Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02208

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02207 and CCNA_02208 are separated by 118 nucleotidesCCNA_02208 and CCNA_02209 overlap by 4 nucleotides CCNA_02207: CCNA_02207 - hypothetical protein, at 2,354,920 to 2,355,870 _02207 CCNA_02208: CCNA_02208 - thymidylate synthase, at 2,355,989 to 2,356,828 _02208 CCNA_02209: CCNA_02209 - quinone oxidoreductase, at 2,356,825 to 2,357,847 _02209 Position (kb) 2355 2356 2357Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2354.989 kb on + strandat 2354.996 kb on - strandat 2354.996 kb on - strandat 2354.997 kb on - strandat 2355.000 kb on + strandat 2355.000 kb on + strandat 2355.000 kb on + strandat 2355.008 kb on - strandat 2355.008 kb on - strandat 2355.018 kb on - strand, within CCNA_02207at 2355.018 kb on - strand, within CCNA_02207at 2355.025 kb on + strand, within CCNA_02207at 2355.025 kb on + strand, within CCNA_02207at 2355.033 kb on - strand, within CCNA_02207at 2355.033 kb on - strand, within CCNA_02207at 2355.059 kb on - strand, within CCNA_02207at 2355.063 kb on + strand, within CCNA_02207at 2355.064 kb on - strand, within CCNA_02207at 2355.066 kb on - strand, within CCNA_02207at 2355.139 kb on + strand, within CCNA_02207at 2355.149 kb on - strand, within CCNA_02207at 2355.154 kb on - strand, within CCNA_02207at 2355.159 kb on + strand, within CCNA_02207at 2355.170 kb on + strand, within CCNA_02207at 2355.170 kb on + strand, within CCNA_02207at 2355.176 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.196 kb on + strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.204 kb on - strand, within CCNA_02207at 2355.217 kb on - strand, within CCNA_02207at 2355.271 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.276 kb on + strand, within CCNA_02207at 2355.279 kb on - strand, within CCNA_02207at 2355.284 kb on - strand, within CCNA_02207at 2355.284 kb on - strand, within CCNA_02207at 2355.310 kb on + strand, within CCNA_02207at 2355.310 kb on + strand, within CCNA_02207at 2355.318 kb on - strand, within CCNA_02207at 2355.318 kb on - strand, within CCNA_02207at 2355.318 kb on - strand, within CCNA_02207at 2355.318 kb on - strand, within CCNA_02207at 2355.318 kb on - strand, within CCNA_02207at 2355.318 kb on - strand, within CCNA_02207at 2355.364 kb on + strand, within CCNA_02207at 2355.393 kb on + strand, within CCNA_02207at 2355.425 kb on - strand, within CCNA_02207at 2355.428 kb on + strand, within CCNA_02207at 2355.446 kb on - strand, within CCNA_02207at 2355.468 kb on - strand, within CCNA_02207at 2355.483 kb on + strand, within CCNA_02207at 2355.485 kb on + strand, within CCNA_02207at 2355.557 kb on + strand, within CCNA_02207at 2355.584 kb on + strand, within CCNA_02207at 2355.584 kb on + strand, within CCNA_02207at 2355.603 kb on - strand, within CCNA_02207at 2355.639 kb on + strand, within CCNA_02207at 2355.647 kb on - strand, within CCNA_02207at 2355.648 kb on - strand, within CCNA_02207at 2355.673 kb on + strand, within CCNA_02207at 2355.676 kb on + strand, within CCNA_02207at 2355.722 kb on - strand, within CCNA_02207at 2355.722 kb on - strand, within CCNA_02207at 2355.736 kb on + strand, within CCNA_02207at 2355.751 kb on + strand, within CCNA_02207at 2355.776 kb on - strandat 2355.798 kb on + strandat 2355.800 kb on + strandat 2355.806 kb on - strandat 2355.808 kb on - strandat 2355.838 kb on + strandat 2355.838 kb on + strandat 2355.838 kb on + strandat 2355.838 kb on + strandat 2355.840 kb on + strandat 2355.840 kb on + strandat 2355.846 kb on - strandat 2355.846 kb on - strandat 2355.846 kb on - strandat 2355.848 kb on - strandat 2355.873 kb on - strandat 2355.877 kb on + strandat 2355.887 kb on + strandat 2355.893 kb on - strandat 2355.925 kb on + strandat 2355.930 kb on + strandat 2355.933 kb on - strandat 2355.944 kb on + strandat 2355.952 kb on + strandat 2355.952 kb on + strandat 2355.952 kb on + strandat 2355.954 kb on + strandat 2355.962 kb on - strandat 2355.991 kb on + strandat 2356.012 kb on + strandat 2356.020 kb on - strandat 2356.830 kb on - strandat 2356.854 kb on + strandat 2356.857 kb on + strandat 2356.873 kb on + strandat 2356.874 kb on + strandat 2356.874 kb on + strandat 2356.948 kb on + strand, within CCNA_02209at 2356.948 kb on + strand, within CCNA_02209at 2356.956 kb on - strand, within CCNA_02209at 2356.978 kb on + strand, within CCNA_02209at 2356.987 kb on - strand, within CCNA_02209at 2356.996 kb on + strand, within CCNA_02209at 2357.004 kb on + strand, within CCNA_02209at 2357.011 kb on + strand, within CCNA_02209at 2357.019 kb on - strand, within CCNA_02209at 2357.025 kb on + strand, within CCNA_02209at 2357.036 kb on + strand, within CCNA_02209at 2357.036 kb on + strand, within CCNA_02209at 2357.036 kb on + strand, within CCNA_02209at 2357.044 kb on + strand, within CCNA_02209at 2357.044 kb on - strand, within CCNA_02209at 2357.044 kb on - strand, within CCNA_02209at 2357.063 kb on - strand, within CCNA_02209at 2357.171 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.180 kb on + strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.188 kb on - strand, within CCNA_02209at 2357.291 kb on + strand, within CCNA_02209at 2357.297 kb on + strand, within CCNA_02209at 2357.303 kb on + strand, within CCNA_02209at 2357.305 kb on - strand, within CCNA_02209at 2357.320 kb on + strand, within CCNA_02209at 2357.328 kb on - strand, within CCNA_02209at 2357.462 kb on - strand, within CCNA_02209at 2357.478 kb on - strand, within CCNA_02209at 2357.485 kb on + strand, within CCNA_02209at 2357.491 kb on + strand, within CCNA_02209at 2357.492 kb on + strand, within CCNA_02209at 2357.493 kb on - strand, within CCNA_02209at 2357.540 kb on + strand, within CCNA_02209at 2357.571 kb on + strand, within CCNA_02209at 2357.598 kb on + strand, within CCNA_02209at 2357.606 kb on - strand, within CCNA_02209at 2357.606 kb on - strand, within CCNA_02209at 2357.628 kb on - strand, within CCNA_02209at 2357.706 kb on - strand, within CCNA_02209at 2357.786 kb on + strandat 2357.796 kb on + strandat 2357.804 kb on - strandat 2357.804 kb on - strandat 2357.804 kb on - strandat 2357.823 kb on - strandat 2357.828 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
2,354,989 + +0.3
2,354,996 - +0.6
2,354,996 - +1.7
2,354,997 - -1.1
2,355,000 + +1.2
2,355,000 + +2.3
2,355,000 + +0.8
2,355,008 - -1.4
2,355,008 - -0.4
2,355,018 - CCNA_02207 0.10 -0.4
2,355,018 - CCNA_02207 0.10 -1.0
2,355,025 + CCNA_02207 0.11 -0.3
2,355,025 + CCNA_02207 0.11 -0.4
2,355,033 - CCNA_02207 0.12 -2.0
2,355,033 - CCNA_02207 0.12 -0.2
2,355,059 - CCNA_02207 0.15 -2.0
2,355,063 + CCNA_02207 0.15 +0.9
2,355,064 - CCNA_02207 0.15 -0.7
2,355,066 - CCNA_02207 0.15 +0.1
2,355,139 + CCNA_02207 0.23 +1.0
2,355,149 - CCNA_02207 0.24 -1.3
2,355,154 - CCNA_02207 0.25 +0.2
2,355,159 + CCNA_02207 0.25 -0.3
2,355,170 + CCNA_02207 0.26 +1.1
2,355,170 + CCNA_02207 0.26 -0.6
2,355,176 + CCNA_02207 0.27 -0.2
2,355,196 + CCNA_02207 0.29 +0.7
2,355,196 + CCNA_02207 0.29 -0.2
2,355,196 + CCNA_02207 0.29 +0.2
2,355,196 + CCNA_02207 0.29 +0.9
2,355,196 + CCNA_02207 0.29 -0.3
2,355,196 + CCNA_02207 0.29 -0.2
2,355,196 + CCNA_02207 0.29 +0.9
2,355,196 + CCNA_02207 0.29 -0.2
2,355,196 + CCNA_02207 0.29 +0.5
2,355,196 + CCNA_02207 0.29 +0.0
2,355,196 + CCNA_02207 0.29 +1.5
2,355,196 + CCNA_02207 0.29 +0.9
2,355,196 + CCNA_02207 0.29 -0.4
2,355,196 + CCNA_02207 0.29 +1.2
2,355,196 + CCNA_02207 0.29 -1.9
2,355,196 + CCNA_02207 0.29 +1.6
2,355,196 + CCNA_02207 0.29 -0.9
2,355,196 + CCNA_02207 0.29 +1.4
2,355,196 + CCNA_02207 0.29 +0.2
2,355,196 + CCNA_02207 0.29 -0.1
2,355,196 + CCNA_02207 0.29 -0.1
2,355,196 + CCNA_02207 0.29 +0.4
2,355,196 + CCNA_02207 0.29 -1.3
2,355,196 + CCNA_02207 0.29 +0.5
2,355,196 + CCNA_02207 0.29 +0.7
2,355,196 + CCNA_02207 0.29 -0.2
2,355,204 - CCNA_02207 0.30 -1.5
2,355,204 - CCNA_02207 0.30 +1.3
2,355,204 - CCNA_02207 0.30 +2.6
2,355,204 - CCNA_02207 0.30 +0.6
2,355,204 - CCNA_02207 0.30 -1.5
2,355,204 - CCNA_02207 0.30 -0.8
2,355,204 - CCNA_02207 0.30 -1.6
2,355,204 - CCNA_02207 0.30 +1.3
2,355,204 - CCNA_02207 0.30 -1.1
2,355,204 - CCNA_02207 0.30 -1.4
2,355,204 - CCNA_02207 0.30 +1.7
2,355,204 - CCNA_02207 0.30 -2.5
2,355,204 - CCNA_02207 0.30 -0.1
2,355,204 - CCNA_02207 0.30 -0.2
2,355,204 - CCNA_02207 0.30 -0.2
2,355,204 - CCNA_02207 0.30 -0.8
2,355,204 - CCNA_02207 0.30 -2.4
2,355,204 - CCNA_02207 0.30 -1.7
2,355,204 - CCNA_02207 0.30 +1.3
2,355,204 - CCNA_02207 0.30 -1.5
2,355,217 - CCNA_02207 0.31 +1.3
2,355,271 + CCNA_02207 0.37 +0.1
2,355,276 + CCNA_02207 0.37 +0.1
2,355,276 + CCNA_02207 0.37 -0.4
2,355,276 + CCNA_02207 0.37 -0.7
2,355,276 + CCNA_02207 0.37 +0.4
2,355,279 - CCNA_02207 0.38 -0.1
2,355,284 - CCNA_02207 0.38 +1.5
2,355,284 - CCNA_02207 0.38 -0.9
2,355,310 + CCNA_02207 0.41 +0.4
2,355,310 + CCNA_02207 0.41 -0.3
2,355,318 - CCNA_02207 0.42 +0.6
2,355,318 - CCNA_02207 0.42 -0.0
2,355,318 - CCNA_02207 0.42 -0.2
2,355,318 - CCNA_02207 0.42 +1.5
2,355,318 - CCNA_02207 0.42 +0.5
2,355,318 - CCNA_02207 0.42 +1.4
2,355,364 + CCNA_02207 0.47 +0.9
2,355,393 + CCNA_02207 0.50 +0.6
2,355,425 - CCNA_02207 0.53 -0.5
2,355,428 + CCNA_02207 0.53 +0.3
2,355,446 - CCNA_02207 0.55 -0.4
2,355,468 - CCNA_02207 0.58 -2.1
2,355,483 + CCNA_02207 0.59 +0.0
2,355,485 + CCNA_02207 0.59 +0.6
2,355,557 + CCNA_02207 0.67 -0.5
2,355,584 + CCNA_02207 0.70 -0.8
2,355,584 + CCNA_02207 0.70 -0.2
2,355,603 - CCNA_02207 0.72 -1.6
2,355,639 + CCNA_02207 0.76 -0.3
2,355,647 - CCNA_02207 0.76 -0.5
2,355,648 - CCNA_02207 0.77 +0.4
2,355,673 + CCNA_02207 0.79 +0.1
2,355,676 + CCNA_02207 0.79 -0.7
2,355,722 - CCNA_02207 0.84 -0.4
2,355,722 - CCNA_02207 0.84 -1.3
2,355,736 + CCNA_02207 0.86 +2.5
2,355,751 + CCNA_02207 0.87 -0.7
2,355,776 - -1.6
2,355,798 + +1.2
2,355,800 + +0.1
2,355,806 - -1.9
2,355,808 - -0.1
2,355,838 + -0.1
2,355,838 + -0.1
2,355,838 + +1.4
2,355,838 + -0.3
2,355,840 + +0.6
2,355,840 + +1.3
2,355,846 - +0.7
2,355,846 - +1.2
2,355,846 - -1.4
2,355,848 - -1.4
2,355,873 - +0.3
2,355,877 + -0.2
2,355,887 + +0.1
2,355,893 - +0.1
2,355,925 + -0.1
2,355,930 + +1.5
2,355,933 - -1.3
2,355,944 + +0.1
2,355,952 + -0.3
2,355,952 + +0.8
2,355,952 + -0.7
2,355,954 + +0.4
2,355,962 - +0.1
2,355,991 + +0.6
2,356,012 + +0.7
2,356,020 - -0.1
2,356,830 - -0.3
2,356,854 + +0.4
2,356,857 + +1.4
2,356,873 + -0.5
2,356,874 + +0.7
2,356,874 + -0.4
2,356,948 + CCNA_02209 0.12 +1.3
2,356,948 + CCNA_02209 0.12 +0.1
2,356,956 - CCNA_02209 0.13 -0.0
2,356,978 + CCNA_02209 0.15 -0.5
2,356,987 - CCNA_02209 0.16 -1.1
2,356,996 + CCNA_02209 0.17 -1.1
2,357,004 + CCNA_02209 0.17 +1.0
2,357,011 + CCNA_02209 0.18 +1.0
2,357,019 - CCNA_02209 0.19 -1.1
2,357,025 + CCNA_02209 0.20 +1.2
2,357,036 + CCNA_02209 0.21 -0.4
2,357,036 + CCNA_02209 0.21 +0.0
2,357,036 + CCNA_02209 0.21 -0.1
2,357,044 + CCNA_02209 0.21 -0.9
2,357,044 - CCNA_02209 0.21 +0.5
2,357,044 - CCNA_02209 0.21 +0.3
2,357,063 - CCNA_02209 0.23 -0.5
2,357,171 + CCNA_02209 0.34 +0.3
2,357,180 + CCNA_02209 0.35 +0.7
2,357,180 + CCNA_02209 0.35 +1.1
2,357,180 + CCNA_02209 0.35 -1.4
2,357,180 + CCNA_02209 0.35 -1.4
2,357,180 + CCNA_02209 0.35 +0.8
2,357,188 - CCNA_02209 0.35 -1.0
2,357,188 - CCNA_02209 0.35 +1.1
2,357,188 - CCNA_02209 0.35 +0.2
2,357,188 - CCNA_02209 0.35 -0.2
2,357,291 + CCNA_02209 0.46 +0.2
2,357,297 + CCNA_02209 0.46 +1.0
2,357,303 + CCNA_02209 0.47 +0.5
2,357,305 - CCNA_02209 0.47 +1.3
2,357,320 + CCNA_02209 0.48 -0.7
2,357,328 - CCNA_02209 0.49 -1.2
2,357,462 - CCNA_02209 0.62 -2.0
2,357,478 - CCNA_02209 0.64 -1.1
2,357,485 + CCNA_02209 0.65 +0.7
2,357,491 + CCNA_02209 0.65 -0.6
2,357,492 + CCNA_02209 0.65 +0.9
2,357,493 - CCNA_02209 0.65 +0.5
2,357,540 + CCNA_02209 0.70 -0.2
2,357,571 + CCNA_02209 0.73 -1.8
2,357,598 + CCNA_02209 0.76 +3.3
2,357,606 - CCNA_02209 0.76 -1.8
2,357,606 - CCNA_02209 0.76 -1.6
2,357,628 - CCNA_02209 0.78 +1.7
2,357,706 - CCNA_02209 0.86 +1.5
2,357,786 + -1.7
2,357,796 + -0.5
2,357,804 - +0.9
2,357,804 - -0.9
2,357,804 - -1.7
2,357,823 - -1.3
2,357,828 - -1.9

Or see this region's nucleotide sequence