Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02514 and CCNA_02515 are separated by 42 nucleotides CCNA_02515 and CCNA_02516 are separated by 172 nucleotides CCNA_02516 and CCNA_02517 are separated by 197 nucleotides CCNA_02517 and CCNA_02518 are separated by 67 nucleotides
CCNA_02514: CCNA_02514 - polysaccharide secretin protein hfsD, at 2,664,933 to 2,665,673
_02514
CCNA_02515: CCNA_02515 - TPR repeat/SEL1 family protein, at 2,665,716 to 2,665,994
_02515
CCNA_02516: CCNA_02516 - glutathione S-transferase, at 2,666,167 to 2,666,892
_02516
CCNA_02517: CCNA_02517 - hypothetical protein, at 2,667,090 to 2,667,611
_02517
CCNA_02518: CCNA_02518 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 2,667,679 to 2,669,175
_02518
Position (kb)
2666
2667 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2665.250 kb on - strand, within CCNA_02514 at 2665.263 kb on + strand, within CCNA_02514 at 2665.270 kb on - strand, within CCNA_02514 at 2665.293 kb on - strand, within CCNA_02514 at 2665.298 kb on + strand, within CCNA_02514 at 2665.320 kb on + strand, within CCNA_02514 at 2665.321 kb on + strand, within CCNA_02514 at 2665.330 kb on - strand, within CCNA_02514 at 2665.399 kb on + strand, within CCNA_02514 at 2665.399 kb on + strand, within CCNA_02514 at 2665.403 kb on + strand, within CCNA_02514 at 2665.418 kb on + strand, within CCNA_02514 at 2665.466 kb on - strand, within CCNA_02514 at 2665.509 kb on + strand, within CCNA_02514 at 2665.514 kb on + strand, within CCNA_02514 at 2665.514 kb on + strand, within CCNA_02514 at 2665.562 kb on + strand, within CCNA_02514 at 2665.715 kb on - strand at 2665.719 kb on + strand at 2665.727 kb on - strand at 2665.746 kb on + strand, within CCNA_02515 at 2665.774 kb on + strand, within CCNA_02515 at 2665.782 kb on - strand, within CCNA_02515 at 2665.786 kb on - strand, within CCNA_02515 at 2665.798 kb on + strand, within CCNA_02515 at 2665.806 kb on - strand, within CCNA_02515 at 2665.812 kb on - strand, within CCNA_02515 at 2665.813 kb on - strand, within CCNA_02515 at 2665.824 kb on + strand, within CCNA_02515 at 2665.837 kb on + strand, within CCNA_02515 at 2665.845 kb on - strand, within CCNA_02515 at 2665.861 kb on + strand, within CCNA_02515 at 2665.866 kb on + strand, within CCNA_02515 at 2665.866 kb on + strand, within CCNA_02515 at 2665.874 kb on - strand, within CCNA_02515 at 2665.874 kb on - strand, within CCNA_02515 at 2665.881 kb on + strand, within CCNA_02515 at 2665.881 kb on + strand, within CCNA_02515 at 2665.889 kb on - strand, within CCNA_02515 at 2665.889 kb on - strand, within CCNA_02515 at 2665.894 kb on + strand, within CCNA_02515 at 2665.899 kb on + strand, within CCNA_02515 at 2665.899 kb on + strand, within CCNA_02515 at 2665.899 kb on - strand, within CCNA_02515 at 2665.899 kb on - strand, within CCNA_02515 at 2665.904 kb on + strand, within CCNA_02515 at 2665.991 kb on - strand at 2665.997 kb on - strand at 2665.997 kb on - strand at 2666.040 kb on + strand at 2666.158 kb on - strand at 2666.193 kb on - strand at 2666.203 kb on - strand at 2666.224 kb on + strand at 2666.232 kb on - strand at 2666.259 kb on + strand, within CCNA_02516 at 2666.267 kb on - strand, within CCNA_02516 at 2666.267 kb on - strand, within CCNA_02516 at 2666.267 kb on - strand, within CCNA_02516 at 2666.277 kb on - strand, within CCNA_02516 at 2666.303 kb on + strand, within CCNA_02516 at 2666.303 kb on + strand, within CCNA_02516 at 2666.309 kb on + strand, within CCNA_02516 at 2666.311 kb on - strand, within CCNA_02516 at 2666.317 kb on - strand, within CCNA_02516 at 2666.317 kb on - strand, within CCNA_02516 at 2666.349 kb on - strand, within CCNA_02516 at 2666.363 kb on + strand, within CCNA_02516 at 2666.419 kb on + strand, within CCNA_02516 at 2666.419 kb on + strand, within CCNA_02516 at 2666.421 kb on + strand, within CCNA_02516 at 2666.425 kb on - strand, within CCNA_02516 at 2666.429 kb on - strand, within CCNA_02516 at 2666.429 kb on - strand, within CCNA_02516 at 2666.442 kb on - strand, within CCNA_02516 at 2666.458 kb on + strand, within CCNA_02516 at 2666.463 kb on + strand, within CCNA_02516 at 2666.481 kb on + strand, within CCNA_02516 at 2666.519 kb on + strand, within CCNA_02516 at 2666.558 kb on + strand, within CCNA_02516 at 2666.558 kb on + strand, within CCNA_02516 at 2666.590 kb on - strand, within CCNA_02516 at 2666.600 kb on - strand, within CCNA_02516 at 2666.600 kb on - strand, within CCNA_02516 at 2666.600 kb on - strand, within CCNA_02516 at 2666.632 kb on - strand, within CCNA_02516 at 2666.632 kb on - strand, within CCNA_02516 at 2666.632 kb on - strand, within CCNA_02516 at 2666.632 kb on - strand, within CCNA_02516 at 2666.637 kb on - strand, within CCNA_02516 at 2666.656 kb on + strand, within CCNA_02516 at 2666.758 kb on - strand, within CCNA_02516 at 2666.762 kb on + strand, within CCNA_02516 at 2666.762 kb on + strand, within CCNA_02516 at 2666.762 kb on + strand, within CCNA_02516 at 2666.770 kb on - strand, within CCNA_02516 at 2666.770 kb on - strand, within CCNA_02516 at 2666.770 kb on - strand, within CCNA_02516 at 2666.791 kb on - strand, within CCNA_02516 at 2666.804 kb on - strand, within CCNA_02516 at 2666.809 kb on + strand, within CCNA_02516 at 2666.812 kb on - strand, within CCNA_02516 at 2666.822 kb on - strand at 2666.869 kb on - strand at 2666.896 kb on - strand at 2666.981 kb on + strand at 2666.989 kb on - strand at 2666.995 kb on + strand at 2667.005 kb on - strand at 2667.005 kb on - strand at 2667.018 kb on - strand at 2667.023 kb on + strand at 2667.023 kb on + strand at 2667.052 kb on + strand at 2667.060 kb on + strand at 2667.060 kb on + strand at 2667.060 kb on - strand at 2667.068 kb on - strand at 2667.071 kb on + strand at 2667.144 kb on + strand, within CCNA_02517 at 2667.168 kb on + strand, within CCNA_02517 at 2667.168 kb on + strand, within CCNA_02517 at 2667.168 kb on + strand, within CCNA_02517 at 2667.168 kb on + strand, within CCNA_02517 at 2667.176 kb on - strand, within CCNA_02517 at 2667.176 kb on - strand, within CCNA_02517 at 2667.176 kb on - strand, within CCNA_02517 at 2667.176 kb on - strand, within CCNA_02517 at 2667.176 kb on - strand, within CCNA_02517 at 2667.176 kb on - strand, within CCNA_02517 at 2667.216 kb on + strand, within CCNA_02517 at 2667.285 kb on + strand, within CCNA_02517 at 2667.312 kb on - strand, within CCNA_02517 at 2667.321 kb on - strand, within CCNA_02517 at 2667.354 kb on + strand, within CCNA_02517 at 2667.368 kb on + strand, within CCNA_02517 at 2667.450 kb on - strand, within CCNA_02517 at 2667.460 kb on - strand, within CCNA_02517 at 2667.501 kb on - strand, within CCNA_02517 at 2667.579 kb on + strand at 2667.587 kb on - strand at 2667.594 kb on - strand at 2667.650 kb on - strand at 2667.659 kb on + strand at 2667.660 kb on - strand at 2667.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 2,665,250 - CCNA_02514 0.43 +2.0 2,665,263 + CCNA_02514 0.45 +1.0 2,665,270 - CCNA_02514 0.45 +0.0 2,665,293 - CCNA_02514 0.49 +0.3 2,665,298 + CCNA_02514 0.49 +0.3 2,665,320 + CCNA_02514 0.52 +1.3 2,665,321 + CCNA_02514 0.52 +1.5 2,665,330 - CCNA_02514 0.54 -1.0 2,665,399 + CCNA_02514 0.63 -0.4 2,665,399 + CCNA_02514 0.63 -0.5 2,665,403 + CCNA_02514 0.63 -0.3 2,665,418 + CCNA_02514 0.65 +0.0 2,665,466 - CCNA_02514 0.72 -1.0 2,665,509 + CCNA_02514 0.78 +0.6 2,665,514 + CCNA_02514 0.78 +0.6 2,665,514 + CCNA_02514 0.78 -1.0 2,665,562 + CCNA_02514 0.85 -1.3 2,665,715 - +0.3 2,665,719 + +1.9 2,665,727 - -1.0 2,665,746 + CCNA_02515 0.11 -1.8 2,665,774 + CCNA_02515 0.21 -0.7 2,665,782 - CCNA_02515 0.24 +0.0 2,665,786 - CCNA_02515 0.25 +1.5 2,665,798 + CCNA_02515 0.29 -1.2 2,665,806 - CCNA_02515 0.32 -1.2 2,665,812 - CCNA_02515 0.34 +0.5 2,665,813 - CCNA_02515 0.35 -1.2 2,665,824 + CCNA_02515 0.39 -2.1 2,665,837 + CCNA_02515 0.43 -0.1 2,665,845 - CCNA_02515 0.46 -2.8 2,665,861 + CCNA_02515 0.52 +0.4 2,665,866 + CCNA_02515 0.54 +0.2 2,665,866 + CCNA_02515 0.54 -0.5 2,665,874 - CCNA_02515 0.57 +1.8 2,665,874 - CCNA_02515 0.57 +0.4 2,665,881 + CCNA_02515 0.59 +0.8 2,665,881 + CCNA_02515 0.59 -2.5 2,665,889 - CCNA_02515 0.62 +0.6 2,665,889 - CCNA_02515 0.62 -0.8 2,665,894 + CCNA_02515 0.64 -0.8 2,665,899 + CCNA_02515 0.66 -1.4 2,665,899 + CCNA_02515 0.66 -0.3 2,665,899 - CCNA_02515 0.66 -3.6 2,665,899 - CCNA_02515 0.66 -0.7 2,665,904 + CCNA_02515 0.67 -0.3 2,665,991 - +0.1 2,665,997 - +1.0 2,665,997 - +0.4 2,666,040 + -1.8 2,666,158 - -0.8 2,666,193 - +1.2 2,666,203 - -0.2 2,666,224 + -0.5 2,666,232 - -0.3 2,666,259 + CCNA_02516 0.13 -0.3 2,666,267 - CCNA_02516 0.14 -0.6 2,666,267 - CCNA_02516 0.14 +0.9 2,666,267 - CCNA_02516 0.14 +0.7 2,666,277 - CCNA_02516 0.15 +0.8 2,666,303 + CCNA_02516 0.19 -1.5 2,666,303 + CCNA_02516 0.19 -1.7 2,666,309 + CCNA_02516 0.20 +0.3 2,666,311 - CCNA_02516 0.20 +0.3 2,666,317 - CCNA_02516 0.21 -1.4 2,666,317 - CCNA_02516 0.21 -1.3 2,666,349 - CCNA_02516 0.25 -0.2 2,666,363 + CCNA_02516 0.27 -2.0 2,666,419 + CCNA_02516 0.35 +0.2 2,666,419 + CCNA_02516 0.35 +0.0 2,666,421 + CCNA_02516 0.35 -1.3 2,666,425 - CCNA_02516 0.36 -1.9 2,666,429 - CCNA_02516 0.36 +2.0 2,666,429 - CCNA_02516 0.36 -1.6 2,666,442 - CCNA_02516 0.38 -1.1 2,666,458 + CCNA_02516 0.40 -1.6 2,666,463 + CCNA_02516 0.41 +2.9 2,666,481 + CCNA_02516 0.43 +0.0 2,666,519 + CCNA_02516 0.48 -0.2 2,666,558 + CCNA_02516 0.54 +0.0 2,666,558 + CCNA_02516 0.54 -0.1 2,666,590 - CCNA_02516 0.58 -0.8 2,666,600 - CCNA_02516 0.60 -0.3 2,666,600 - CCNA_02516 0.60 -0.3 2,666,600 - CCNA_02516 0.60 -1.2 2,666,632 - CCNA_02516 0.64 -0.8 2,666,632 - CCNA_02516 0.64 +0.0 2,666,632 - CCNA_02516 0.64 +0.8 2,666,632 - CCNA_02516 0.64 +0.1 2,666,637 - CCNA_02516 0.65 -2.2 2,666,656 + CCNA_02516 0.67 +1.6 2,666,758 - CCNA_02516 0.81 +1.8 2,666,762 + CCNA_02516 0.82 -1.7 2,666,762 + CCNA_02516 0.82 -1.7 2,666,762 + CCNA_02516 0.82 +0.3 2,666,770 - CCNA_02516 0.83 +0.4 2,666,770 - CCNA_02516 0.83 +0.3 2,666,770 - CCNA_02516 0.83 -0.3 2,666,791 - CCNA_02516 0.86 +0.6 2,666,804 - CCNA_02516 0.88 +1.0 2,666,809 + CCNA_02516 0.88 -0.6 2,666,812 - CCNA_02516 0.89 -1.2 2,666,822 - +2.4 2,666,869 - -0.7 2,666,896 - -0.6 2,666,981 + -1.3 2,666,989 - +0.4 2,666,995 + -0.8 2,667,005 - -1.1 2,667,005 - -0.5 2,667,018 - -0.4 2,667,023 + +2.4 2,667,023 + -0.3 2,667,052 + +0.6 2,667,060 + -1.1 2,667,060 + -1.4 2,667,060 - +0.0 2,667,068 - -1.9 2,667,071 + +0.1 2,667,144 + CCNA_02517 0.10 -1.9 2,667,168 + CCNA_02517 0.15 -0.9 2,667,168 + CCNA_02517 0.15 +0.6 2,667,168 + CCNA_02517 0.15 -1.6 2,667,168 + CCNA_02517 0.15 -0.1 2,667,176 - CCNA_02517 0.16 -0.9 2,667,176 - CCNA_02517 0.16 -1.8 2,667,176 - CCNA_02517 0.16 -1.1 2,667,176 - CCNA_02517 0.16 +0.7 2,667,176 - CCNA_02517 0.16 -0.6 2,667,176 - CCNA_02517 0.16 +1.9 2,667,216 + CCNA_02517 0.24 +0.6 2,667,285 + CCNA_02517 0.37 -1.3 2,667,312 - CCNA_02517 0.43 -2.3 2,667,321 - CCNA_02517 0.44 -0.1 2,667,354 + CCNA_02517 0.51 -0.2 2,667,368 + CCNA_02517 0.53 +0.9 2,667,450 - CCNA_02517 0.69 -0.2 2,667,460 - CCNA_02517 0.71 -0.3 2,667,501 - CCNA_02517 0.79 +0.4 2,667,579 + -1.6 2,667,587 - -1.3 2,667,594 - +1.2 2,667,650 - +1.0 2,667,659 + +1.4 2,667,660 - -0.0 2,667,664 + +0.7
Or see this region's nucleotide sequence