Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02250 and CCNA_02251 are separated by 60 nucleotides CCNA_02251 and CCNA_02252 are separated by 21 nucleotides CCNA_02252 and CCNA_02253 are separated by 170 nucleotides
CCNA_02250: CCNA_02250 - methylcrotonyl-CoA carboxylase biotin-containing subunit, at 2,397,843 to 2,399,807
_02250
CCNA_02251: CCNA_02251 - methylglutaconyl-CoA hydratase, at 2,399,868 to 2,400,707
_02251
CCNA_02252: CCNA_02252 - methylcrotonyl-CoA carboxylase carboxyl transferase subunit, at 2,400,729 to 2,402,321
_02252
CCNA_02253: CCNA_02253 - hybrid CAP effector domain/patatin phospholipase protein, at 2,402,492 to 2,404,267
_02253
Position (kb)
2400
2401
2402
2403 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2399.797 kb on + strand at 2399.883 kb on - strand at 2399.883 kb on - strand at 2399.883 kb on - strand at 2399.883 kb on - strand at 2400.456 kb on - strand, within CCNA_02251 at 2400.523 kb on - strand, within CCNA_02251 at 2400.672 kb on - strand at 2400.711 kb on - strand at 2400.711 kb on - strand at 2400.846 kb on - strand at 2400.846 kb on - strand at 2400.933 kb on - strand, within CCNA_02252 at 2401.114 kb on - strand, within CCNA_02252 at 2401.124 kb on - strand, within CCNA_02252 at 2401.131 kb on - strand, within CCNA_02252 at 2401.175 kb on - strand, within CCNA_02252 at 2401.256 kb on - strand, within CCNA_02252 at 2401.391 kb on - strand, within CCNA_02252 at 2401.447 kb on + strand, within CCNA_02252 at 2401.600 kb on - strand, within CCNA_02252 at 2401.906 kb on - strand, within CCNA_02252 at 2402.213 kb on - strand at 2402.213 kb on - strand at 2402.336 kb on - strand at 2402.427 kb on + strand at 2402.452 kb on + strand at 2402.452 kb on + strand at 2402.475 kb on + strand at 2402.501 kb on + strand at 2402.519 kb on + strand at 2402.539 kb on - strand at 2402.546 kb on + strand at 2402.546 kb on + strand at 2402.554 kb on - strand at 2402.554 kb on - strand at 2402.568 kb on + strand at 2402.578 kb on + strand at 2402.591 kb on - strand at 2402.594 kb on - strand at 2402.596 kb on + strand at 2402.604 kb on - strand at 2402.729 kb on + strand, within CCNA_02253 at 2402.729 kb on + strand, within CCNA_02253 at 2402.737 kb on - strand, within CCNA_02253 at 2402.805 kb on - strand, within CCNA_02253 at 2402.844 kb on + strand, within CCNA_02253 at 2402.846 kb on + strand, within CCNA_02253 at 2402.884 kb on + strand, within CCNA_02253 at 2402.885 kb on + strand, within CCNA_02253 at 2402.885 kb on + strand, within CCNA_02253 at 2402.885 kb on + strand, within CCNA_02253 at 2402.885 kb on + strand, within CCNA_02253 at 2402.885 kb on + strand, within CCNA_02253 at 2402.892 kb on - strand, within CCNA_02253 at 2402.893 kb on - strand, within CCNA_02253 at 2402.893 kb on - strand, within CCNA_02253 at 2402.893 kb on - strand, within CCNA_02253 at 2402.893 kb on - strand, within CCNA_02253 at 2402.961 kb on - strand, within CCNA_02253 at 2402.993 kb on + strand, within CCNA_02253 at 2402.993 kb on + strand, within CCNA_02253 at 2403.001 kb on - strand, within CCNA_02253 at 2403.012 kb on + strand, within CCNA_02253 at 2403.012 kb on + strand, within CCNA_02253 at 2403.012 kb on + strand, within CCNA_02253 at 2403.012 kb on + strand, within CCNA_02253 at 2403.052 kb on + strand, within CCNA_02253 at 2403.078 kb on + strand, within CCNA_02253 at 2403.079 kb on - strand, within CCNA_02253 at 2403.083 kb on + strand, within CCNA_02253 at 2403.099 kb on + strand, within CCNA_02253 at 2403.222 kb on - strand, within CCNA_02253 at 2403.253 kb on - strand, within CCNA_02253 at 2403.260 kb on + strand, within CCNA_02253
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 2,399,797 + +0.8 2,399,883 - +0.0 2,399,883 - +0.9 2,399,883 - -0.3 2,399,883 - +0.8 2,400,456 - CCNA_02251 0.70 +0.7 2,400,523 - CCNA_02251 0.78 +2.7 2,400,672 - +1.3 2,400,711 - +0.7 2,400,711 - +1.7 2,400,846 - +1.3 2,400,846 - +0.5 2,400,933 - CCNA_02252 0.13 +1.5 2,401,114 - CCNA_02252 0.24 +2.3 2,401,124 - CCNA_02252 0.25 +3.0 2,401,131 - CCNA_02252 0.25 +2.8 2,401,175 - CCNA_02252 0.28 +2.6 2,401,256 - CCNA_02252 0.33 +1.7 2,401,391 - CCNA_02252 0.42 +1.9 2,401,447 + CCNA_02252 0.45 +1.0 2,401,600 - CCNA_02252 0.55 +2.9 2,401,906 - CCNA_02252 0.74 +3.8 2,402,213 - +1.7 2,402,213 - +2.2 2,402,336 - +1.0 2,402,427 + +0.4 2,402,452 + +0.9 2,402,452 + -2.4 2,402,475 + +0.4 2,402,501 + -1.3 2,402,519 + -1.4 2,402,539 - -0.6 2,402,546 + -0.9 2,402,546 + -0.2 2,402,554 - -0.0 2,402,554 - +0.6 2,402,568 + +0.8 2,402,578 + +0.1 2,402,591 - +0.6 2,402,594 - +1.0 2,402,596 + +0.4 2,402,604 - +1.7 2,402,729 + CCNA_02253 0.13 -0.3 2,402,729 + CCNA_02253 0.13 +1.0 2,402,737 - CCNA_02253 0.14 +0.5 2,402,805 - CCNA_02253 0.18 +0.3 2,402,844 + CCNA_02253 0.20 -1.0 2,402,846 + CCNA_02253 0.20 -0.1 2,402,884 + CCNA_02253 0.22 -0.1 2,402,885 + CCNA_02253 0.22 +1.1 2,402,885 + CCNA_02253 0.22 +1.3 2,402,885 + CCNA_02253 0.22 -0.2 2,402,885 + CCNA_02253 0.22 +2.6 2,402,885 + CCNA_02253 0.22 +1.0 2,402,892 - CCNA_02253 0.23 -0.3 2,402,893 - CCNA_02253 0.23 -1.7 2,402,893 - CCNA_02253 0.23 -2.4 2,402,893 - CCNA_02253 0.23 +0.5 2,402,893 - CCNA_02253 0.23 -2.1 2,402,961 - CCNA_02253 0.26 +2.2 2,402,993 + CCNA_02253 0.28 +0.0 2,402,993 + CCNA_02253 0.28 +0.7 2,403,001 - CCNA_02253 0.29 -1.1 2,403,012 + CCNA_02253 0.29 +0.5 2,403,012 + CCNA_02253 0.29 -2.4 2,403,012 + CCNA_02253 0.29 +1.6 2,403,012 + CCNA_02253 0.29 -2.2 2,403,052 + CCNA_02253 0.32 +0.1 2,403,078 + CCNA_02253 0.33 -1.7 2,403,079 - CCNA_02253 0.33 +0.5 2,403,083 + CCNA_02253 0.33 +1.9 2,403,099 + CCNA_02253 0.34 +1.1 2,403,222 - CCNA_02253 0.41 +1.3 2,403,253 - CCNA_02253 0.43 -0.0 2,403,260 + CCNA_02253 0.43 -1.0
Or see this region's nucleotide sequence