Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02207 and CCNA_02208 are separated by 118 nucleotides CCNA_02208 and CCNA_02209 overlap by 4 nucleotides
CCNA_02207: CCNA_02207 - hypothetical protein, at 2,354,920 to 2,355,870
_02207
CCNA_02208: CCNA_02208 - thymidylate synthase, at 2,355,989 to 2,356,828
_02208
CCNA_02209: CCNA_02209 - quinone oxidoreductase, at 2,356,825 to 2,357,847
_02209
Position (kb)
2355
2356
2357 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2354.989 kb on + strand at 2354.996 kb on - strand at 2354.996 kb on - strand at 2354.997 kb on - strand at 2355.000 kb on + strand at 2355.000 kb on + strand at 2355.000 kb on + strand at 2355.008 kb on - strand at 2355.008 kb on - strand at 2355.018 kb on - strand, within CCNA_02207 at 2355.018 kb on - strand, within CCNA_02207 at 2355.025 kb on + strand, within CCNA_02207 at 2355.025 kb on + strand, within CCNA_02207 at 2355.033 kb on - strand, within CCNA_02207 at 2355.033 kb on - strand, within CCNA_02207 at 2355.059 kb on - strand, within CCNA_02207 at 2355.063 kb on + strand, within CCNA_02207 at 2355.064 kb on - strand, within CCNA_02207 at 2355.066 kb on - strand, within CCNA_02207 at 2355.139 kb on + strand, within CCNA_02207 at 2355.149 kb on - strand, within CCNA_02207 at 2355.154 kb on - strand, within CCNA_02207 at 2355.159 kb on + strand, within CCNA_02207 at 2355.170 kb on + strand, within CCNA_02207 at 2355.170 kb on + strand, within CCNA_02207 at 2355.176 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.196 kb on + strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.204 kb on - strand, within CCNA_02207 at 2355.217 kb on - strand, within CCNA_02207 at 2355.271 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.276 kb on + strand, within CCNA_02207 at 2355.279 kb on - strand, within CCNA_02207 at 2355.284 kb on - strand, within CCNA_02207 at 2355.284 kb on - strand, within CCNA_02207 at 2355.310 kb on + strand, within CCNA_02207 at 2355.310 kb on + strand, within CCNA_02207 at 2355.318 kb on - strand, within CCNA_02207 at 2355.318 kb on - strand, within CCNA_02207 at 2355.318 kb on - strand, within CCNA_02207 at 2355.318 kb on - strand, within CCNA_02207 at 2355.318 kb on - strand, within CCNA_02207 at 2355.318 kb on - strand, within CCNA_02207 at 2355.364 kb on + strand, within CCNA_02207 at 2355.393 kb on + strand, within CCNA_02207 at 2355.425 kb on - strand, within CCNA_02207 at 2355.428 kb on + strand, within CCNA_02207 at 2355.446 kb on - strand, within CCNA_02207 at 2355.468 kb on - strand, within CCNA_02207 at 2355.483 kb on + strand, within CCNA_02207 at 2355.485 kb on + strand, within CCNA_02207 at 2355.557 kb on + strand, within CCNA_02207 at 2355.584 kb on + strand, within CCNA_02207 at 2355.584 kb on + strand, within CCNA_02207 at 2355.603 kb on - strand, within CCNA_02207 at 2355.639 kb on + strand, within CCNA_02207 at 2355.647 kb on - strand, within CCNA_02207 at 2355.648 kb on - strand, within CCNA_02207 at 2355.673 kb on + strand, within CCNA_02207 at 2355.676 kb on + strand, within CCNA_02207 at 2355.722 kb on - strand, within CCNA_02207 at 2355.722 kb on - strand, within CCNA_02207 at 2355.736 kb on + strand, within CCNA_02207 at 2355.751 kb on + strand, within CCNA_02207 at 2355.776 kb on - strand at 2355.798 kb on + strand at 2355.800 kb on + strand at 2355.806 kb on - strand at 2355.808 kb on - strand at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.838 kb on + strand at 2355.840 kb on + strand at 2355.840 kb on + strand at 2355.846 kb on - strand at 2355.846 kb on - strand at 2355.846 kb on - strand at 2355.848 kb on - strand at 2355.873 kb on - strand at 2355.877 kb on + strand at 2355.887 kb on + strand at 2355.893 kb on - strand at 2355.925 kb on + strand at 2355.930 kb on + strand at 2355.933 kb on - strand at 2355.944 kb on + strand at 2355.952 kb on + strand at 2355.952 kb on + strand at 2355.952 kb on + strand at 2355.954 kb on + strand at 2355.962 kb on - strand at 2355.991 kb on + strand at 2356.012 kb on + strand at 2356.020 kb on - strand at 2356.830 kb on - strand at 2356.854 kb on + strand at 2356.857 kb on + strand at 2356.873 kb on + strand at 2356.874 kb on + strand at 2356.874 kb on + strand at 2356.948 kb on + strand, within CCNA_02209 at 2356.948 kb on + strand, within CCNA_02209 at 2356.956 kb on - strand, within CCNA_02209 at 2356.978 kb on + strand, within CCNA_02209 at 2356.987 kb on - strand, within CCNA_02209 at 2356.996 kb on + strand, within CCNA_02209 at 2357.004 kb on + strand, within CCNA_02209 at 2357.011 kb on + strand, within CCNA_02209 at 2357.019 kb on - strand, within CCNA_02209 at 2357.025 kb on + strand, within CCNA_02209 at 2357.036 kb on + strand, within CCNA_02209 at 2357.036 kb on + strand, within CCNA_02209 at 2357.036 kb on + strand, within CCNA_02209 at 2357.044 kb on + strand, within CCNA_02209 at 2357.044 kb on - strand, within CCNA_02209 at 2357.044 kb on - strand, within CCNA_02209 at 2357.063 kb on - strand, within CCNA_02209 at 2357.171 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.180 kb on + strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.188 kb on - strand, within CCNA_02209 at 2357.291 kb on + strand, within CCNA_02209 at 2357.297 kb on + strand, within CCNA_02209 at 2357.303 kb on + strand, within CCNA_02209 at 2357.305 kb on - strand, within CCNA_02209 at 2357.320 kb on + strand, within CCNA_02209 at 2357.328 kb on - strand, within CCNA_02209 at 2357.462 kb on - strand, within CCNA_02209 at 2357.478 kb on - strand, within CCNA_02209 at 2357.485 kb on + strand, within CCNA_02209 at 2357.491 kb on + strand, within CCNA_02209 at 2357.492 kb on + strand, within CCNA_02209 at 2357.493 kb on - strand, within CCNA_02209 at 2357.540 kb on + strand, within CCNA_02209 at 2357.571 kb on + strand, within CCNA_02209 at 2357.598 kb on + strand, within CCNA_02209 at 2357.606 kb on - strand, within CCNA_02209 at 2357.606 kb on - strand, within CCNA_02209 at 2357.628 kb on - strand, within CCNA_02209 at 2357.706 kb on - strand, within CCNA_02209 at 2357.786 kb on + strand at 2357.796 kb on + strand at 2357.804 kb on - strand at 2357.804 kb on - strand at 2357.804 kb on - strand at 2357.823 kb on - strand at 2357.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 2,354,989 + +0.3 2,354,996 - +0.6 2,354,996 - +1.7 2,354,997 - -1.1 2,355,000 + +1.2 2,355,000 + +2.3 2,355,000 + +0.8 2,355,008 - -1.4 2,355,008 - -0.4 2,355,018 - CCNA_02207 0.10 -0.4 2,355,018 - CCNA_02207 0.10 -1.0 2,355,025 + CCNA_02207 0.11 -0.3 2,355,025 + CCNA_02207 0.11 -0.4 2,355,033 - CCNA_02207 0.12 -2.0 2,355,033 - CCNA_02207 0.12 -0.2 2,355,059 - CCNA_02207 0.15 -2.0 2,355,063 + CCNA_02207 0.15 +0.9 2,355,064 - CCNA_02207 0.15 -0.7 2,355,066 - CCNA_02207 0.15 +0.1 2,355,139 + CCNA_02207 0.23 +1.0 2,355,149 - CCNA_02207 0.24 -1.3 2,355,154 - CCNA_02207 0.25 +0.2 2,355,159 + CCNA_02207 0.25 -0.3 2,355,170 + CCNA_02207 0.26 +1.1 2,355,170 + CCNA_02207 0.26 -0.6 2,355,176 + CCNA_02207 0.27 -0.2 2,355,196 + CCNA_02207 0.29 +0.7 2,355,196 + CCNA_02207 0.29 -0.2 2,355,196 + CCNA_02207 0.29 +0.2 2,355,196 + CCNA_02207 0.29 +0.9 2,355,196 + CCNA_02207 0.29 -0.3 2,355,196 + CCNA_02207 0.29 -0.2 2,355,196 + CCNA_02207 0.29 +0.9 2,355,196 + CCNA_02207 0.29 -0.2 2,355,196 + CCNA_02207 0.29 +0.5 2,355,196 + CCNA_02207 0.29 +0.0 2,355,196 + CCNA_02207 0.29 +1.5 2,355,196 + CCNA_02207 0.29 +0.9 2,355,196 + CCNA_02207 0.29 -0.4 2,355,196 + CCNA_02207 0.29 +1.2 2,355,196 + CCNA_02207 0.29 -1.9 2,355,196 + CCNA_02207 0.29 +1.6 2,355,196 + CCNA_02207 0.29 -0.9 2,355,196 + CCNA_02207 0.29 +1.4 2,355,196 + CCNA_02207 0.29 +0.2 2,355,196 + CCNA_02207 0.29 -0.1 2,355,196 + CCNA_02207 0.29 -0.1 2,355,196 + CCNA_02207 0.29 +0.4 2,355,196 + CCNA_02207 0.29 -1.3 2,355,196 + CCNA_02207 0.29 +0.5 2,355,196 + CCNA_02207 0.29 +0.7 2,355,196 + CCNA_02207 0.29 -0.2 2,355,204 - CCNA_02207 0.30 -1.5 2,355,204 - CCNA_02207 0.30 +1.3 2,355,204 - CCNA_02207 0.30 +2.6 2,355,204 - CCNA_02207 0.30 +0.6 2,355,204 - CCNA_02207 0.30 -1.5 2,355,204 - CCNA_02207 0.30 -0.8 2,355,204 - CCNA_02207 0.30 -1.6 2,355,204 - CCNA_02207 0.30 +1.3 2,355,204 - CCNA_02207 0.30 -1.1 2,355,204 - CCNA_02207 0.30 -1.4 2,355,204 - CCNA_02207 0.30 +1.7 2,355,204 - CCNA_02207 0.30 -2.5 2,355,204 - CCNA_02207 0.30 -0.1 2,355,204 - CCNA_02207 0.30 -0.2 2,355,204 - CCNA_02207 0.30 -0.2 2,355,204 - CCNA_02207 0.30 -0.8 2,355,204 - CCNA_02207 0.30 -2.4 2,355,204 - CCNA_02207 0.30 -1.7 2,355,204 - CCNA_02207 0.30 +1.3 2,355,204 - CCNA_02207 0.30 -1.5 2,355,217 - CCNA_02207 0.31 +1.3 2,355,271 + CCNA_02207 0.37 +0.1 2,355,276 + CCNA_02207 0.37 +0.1 2,355,276 + CCNA_02207 0.37 -0.4 2,355,276 + CCNA_02207 0.37 -0.7 2,355,276 + CCNA_02207 0.37 +0.4 2,355,279 - CCNA_02207 0.38 -0.1 2,355,284 - CCNA_02207 0.38 +1.5 2,355,284 - CCNA_02207 0.38 -0.9 2,355,310 + CCNA_02207 0.41 +0.4 2,355,310 + CCNA_02207 0.41 -0.3 2,355,318 - CCNA_02207 0.42 +0.6 2,355,318 - CCNA_02207 0.42 -0.0 2,355,318 - CCNA_02207 0.42 -0.2 2,355,318 - CCNA_02207 0.42 +1.5 2,355,318 - CCNA_02207 0.42 +0.5 2,355,318 - CCNA_02207 0.42 +1.4 2,355,364 + CCNA_02207 0.47 +0.9 2,355,393 + CCNA_02207 0.50 +0.6 2,355,425 - CCNA_02207 0.53 -0.5 2,355,428 + CCNA_02207 0.53 +0.3 2,355,446 - CCNA_02207 0.55 -0.4 2,355,468 - CCNA_02207 0.58 -2.1 2,355,483 + CCNA_02207 0.59 +0.0 2,355,485 + CCNA_02207 0.59 +0.6 2,355,557 + CCNA_02207 0.67 -0.5 2,355,584 + CCNA_02207 0.70 -0.8 2,355,584 + CCNA_02207 0.70 -0.2 2,355,603 - CCNA_02207 0.72 -1.6 2,355,639 + CCNA_02207 0.76 -0.3 2,355,647 - CCNA_02207 0.76 -0.5 2,355,648 - CCNA_02207 0.77 +0.4 2,355,673 + CCNA_02207 0.79 +0.1 2,355,676 + CCNA_02207 0.79 -0.7 2,355,722 - CCNA_02207 0.84 -0.4 2,355,722 - CCNA_02207 0.84 -1.3 2,355,736 + CCNA_02207 0.86 +2.5 2,355,751 + CCNA_02207 0.87 -0.7 2,355,776 - -1.6 2,355,798 + +1.2 2,355,800 + +0.1 2,355,806 - -1.9 2,355,808 - -0.1 2,355,838 + -0.1 2,355,838 + -0.1 2,355,838 + +1.4 2,355,838 + -0.3 2,355,840 + +0.6 2,355,840 + +1.3 2,355,846 - +0.7 2,355,846 - +1.2 2,355,846 - -1.4 2,355,848 - -1.4 2,355,873 - +0.3 2,355,877 + -0.2 2,355,887 + +0.1 2,355,893 - +0.1 2,355,925 + -0.1 2,355,930 + +1.5 2,355,933 - -1.3 2,355,944 + +0.1 2,355,952 + -0.3 2,355,952 + +0.8 2,355,952 + -0.7 2,355,954 + +0.4 2,355,962 - +0.1 2,355,991 + +0.6 2,356,012 + +0.7 2,356,020 - -0.1 2,356,830 - -0.3 2,356,854 + +0.4 2,356,857 + +1.4 2,356,873 + -0.5 2,356,874 + +0.7 2,356,874 + -0.4 2,356,948 + CCNA_02209 0.12 +1.3 2,356,948 + CCNA_02209 0.12 +0.1 2,356,956 - CCNA_02209 0.13 -0.0 2,356,978 + CCNA_02209 0.15 -0.5 2,356,987 - CCNA_02209 0.16 -1.1 2,356,996 + CCNA_02209 0.17 -1.1 2,357,004 + CCNA_02209 0.17 +1.0 2,357,011 + CCNA_02209 0.18 +1.0 2,357,019 - CCNA_02209 0.19 -1.1 2,357,025 + CCNA_02209 0.20 +1.2 2,357,036 + CCNA_02209 0.21 -0.4 2,357,036 + CCNA_02209 0.21 +0.0 2,357,036 + CCNA_02209 0.21 -0.1 2,357,044 + CCNA_02209 0.21 -0.9 2,357,044 - CCNA_02209 0.21 +0.5 2,357,044 - CCNA_02209 0.21 +0.3 2,357,063 - CCNA_02209 0.23 -0.5 2,357,171 + CCNA_02209 0.34 +0.3 2,357,180 + CCNA_02209 0.35 +0.7 2,357,180 + CCNA_02209 0.35 +1.1 2,357,180 + CCNA_02209 0.35 -1.4 2,357,180 + CCNA_02209 0.35 -1.4 2,357,180 + CCNA_02209 0.35 +0.8 2,357,188 - CCNA_02209 0.35 -1.0 2,357,188 - CCNA_02209 0.35 +1.1 2,357,188 - CCNA_02209 0.35 +0.2 2,357,188 - CCNA_02209 0.35 -0.2 2,357,291 + CCNA_02209 0.46 +0.2 2,357,297 + CCNA_02209 0.46 +1.0 2,357,303 + CCNA_02209 0.47 +0.5 2,357,305 - CCNA_02209 0.47 +1.3 2,357,320 + CCNA_02209 0.48 -0.7 2,357,328 - CCNA_02209 0.49 -1.2 2,357,462 - CCNA_02209 0.62 -2.0 2,357,478 - CCNA_02209 0.64 -1.1 2,357,485 + CCNA_02209 0.65 +0.7 2,357,491 + CCNA_02209 0.65 -0.6 2,357,492 + CCNA_02209 0.65 +0.9 2,357,493 - CCNA_02209 0.65 +0.5 2,357,540 + CCNA_02209 0.70 -0.2 2,357,571 + CCNA_02209 0.73 -1.8 2,357,598 + CCNA_02209 0.76 +3.3 2,357,606 - CCNA_02209 0.76 -1.8 2,357,606 - CCNA_02209 0.76 -1.6 2,357,628 - CCNA_02209 0.78 +1.7 2,357,706 - CCNA_02209 0.86 +1.5 2,357,786 + -1.7 2,357,796 + -0.5 2,357,804 - +0.9 2,357,804 - -0.9 2,357,804 - -1.7 2,357,823 - -1.3 2,357,828 - -1.9
Or see this region's nucleotide sequence