Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01659 and CCNA_01660 are separated by 110 nucleotides CCNA_01660 and CCNA_R0041 are separated by 127 nucleotides CCNA_R0041 and CCNA_01663 are separated by 537 nucleotides
CCNA_01659: CCNA_01659 - queuine tRNA-ribosyltransferase, at 1,779,993 to 1,781,108
_01659
CCNA_01660: CCNA_01660 - hypothetical protein, at 1,781,219 to 1,781,911
_01660
CCNA_R0041: CCNA_R0041 - tRNA-Lys, at 1,782,039 to 1,782,113
_R0041
CCNA_01663: CCNA_01663 - potassium-transporting ATPase A chain, at 1,782,651 to 1,784,363
_01663
Position (kb)
1781
1782 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1780.409 kb on - strand, within CCNA_01659 at 1780.476 kb on + strand, within CCNA_01659 at 1780.537 kb on + strand, within CCNA_01659 at 1780.680 kb on + strand, within CCNA_01659 at 1780.680 kb on + strand, within CCNA_01659 at 1780.680 kb on + strand, within CCNA_01659 at 1780.688 kb on - strand, within CCNA_01659 at 1780.757 kb on + strand, within CCNA_01659 at 1780.765 kb on - strand, within CCNA_01659 at 1780.824 kb on + strand, within CCNA_01659 at 1780.824 kb on + strand, within CCNA_01659 at 1780.829 kb on + strand, within CCNA_01659 at 1780.829 kb on + strand, within CCNA_01659 at 1780.830 kb on + strand, within CCNA_01659 at 1780.832 kb on - strand, within CCNA_01659 at 1780.835 kb on + strand, within CCNA_01659 at 1780.955 kb on + strand, within CCNA_01659 at 1780.955 kb on + strand, within CCNA_01659 at 1780.955 kb on + strand, within CCNA_01659 at 1781.194 kb on - strand at 1781.195 kb on - strand at 1781.200 kb on + strand at 1781.205 kb on + strand at 1781.232 kb on - strand at 1781.289 kb on + strand, within CCNA_01660 at 1781.289 kb on + strand, within CCNA_01660 at 1781.289 kb on + strand, within CCNA_01660 at 1781.297 kb on - strand, within CCNA_01660 at 1781.297 kb on - strand, within CCNA_01660 at 1781.297 kb on - strand, within CCNA_01660 at 1781.297 kb on - strand, within CCNA_01660 at 1781.346 kb on + strand, within CCNA_01660 at 1781.348 kb on - strand, within CCNA_01660 at 1781.354 kb on - strand, within CCNA_01660 at 1781.354 kb on - strand, within CCNA_01660 at 1781.354 kb on - strand, within CCNA_01660 at 1781.359 kb on - strand, within CCNA_01660 at 1781.379 kb on - strand, within CCNA_01660 at 1781.448 kb on + strand, within CCNA_01660 at 1781.509 kb on - strand, within CCNA_01660 at 1781.525 kb on - strand, within CCNA_01660 at 1781.525 kb on - strand, within CCNA_01660 at 1781.615 kb on + strand, within CCNA_01660 at 1781.615 kb on + strand, within CCNA_01660 at 1781.642 kb on - strand, within CCNA_01660 at 1781.653 kb on + strand, within CCNA_01660 at 1781.653 kb on + strand, within CCNA_01660 at 1781.653 kb on + strand, within CCNA_01660 at 1781.683 kb on + strand, within CCNA_01660 at 1781.746 kb on - strand, within CCNA_01660 at 1781.752 kb on + strand, within CCNA_01660 at 1781.757 kb on + strand, within CCNA_01660 at 1781.760 kb on - strand, within CCNA_01660 at 1781.791 kb on + strand, within CCNA_01660 at 1781.934 kb on + strand at 1781.934 kb on + strand at 1781.934 kb on + strand at 1781.934 kb on + strand at 1781.942 kb on - strand at 1781.942 kb on - strand at 1782.222 kb on + strand at 1782.230 kb on - strand at 1782.232 kb on + strand at 1782.232 kb on + strand at 1782.240 kb on - strand at 1782.258 kb on + strand at 1782.259 kb on - strand at 1782.263 kb on + strand at 1782.265 kb on - strand at 1782.276 kb on - strand at 1782.290 kb on + strand at 1782.290 kb on + strand at 1782.290 kb on + strand at 1782.290 kb on + strand at 1782.298 kb on - strand at 1782.298 kb on - strand at 1782.298 kb on - strand at 1782.313 kb on - strand at 1782.316 kb on + strand at 1782.319 kb on - strand at 1782.321 kb on + strand at 1782.327 kb on + strand at 1782.335 kb on - strand at 1782.351 kb on + strand at 1782.351 kb on + strand at 1782.351 kb on + strand at 1782.351 kb on + strand at 1782.351 kb on + strand at 1782.359 kb on - strand at 1782.393 kb on - strand at 1782.409 kb on + strand at 1782.424 kb on - strand at 1782.426 kb on + strand at 1782.449 kb on + strand at 1782.451 kb on + strand at 1782.451 kb on + strand at 1782.452 kb on - strand at 1782.459 kb on - strand at 1782.516 kb on - strand at 1782.521 kb on - strand at 1782.555 kb on + strand at 1782.667 kb on - strand at 1782.678 kb on + strand at 1782.687 kb on - strand at 1782.692 kb on - strand at 1782.698 kb on - strand at 1782.779 kb on - strand at 1782.784 kb on + strand at 1782.802 kb on - strand at 1782.802 kb on - strand at 1782.802 kb on - strand at 1782.802 kb on - strand at 1782.802 kb on - strand at 1782.802 kb on - strand at 1782.811 kb on - strand at 1782.828 kb on + strand, within CCNA_01663 at 1782.829 kb on + strand, within CCNA_01663 at 1782.829 kb on - strand, within CCNA_01663 at 1782.836 kb on - strand, within CCNA_01663 at 1782.836 kb on - strand, within CCNA_01663 at 1782.888 kb on - strand, within CCNA_01663 at 1782.893 kb on - strand, within CCNA_01663 at 1782.893 kb on - strand, within CCNA_01663 at 1782.893 kb on - strand, within CCNA_01663
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 1,780,409 - CCNA_01659 0.37 -0.1 1,780,476 + CCNA_01659 0.43 +1.1 1,780,537 + CCNA_01659 0.49 +0.6 1,780,680 + CCNA_01659 0.62 +0.9 1,780,680 + CCNA_01659 0.62 +0.6 1,780,680 + CCNA_01659 0.62 +0.8 1,780,688 - CCNA_01659 0.62 +0.6 1,780,757 + CCNA_01659 0.68 -1.9 1,780,765 - CCNA_01659 0.69 +0.2 1,780,824 + CCNA_01659 0.74 +0.8 1,780,824 + CCNA_01659 0.74 -0.2 1,780,829 + CCNA_01659 0.75 -0.2 1,780,829 + CCNA_01659 0.75 +0.2 1,780,830 + CCNA_01659 0.75 +1.8 1,780,832 - CCNA_01659 0.75 -0.1 1,780,835 + CCNA_01659 0.75 +0.5 1,780,955 + CCNA_01659 0.86 -0.6 1,780,955 + CCNA_01659 0.86 -0.6 1,780,955 + CCNA_01659 0.86 -0.2 1,781,194 - +0.2 1,781,195 - -0.4 1,781,200 + +0.3 1,781,205 + +0.8 1,781,232 - -1.0 1,781,289 + CCNA_01660 0.10 -0.3 1,781,289 + CCNA_01660 0.10 +0.2 1,781,289 + CCNA_01660 0.10 -0.6 1,781,297 - CCNA_01660 0.11 -2.0 1,781,297 - CCNA_01660 0.11 -0.2 1,781,297 - CCNA_01660 0.11 -0.2 1,781,297 - CCNA_01660 0.11 +0.2 1,781,346 + CCNA_01660 0.18 -0.3 1,781,348 - CCNA_01660 0.19 -1.0 1,781,354 - CCNA_01660 0.19 -1.4 1,781,354 - CCNA_01660 0.19 -2.4 1,781,354 - CCNA_01660 0.19 -2.2 1,781,359 - CCNA_01660 0.20 -0.9 1,781,379 - CCNA_01660 0.23 +0.5 1,781,448 + CCNA_01660 0.33 +0.2 1,781,509 - CCNA_01660 0.42 +0.4 1,781,525 - CCNA_01660 0.44 -0.6 1,781,525 - CCNA_01660 0.44 -0.3 1,781,615 + CCNA_01660 0.57 -1.7 1,781,615 + CCNA_01660 0.57 -1.3 1,781,642 - CCNA_01660 0.61 -1.0 1,781,653 + CCNA_01660 0.63 +0.1 1,781,653 + CCNA_01660 0.63 -1.5 1,781,653 + CCNA_01660 0.63 +0.8 1,781,683 + CCNA_01660 0.67 -1.9 1,781,746 - CCNA_01660 0.76 -1.7 1,781,752 + CCNA_01660 0.77 -1.0 1,781,757 + CCNA_01660 0.78 -1.4 1,781,760 - CCNA_01660 0.78 -1.0 1,781,791 + CCNA_01660 0.83 -1.9 1,781,934 + +0.4 1,781,934 + -0.8 1,781,934 + -1.4 1,781,934 + -1.4 1,781,942 - +1.8 1,781,942 - -1.9 1,782,222 + -0.1 1,782,230 - -0.7 1,782,232 + +1.6 1,782,232 + -1.0 1,782,240 - -0.4 1,782,258 + +0.4 1,782,259 - -0.5 1,782,263 + -0.2 1,782,265 - -0.0 1,782,276 - -0.2 1,782,290 + +0.1 1,782,290 + -1.6 1,782,290 + +0.4 1,782,290 + -1.2 1,782,298 - -1.4 1,782,298 - -1.1 1,782,298 - -2.1 1,782,313 - +1.4 1,782,316 + -0.4 1,782,319 - -1.0 1,782,321 + +0.9 1,782,327 + +0.3 1,782,335 - -0.5 1,782,351 + +2.2 1,782,351 + +0.4 1,782,351 + -2.0 1,782,351 + +0.6 1,782,351 + -1.9 1,782,359 - +1.0 1,782,393 - -1.9 1,782,409 + -1.9 1,782,424 - +1.0 1,782,426 + +1.4 1,782,449 + -1.5 1,782,451 + -0.6 1,782,451 + -1.9 1,782,452 - -0.4 1,782,459 - +0.1 1,782,516 - -1.3 1,782,521 - +0.2 1,782,555 + -0.7 1,782,667 - -0.8 1,782,678 + +0.2 1,782,687 - +0.4 1,782,692 - -0.9 1,782,698 - +1.1 1,782,779 - +0.6 1,782,784 + -0.4 1,782,802 - +1.7 1,782,802 - +0.3 1,782,802 - -0.2 1,782,802 - -0.2 1,782,802 - -0.2 1,782,802 - +1.5 1,782,811 - -1.2 1,782,828 + CCNA_01663 0.10 -2.2 1,782,829 + CCNA_01663 0.10 -2.3 1,782,829 - CCNA_01663 0.10 +0.8 1,782,836 - CCNA_01663 0.11 -0.8 1,782,836 - CCNA_01663 0.11 -1.2 1,782,888 - CCNA_01663 0.14 -1.3 1,782,893 - CCNA_01663 0.14 +0.7 1,782,893 - CCNA_01663 0.14 +0.0 1,782,893 - CCNA_01663 0.14 +0.9
Or see this region's nucleotide sequence