Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01417 and CCNA_01418 are separated by 97 nucleotides CCNA_01418 and CCNA_01419 are separated by 164 nucleotides CCNA_01419 and CCNA_01420 are separated by 32 nucleotides CCNA_01420 and CCNA_01421 are separated by 65 nucleotides
CCNA_01417: CCNA_01417 - 5-aminolevulinic acid synthase, at 1,534,788 to 1,536,014
_01417
CCNA_01418: CCNA_01418 - ROS/MUCR transcriptional regulator, at 1,536,112 to 1,536,558
_01418
CCNA_01419: CCNA_01419 - serine hydroxymethyltransferase, at 1,536,723 to 1,538,009
_01419
CCNA_01420: CCNA_01420 - NrdR family transcriptional regulator, at 1,538,042 to 1,538,515
_01420
CCNA_01421: CCNA_01421 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,538,581 to 1,539,045
_01421
Position (kb)
1536
1537
1538
1539 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1535.966 kb on + strand at 1535.966 kb on + strand at 1535.966 kb on + strand at 1535.978 kb on + strand at 1535.978 kb on + strand at 1535.978 kb on + strand at 1535.978 kb on + strand at 1536.017 kb on - strand at 1536.131 kb on + strand at 1536.131 kb on + strand at 1536.131 kb on + strand at 1536.131 kb on + strand at 1536.132 kb on - strand at 1536.136 kb on + strand at 1536.139 kb on - strand at 1536.139 kb on - strand at 1536.139 kb on - strand at 1536.176 kb on + strand, within CCNA_01418 at 1536.213 kb on + strand, within CCNA_01418 at 1536.221 kb on - strand, within CCNA_01418 at 1536.234 kb on - strand, within CCNA_01418 at 1536.277 kb on - strand, within CCNA_01418 at 1536.280 kb on + strand, within CCNA_01418 at 1536.305 kb on - strand, within CCNA_01418 at 1536.319 kb on + strand, within CCNA_01418 at 1536.324 kb on + strand, within CCNA_01418 at 1536.334 kb on + strand, within CCNA_01418 at 1536.419 kb on + strand, within CCNA_01418 at 1536.419 kb on + strand, within CCNA_01418 at 1536.427 kb on - strand, within CCNA_01418 at 1536.427 kb on - strand, within CCNA_01418 at 1536.429 kb on + strand, within CCNA_01418 at 1536.429 kb on + strand, within CCNA_01418 at 1536.437 kb on - strand, within CCNA_01418 at 1536.437 kb on - strand, within CCNA_01418 at 1536.437 kb on - strand, within CCNA_01418 at 1536.437 kb on - strand, within CCNA_01418 at 1536.437 kb on - strand, within CCNA_01418 at 1536.437 kb on - strand, within CCNA_01418 at 1536.437 kb on - strand, within CCNA_01418 at 1536.437 kb on - strand, within CCNA_01418 at 1536.437 kb on - strand, within CCNA_01418 at 1536.442 kb on - strand, within CCNA_01418 at 1536.474 kb on - strand, within CCNA_01418 at 1536.495 kb on + strand, within CCNA_01418 at 1536.601 kb on + strand at 1536.609 kb on - strand at 1536.609 kb on - strand at 1536.609 kb on - strand at 1536.708 kb on + strand at 1536.708 kb on + strand at 1536.716 kb on - strand at 1536.716 kb on - strand at 1536.761 kb on + strand at 1536.841 kb on + strand at 1537.040 kb on + strand, within CCNA_01419 at 1538.032 kb on + strand at 1538.032 kb on + strand at 1538.095 kb on + strand, within CCNA_01420 at 1538.200 kb on + strand, within CCNA_01420 at 1538.261 kb on + strand, within CCNA_01420 at 1538.280 kb on + strand, within CCNA_01420 at 1538.331 kb on + strand, within CCNA_01420 at 1538.450 kb on + strand, within CCNA_01420 at 1538.467 kb on + strand, within CCNA_01420 at 1538.499 kb on + strand at 1538.509 kb on + strand at 1538.515 kb on - strand at 1538.515 kb on - strand at 1538.517 kb on - strand at 1538.523 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 1,535,966 + +1.6 1,535,966 + +0.9 1,535,966 + +1.5 1,535,978 + +1.6 1,535,978 + +1.5 1,535,978 + +1.4 1,535,978 + +0.7 1,536,017 - -1.6 1,536,131 + -0.3 1,536,131 + -0.1 1,536,131 + -0.1 1,536,131 + +0.2 1,536,132 - +1.1 1,536,136 + -1.9 1,536,139 - +0.1 1,536,139 - +0.1 1,536,139 - +0.4 1,536,176 + CCNA_01418 0.14 -1.9 1,536,213 + CCNA_01418 0.23 +0.4 1,536,221 - CCNA_01418 0.24 +1.2 1,536,234 - CCNA_01418 0.27 -1.6 1,536,277 - CCNA_01418 0.37 +0.3 1,536,280 + CCNA_01418 0.38 -1.5 1,536,305 - CCNA_01418 0.43 +0.5 1,536,319 + CCNA_01418 0.46 +0.9 1,536,324 + CCNA_01418 0.47 -0.7 1,536,334 + CCNA_01418 0.50 +0.5 1,536,419 + CCNA_01418 0.69 -0.3 1,536,419 + CCNA_01418 0.69 -2.5 1,536,427 - CCNA_01418 0.70 -0.1 1,536,427 - CCNA_01418 0.70 +0.3 1,536,429 + CCNA_01418 0.71 -0.1 1,536,429 + CCNA_01418 0.71 -1.9 1,536,437 - CCNA_01418 0.73 -1.3 1,536,437 - CCNA_01418 0.73 -0.6 1,536,437 - CCNA_01418 0.73 -0.3 1,536,437 - CCNA_01418 0.73 +1.1 1,536,437 - CCNA_01418 0.73 +1.3 1,536,437 - CCNA_01418 0.73 +2.0 1,536,437 - CCNA_01418 0.73 -0.7 1,536,437 - CCNA_01418 0.73 +1.7 1,536,437 - CCNA_01418 0.73 +0.8 1,536,442 - CCNA_01418 0.74 +0.7 1,536,474 - CCNA_01418 0.81 -0.7 1,536,495 + CCNA_01418 0.86 -1.7 1,536,601 + -2.2 1,536,609 - -0.4 1,536,609 - +0.2 1,536,609 - +1.3 1,536,708 + +0.0 1,536,708 + -0.9 1,536,716 - -0.3 1,536,716 - -1.1 1,536,761 + -1.5 1,536,841 + +1.8 1,537,040 + CCNA_01419 0.25 -0.3 1,538,032 + +0.1 1,538,032 + +1.1 1,538,095 + CCNA_01420 0.11 -1.4 1,538,200 + CCNA_01420 0.33 +0.7 1,538,261 + CCNA_01420 0.46 -1.2 1,538,280 + CCNA_01420 0.50 +0.4 1,538,331 + CCNA_01420 0.61 -0.5 1,538,450 + CCNA_01420 0.86 -1.6 1,538,467 + CCNA_01420 0.90 +0.5 1,538,499 + +0.2 1,538,509 + -0.4 1,538,515 - -0.7 1,538,515 - -0.7 1,538,517 - -0.6 1,538,523 + +0.4
Or see this region's nucleotide sequence