2,843,522 + CCNA_02690 0.13 -2.6 2,843,522 + CCNA_02690 0.13 +0.0 2,843,522 + CCNA_02690 0.13 -1.8 2,843,522 + CCNA_02690 0.13 -1.7 2,843,522 + CCNA_02690 0.13 -0.5 2,843,530 - CCNA_02690 0.13 -2.5 2,843,530 - CCNA_02690 0.13 +0.6 2,843,595 - CCNA_02690 0.19 +0.4 2,843,595 - CCNA_02690 0.19 +0.3 2,843,611 + CCNA_02690 0.20 +0.0 2,843,613 - CCNA_02690 0.20 +0.1 2,843,618 + CCNA_02690 0.21 +0.7 2,843,634 - CCNA_02690 0.22 +2.5 2,843,663 + CCNA_02690 0.25 -0.6 2,843,675 + CCNA_02690 0.26 -1.9 2,843,688 - CCNA_02690 0.27 +0.4
Or see this region's nucleotide sequence