Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02210

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02209 and CCNA_02210 are separated by 101 nucleotidesCCNA_02210 and CCNA_02211 are separated by 91 nucleotides CCNA_02209: CCNA_02209 - quinone oxidoreductase, at 2,356,825 to 2,357,847 _02209 CCNA_02210: CCNA_02210 - dihydrofolate reductase, at 2,357,949 to 2,358,464 _02210 CCNA_02211: CCNA_02211 - zinc ribbon domain protein, at 2,358,556 to 2,359,698 _02211 Position (kb) 2357 2358 2359Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2356.956 kb on - strand, within CCNA_02209at 2356.978 kb on + strand, within CCNA_02209at 2356.987 kb on - strand, within CCNA_02209at 2356.996 kb on + strand, within CCNA_02209at 2357.004 kb on + strand, within CCNA_02209at 2357.011 kb on + strand, within CCNA_02209at 2357.019 kb on - strand, within CCNA_02209at 2357.025 kb on + strand, within CCNA_02209at 2357.036 kb on + strand, within CCNA_02209at 2357.036 kb on + strand, within CCNA_02209at 2357.036 kb on + strand, within CCNA_02209at 2357.044 kb on + strand, within CCNA_02209at 2357.044 kb on - strand, within CCNA_02209at 2357.044 kb on - strand, within CCNA_02209at 2357.063 kb on - strand, within CCNA_02209at 2357.171 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.291 kb on + strand, within CCNA_02209at 2357.297 kb on + strand, within CCNA_02209at 2357.303 kb on + strand, within CCNA_02209at 2357.305 kb on - strand, within CCNA_02209at 2357.320 kb on + strand, within CCNA_02209at 2357.328 kb on - strand, within CCNA_02209at 2357.462 kb on - strand, within CCNA_02209at 2357.478 kb on - strand, within CCNA_02209at 2357.485 kb on + strand, within CCNA_02209at 2357.491 kb on + strand, within CCNA_02209at 2357.492 kb on + strand, within CCNA_02209at 2357.493 kb on - strand, within CCNA_02209at 2357.540 kb on + strand, within CCNA_02209at 2357.571 kb on + strand, within CCNA_02209at 2357.598 kb on + strand, within CCNA_02209at 2357.606 kb on - strand, within CCNA_02209at 2357.606 kb on - strand, within CCNA_02209at 2357.628 kb on - strand, within CCNA_02209at 2357.706 kb on - strand, within CCNA_02209at 2357.786 kb on + strandat 2357.796 kb on + strandat 2357.804 kb on - strandat 2357.804 kb on - strandat 2357.804 kb on - strandat 2357.823 kb on - strandat 2357.828 kb on - strandat 2357.837 kb on + strandat 2357.837 kb on + strandat 2357.845 kb on - strandat 2357.918 kb on + strandat 2357.918 kb on + strandat 2357.918 kb on + strandat 2357.918 kb on + strandat 2357.923 kb on - strandat 2357.923 kb on - strandat 2357.938 kb on + strandat 2358.458 kb on + strandat 2358.497 kb on + strandat 2358.534 kb on + strandat 2358.664 kb on + strandat 2358.734 kb on + strand, within CCNA_02211at 2358.739 kb on - strand, within CCNA_02211at 2358.741 kb on - strand, within CCNA_02211at 2358.742 kb on - strand, within CCNA_02211at 2358.764 kb on + strand, within CCNA_02211at 2358.766 kb on + strand, within CCNA_02211at 2358.766 kb on + strand, within CCNA_02211at 2358.766 kb on + strand, within CCNA_02211at 2358.766 kb on + strand, within CCNA_02211at 2358.772 kb on - strand, within CCNA_02211at 2358.772 kb on - strand, within CCNA_02211at 2358.794 kb on - strand, within CCNA_02211at 2358.833 kb on + strand, within CCNA_02211at 2358.868 kb on + strand, within CCNA_02211at 2358.870 kb on - strand, within CCNA_02211at 2358.936 kb on + strand, within CCNA_02211at 2358.943 kb on + strand, within CCNA_02211at 2358.982 kb on + strand, within CCNA_02211at 2359.014 kb on - strand, within CCNA_02211at 2359.029 kb on + strand, within CCNA_02211at 2359.084 kb on + strand, within CCNA_02211at 2359.114 kb on - strand, within CCNA_02211at 2359.126 kb on + strand, within CCNA_02211at 2359.143 kb on + strand, within CCNA_02211at 2359.143 kb on + strand, within CCNA_02211at 2359.145 kb on - strand, within CCNA_02211at 2359.161 kb on + strand, within CCNA_02211at 2359.174 kb on + strand, within CCNA_02211at 2359.200 kb on + strand, within CCNA_02211at 2359.438 kb on + strand, within CCNA_02211

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
2,356,956 - CCNA_02209 0.13 -0.0
2,356,978 + CCNA_02209 0.15 -0.5
2,356,987 - CCNA_02209 0.16 -1.1
2,356,996 + CCNA_02209 0.17 -1.1
2,357,004 + CCNA_02209 0.17 +1.0
2,357,011 + CCNA_02209 0.18 +1.0
2,357,019 - CCNA_02209 0.19 -1.1
2,357,025 + CCNA_02209 0.20 +1.2
2,357,036 + CCNA_02209 0.21 -0.4
2,357,036 + CCNA_02209 0.21 +0.0
2,357,036 + CCNA_02209 0.21 -0.1
2,357,044 + CCNA_02209 0.21 -0.9
2,357,044 - CCNA_02209 0.21 +0.5
2,357,044 - CCNA_02209 0.21 +0.3
2,357,063 - CCNA_02209 0.23 -0.5
2,357,171 + CCNA_02209 0.34 +0.3
2,357,180 + CCNA_02209 0.35 +0.7
2,357,180 + CCNA_02209 0.35 +1.1
2,357,180 + CCNA_02209 0.35 -1.4
2,357,180 + CCNA_02209 0.35 -1.4
2,357,180 + CCNA_02209 0.35 +0.8
2,357,188 - CCNA_02209 0.35 -1.0
2,357,188 - CCNA_02209 0.35 +1.1
2,357,188 - CCNA_02209 0.35 +0.2
2,357,188 - CCNA_02209 0.35 -0.2
2,357,291 + CCNA_02209 0.46 +0.2
2,357,297 + CCNA_02209 0.46 +1.0
2,357,303 + CCNA_02209 0.47 +0.5
2,357,305 - CCNA_02209 0.47 +1.3
2,357,320 + CCNA_02209 0.48 -0.7
2,357,328 - CCNA_02209 0.49 -1.2
2,357,462 - CCNA_02209 0.62 -2.0
2,357,478 - CCNA_02209 0.64 -1.1
2,357,485 + CCNA_02209 0.65 +0.7
2,357,491 + CCNA_02209 0.65 -0.6
2,357,492 + CCNA_02209 0.65 +0.9
2,357,493 - CCNA_02209 0.65 +0.5
2,357,540 + CCNA_02209 0.70 -0.2
2,357,571 + CCNA_02209 0.73 -1.8
2,357,598 + CCNA_02209 0.76 +3.3
2,357,606 - CCNA_02209 0.76 -1.8
2,357,606 - CCNA_02209 0.76 -1.6
2,357,628 - CCNA_02209 0.78 +1.7
2,357,706 - CCNA_02209 0.86 +1.5
2,357,786 + -1.7
2,357,796 + -0.5
2,357,804 - +0.9
2,357,804 - -0.9
2,357,804 - -1.7
2,357,823 - -1.3
2,357,828 - -1.9
2,357,837 + -1.1
2,357,837 + -0.6
2,357,845 - +0.9
2,357,918 + +0.7
2,357,918 + +0.8
2,357,918 + +1.6
2,357,918 + +0.6
2,357,923 - -2.6
2,357,923 - -0.8
2,357,938 + -2.2
2,358,458 + -1.4
2,358,497 + -0.7
2,358,534 + -1.2
2,358,664 + +0.4
2,358,734 + CCNA_02211 0.16 +0.4
2,358,739 - CCNA_02211 0.16 +0.2
2,358,741 - CCNA_02211 0.16 +0.9
2,358,742 - CCNA_02211 0.16 -1.2
2,358,764 + CCNA_02211 0.18 +1.7
2,358,766 + CCNA_02211 0.18 +1.6
2,358,766 + CCNA_02211 0.18 -0.4
2,358,766 + CCNA_02211 0.18 +1.6
2,358,766 + CCNA_02211 0.18 -0.4
2,358,772 - CCNA_02211 0.19 -0.1
2,358,772 - CCNA_02211 0.19 -0.5
2,358,794 - CCNA_02211 0.21 +0.3
2,358,833 + CCNA_02211 0.24 -1.7
2,358,868 + CCNA_02211 0.27 -0.7
2,358,870 - CCNA_02211 0.27 +0.7
2,358,936 + CCNA_02211 0.33 +0.4
2,358,943 + CCNA_02211 0.34 -1.3
2,358,982 + CCNA_02211 0.37 +0.5
2,359,014 - CCNA_02211 0.40 -3.0
2,359,029 + CCNA_02211 0.41 -0.6
2,359,084 + CCNA_02211 0.46 +1.5
2,359,114 - CCNA_02211 0.49 -1.2
2,359,126 + CCNA_02211 0.50 +0.1
2,359,143 + CCNA_02211 0.51 +1.7
2,359,143 + CCNA_02211 0.51 +0.3
2,359,145 - CCNA_02211 0.52 +0.6
2,359,161 + CCNA_02211 0.53 +1.8
2,359,174 + CCNA_02211 0.54 +2.0
2,359,200 + CCNA_02211 0.56 +0.7
2,359,438 + CCNA_02211 0.77 +1.1

Or see this region's nucleotide sequence