Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01096 and CCNA_01097 are separated by 248 nucleotides CCNA_01097 and CCNA_01098 are separated by 15 nucleotides CCNA_01098 and CCNA_01099 are separated by 121 nucleotides CCNA_01099 and CCNA_01100 are separated by 66 nucleotides
CCNA_01096: CCNA_01096 - phenylalanyl-tRNA synthetase alpha chain, at 1,202,090 to 1,203,163
_01096
CCNA_01097: CCNA_01097 - LSU ribosomal protein L20P, at 1,203,412 to 1,203,768
_01097
CCNA_01098: CCNA_01098 - LSU ribosomal protein L35P, at 1,203,784 to 1,203,984
_01098
CCNA_01099: CCNA_01099 - tetracycline resistance protein, at 1,204,106 to 1,205,296
_01099
CCNA_01100: CCNA_01100 - acylamino-acid-releasing enzyme, at 1,205,363 to 1,207,291
_01100
Position (kb)
1204
1205
1206 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1203.193 kb on - strand at 1203.195 kb on + strand at 1203.195 kb on + strand at 1203.195 kb on + strand at 1203.203 kb on - strand at 1203.203 kb on - strand at 1203.203 kb on - strand at 1203.203 kb on - strand at 1203.255 kb on - strand at 1203.309 kb on - strand at 1203.310 kb on + strand at 1203.418 kb on - strand at 1203.433 kb on - strand at 1204.111 kb on - strand at 1204.111 kb on - strand at 1204.124 kb on - strand at 1204.144 kb on - strand at 1204.163 kb on + strand at 1204.163 kb on + strand at 1204.168 kb on + strand at 1204.171 kb on - strand at 1204.171 kb on - strand at 1204.171 kb on - strand at 1204.194 kb on + strand at 1204.220 kb on + strand at 1204.239 kb on + strand, within CCNA_01099 at 1204.246 kb on - strand, within CCNA_01099 at 1204.264 kb on + strand, within CCNA_01099 at 1204.268 kb on - strand, within CCNA_01099 at 1204.270 kb on + strand, within CCNA_01099 at 1204.285 kb on - strand, within CCNA_01099 at 1204.316 kb on - strand, within CCNA_01099 at 1204.339 kb on - strand, within CCNA_01099 at 1204.348 kb on + strand, within CCNA_01099 at 1204.356 kb on - strand, within CCNA_01099 at 1204.382 kb on - strand, within CCNA_01099 at 1204.412 kb on - strand, within CCNA_01099 at 1204.518 kb on + strand, within CCNA_01099 at 1204.526 kb on - strand, within CCNA_01099 at 1204.536 kb on - strand, within CCNA_01099 at 1204.536 kb on - strand, within CCNA_01099 at 1204.586 kb on + strand, within CCNA_01099 at 1204.620 kb on + strand, within CCNA_01099 at 1204.624 kb on + strand, within CCNA_01099 at 1204.659 kb on - strand, within CCNA_01099 at 1204.676 kb on + strand, within CCNA_01099 at 1204.683 kb on + strand, within CCNA_01099 at 1204.690 kb on + strand, within CCNA_01099 at 1204.698 kb on - strand, within CCNA_01099 at 1204.708 kb on + strand, within CCNA_01099 at 1204.731 kb on - strand, within CCNA_01099 at 1204.785 kb on + strand, within CCNA_01099 at 1204.793 kb on - strand, within CCNA_01099 at 1204.801 kb on + strand, within CCNA_01099 at 1204.803 kb on + strand, within CCNA_01099 at 1204.803 kb on + strand, within CCNA_01099 at 1204.829 kb on - strand, within CCNA_01099 at 1204.839 kb on - strand, within CCNA_01099 at 1204.841 kb on + strand, within CCNA_01099 at 1204.844 kb on - strand, within CCNA_01099 at 1204.854 kb on - strand, within CCNA_01099 at 1204.867 kb on - strand, within CCNA_01099 at 1204.881 kb on + strand, within CCNA_01099 at 1204.894 kb on - strand, within CCNA_01099 at 1204.894 kb on - strand, within CCNA_01099 at 1204.940 kb on + strand, within CCNA_01099 at 1204.950 kb on + strand, within CCNA_01099 at 1205.009 kb on - strand, within CCNA_01099 at 1205.029 kb on - strand, within CCNA_01099 at 1205.035 kb on + strand, within CCNA_01099 at 1205.036 kb on + strand, within CCNA_01099 at 1205.036 kb on + strand, within CCNA_01099 at 1205.044 kb on - strand, within CCNA_01099 at 1205.066 kb on - strand, within CCNA_01099 at 1205.071 kb on - strand, within CCNA_01099 at 1205.071 kb on - strand, within CCNA_01099 at 1205.128 kb on + strand, within CCNA_01099 at 1205.128 kb on + strand, within CCNA_01099 at 1205.136 kb on - strand, within CCNA_01099 at 1205.141 kb on - strand, within CCNA_01099 at 1205.150 kb on - strand, within CCNA_01099 at 1205.247 kb on + strand at 1205.247 kb on + strand at 1205.247 kb on + strand at 1205.255 kb on - strand at 1205.314 kb on - strand at 1205.316 kb on - strand at 1205.413 kb on - strand at 1205.420 kb on - strand at 1205.454 kb on - strand at 1205.487 kb on + strand at 1205.505 kb on - strand at 1205.516 kb on + strand at 1205.519 kb on - strand at 1205.521 kb on + strand at 1205.524 kb on - strand at 1205.528 kb on + strand at 1205.536 kb on - strand at 1205.580 kb on + strand, within CCNA_01100 at 1205.622 kb on - strand, within CCNA_01100 at 1205.622 kb on - strand, within CCNA_01100 at 1205.631 kb on - strand, within CCNA_01100 at 1205.631 kb on - strand, within CCNA_01100 at 1205.655 kb on + strand, within CCNA_01100 at 1205.730 kb on - strand, within CCNA_01100 at 1205.730 kb on - strand, within CCNA_01100 at 1205.738 kb on + strand, within CCNA_01100 at 1205.753 kb on + strand, within CCNA_01100 at 1205.757 kb on - strand, within CCNA_01100 at 1205.761 kb on - strand, within CCNA_01100 at 1205.761 kb on - strand, within CCNA_01100 at 1205.766 kb on - strand, within CCNA_01100 at 1205.773 kb on + strand, within CCNA_01100 at 1205.776 kb on - strand, within CCNA_01100 at 1205.908 kb on + strand, within CCNA_01100 at 1205.927 kb on - strand, within CCNA_01100 at 1205.930 kb on + strand, within CCNA_01100 at 1205.944 kb on + strand, within CCNA_01100 at 1205.944 kb on + strand, within CCNA_01100 at 1205.944 kb on + strand, within CCNA_01100 at 1205.944 kb on + strand, within CCNA_01100 at 1205.952 kb on - strand, within CCNA_01100 at 1205.952 kb on - strand, within CCNA_01100 at 1205.952 kb on - strand, within CCNA_01100 at 1205.952 kb on - strand, within CCNA_01100 at 1205.971 kb on + strand, within CCNA_01100 at 1205.971 kb on - strand, within CCNA_01100 at 1205.976 kb on + strand, within CCNA_01100 at 1205.976 kb on + strand, within CCNA_01100 at 1205.976 kb on + strand, within CCNA_01100 at 1205.976 kb on + strand, within CCNA_01100 at 1205.976 kb on + strand, within CCNA_01100 at 1205.984 kb on - strand, within CCNA_01100 at 1205.984 kb on - strand, within CCNA_01100 at 1205.984 kb on - strand, within CCNA_01100 at 1205.984 kb on - strand, within CCNA_01100 at 1205.990 kb on + strand, within CCNA_01100 at 1205.990 kb on + strand, within CCNA_01100 at 1205.990 kb on + strand, within CCNA_01100 at 1205.990 kb on + strand, within CCNA_01100 at 1205.990 kb on + strand, within CCNA_01100 at 1205.990 kb on + strand, within CCNA_01100 at 1205.990 kb on + strand, within CCNA_01100 at 1205.990 kb on + strand, within CCNA_01100 at 1205.998 kb on - strand, within CCNA_01100 at 1205.998 kb on - strand, within CCNA_01100 at 1206.011 kb on + strand, within CCNA_01100 at 1206.032 kb on + strand, within CCNA_01100 at 1206.042 kb on - strand, within CCNA_01100 at 1206.053 kb on - strand, within CCNA_01100 at 1206.087 kb on + strand, within CCNA_01100 at 1206.097 kb on + strand, within CCNA_01100 at 1206.097 kb on + strand, within CCNA_01100 at 1206.113 kb on + strand, within CCNA_01100 at 1206.113 kb on + strand, within CCNA_01100 at 1206.133 kb on + strand, within CCNA_01100 at 1206.145 kb on - strand, within CCNA_01100 at 1206.156 kb on + strand, within CCNA_01100 at 1206.156 kb on + strand, within CCNA_01100 at 1206.173 kb on + strand, within CCNA_01100 at 1206.176 kb on - strand, within CCNA_01100 at 1206.181 kb on - strand, within CCNA_01100 at 1206.181 kb on - strand, within CCNA_01100 at 1206.181 kb on - strand, within CCNA_01100 at 1206.183 kb on + strand, within CCNA_01100 at 1206.191 kb on - strand, within CCNA_01100 at 1206.191 kb on - strand, within CCNA_01100 at 1206.230 kb on - strand, within CCNA_01100 at 1206.247 kb on - strand, within CCNA_01100
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 1,203,193 - +1.5 1,203,195 + +0.9 1,203,195 + -0.3 1,203,195 + +1.3 1,203,203 - -0.0 1,203,203 - -0.3 1,203,203 - -0.7 1,203,203 - +0.3 1,203,255 - +0.3 1,203,309 - +1.1 1,203,310 + +0.6 1,203,418 - +0.2 1,203,433 - +0.4 1,204,111 - -0.4 1,204,111 - +0.8 1,204,124 - +0.9 1,204,144 - +0.9 1,204,163 + -0.2 1,204,163 + +1.7 1,204,168 + +0.1 1,204,171 - +1.6 1,204,171 - +1.1 1,204,171 - +1.5 1,204,194 + -0.5 1,204,220 + +0.3 1,204,239 + CCNA_01099 0.11 +0.1 1,204,246 - CCNA_01099 0.12 +2.0 1,204,264 + CCNA_01099 0.13 +2.6 1,204,268 - CCNA_01099 0.14 +1.7 1,204,270 + CCNA_01099 0.14 -0.3 1,204,285 - CCNA_01099 0.15 +1.0 1,204,316 - CCNA_01099 0.18 +0.3 1,204,339 - CCNA_01099 0.20 +1.7 1,204,348 + CCNA_01099 0.20 +0.3 1,204,356 - CCNA_01099 0.21 +0.7 1,204,382 - CCNA_01099 0.23 +1.6 1,204,412 - CCNA_01099 0.26 +1.9 1,204,518 + CCNA_01099 0.35 -0.9 1,204,526 - CCNA_01099 0.35 +1.2 1,204,536 - CCNA_01099 0.36 +2.6 1,204,536 - CCNA_01099 0.36 +1.9 1,204,586 + CCNA_01099 0.40 +4.3 1,204,620 + CCNA_01099 0.43 +0.7 1,204,624 + CCNA_01099 0.43 -0.6 1,204,659 - CCNA_01099 0.46 +3.0 1,204,676 + CCNA_01099 0.48 -1.5 1,204,683 + CCNA_01099 0.48 -0.8 1,204,690 + CCNA_01099 0.49 +2.0 1,204,698 - CCNA_01099 0.50 +0.4 1,204,708 + CCNA_01099 0.51 +2.7 1,204,731 - CCNA_01099 0.52 +3.3 1,204,785 + CCNA_01099 0.57 -0.1 1,204,793 - CCNA_01099 0.58 -1.0 1,204,801 + CCNA_01099 0.58 -1.5 1,204,803 + CCNA_01099 0.59 -0.8 1,204,803 + CCNA_01099 0.59 +1.0 1,204,829 - CCNA_01099 0.61 +1.3 1,204,839 - CCNA_01099 0.62 +1.1 1,204,841 + CCNA_01099 0.62 -1.6 1,204,844 - CCNA_01099 0.62 +1.1 1,204,854 - CCNA_01099 0.63 +0.8 1,204,867 - CCNA_01099 0.64 +1.8 1,204,881 + CCNA_01099 0.65 -0.7 1,204,894 - CCNA_01099 0.66 +1.6 1,204,894 - CCNA_01099 0.66 +1.5 1,204,940 + CCNA_01099 0.70 -1.9 1,204,950 + CCNA_01099 0.71 +0.5 1,205,009 - CCNA_01099 0.76 +2.3 1,205,029 - CCNA_01099 0.77 +1.9 1,205,035 + CCNA_01099 0.78 +0.2 1,205,036 + CCNA_01099 0.78 +1.2 1,205,036 + CCNA_01099 0.78 -1.4 1,205,044 - CCNA_01099 0.79 -0.3 1,205,066 - CCNA_01099 0.81 +0.9 1,205,071 - CCNA_01099 0.81 +1.2 1,205,071 - CCNA_01099 0.81 +2.4 1,205,128 + CCNA_01099 0.86 -0.3 1,205,128 + CCNA_01099 0.86 +1.1 1,205,136 - CCNA_01099 0.86 +1.1 1,205,141 - CCNA_01099 0.87 +1.5 1,205,150 - CCNA_01099 0.88 +0.9 1,205,247 + +2.7 1,205,247 + +1.9 1,205,247 + +1.2 1,205,255 - +1.9 1,205,314 - -2.7 1,205,316 - +1.4 1,205,413 - -0.4 1,205,420 - +1.3 1,205,454 - +0.8 1,205,487 + +0.7 1,205,505 - -0.1 1,205,516 + +2.3 1,205,519 - +1.7 1,205,521 + -1.3 1,205,524 - -0.6 1,205,528 + -0.3 1,205,536 - +0.6 1,205,580 + CCNA_01100 0.11 +1.8 1,205,622 - CCNA_01100 0.13 -1.3 1,205,622 - CCNA_01100 0.13 +2.0 1,205,631 - CCNA_01100 0.14 +0.7 1,205,631 - CCNA_01100 0.14 +0.4 1,205,655 + CCNA_01100 0.15 -1.1 1,205,730 - CCNA_01100 0.19 -0.7 1,205,730 - CCNA_01100 0.19 +0.6 1,205,738 + CCNA_01100 0.19 +2.3 1,205,753 + CCNA_01100 0.20 -2.9 1,205,757 - CCNA_01100 0.20 -0.2 1,205,761 - CCNA_01100 0.21 +0.7 1,205,761 - CCNA_01100 0.21 -0.5 1,205,766 - CCNA_01100 0.21 +1.0 1,205,773 + CCNA_01100 0.21 +0.3 1,205,776 - CCNA_01100 0.21 +0.9 1,205,908 + CCNA_01100 0.28 +1.0 1,205,927 - CCNA_01100 0.29 -2.6 1,205,930 + CCNA_01100 0.29 -0.8 1,205,944 + CCNA_01100 0.30 +0.0 1,205,944 + CCNA_01100 0.30 -0.4 1,205,944 + CCNA_01100 0.30 +2.0 1,205,944 + CCNA_01100 0.30 -0.0 1,205,952 - CCNA_01100 0.31 -0.1 1,205,952 - CCNA_01100 0.31 -0.3 1,205,952 - CCNA_01100 0.31 -0.9 1,205,952 - CCNA_01100 0.31 +0.4 1,205,971 + CCNA_01100 0.32 -0.7 1,205,971 - CCNA_01100 0.32 -0.3 1,205,976 + CCNA_01100 0.32 -1.0 1,205,976 + CCNA_01100 0.32 +0.7 1,205,976 + CCNA_01100 0.32 +1.0 1,205,976 + CCNA_01100 0.32 +1.6 1,205,976 + CCNA_01100 0.32 -0.4 1,205,984 - CCNA_01100 0.32 -0.2 1,205,984 - CCNA_01100 0.32 -0.9 1,205,984 - CCNA_01100 0.32 -0.0 1,205,984 - CCNA_01100 0.32 -0.8 1,205,990 + CCNA_01100 0.33 -1.5 1,205,990 + CCNA_01100 0.33 -0.4 1,205,990 + CCNA_01100 0.33 -0.3 1,205,990 + CCNA_01100 0.33 +1.7 1,205,990 + CCNA_01100 0.33 +0.8 1,205,990 + CCNA_01100 0.33 +2.6 1,205,990 + CCNA_01100 0.33 -0.3 1,205,990 + CCNA_01100 0.33 -0.3 1,205,998 - CCNA_01100 0.33 +1.6 1,205,998 - CCNA_01100 0.33 -0.4 1,206,011 + CCNA_01100 0.34 -0.1 1,206,032 + CCNA_01100 0.35 -0.9 1,206,042 - CCNA_01100 0.35 +1.0 1,206,053 - CCNA_01100 0.36 +0.8 1,206,087 + CCNA_01100 0.38 +1.0 1,206,097 + CCNA_01100 0.38 -0.7 1,206,097 + CCNA_01100 0.38 -0.3 1,206,113 + CCNA_01100 0.39 +0.5 1,206,113 + CCNA_01100 0.39 +1.0 1,206,133 + CCNA_01100 0.40 -0.8 1,206,145 - CCNA_01100 0.41 +0.1 1,206,156 + CCNA_01100 0.41 -2.0 1,206,156 + CCNA_01100 0.41 +0.5 1,206,173 + CCNA_01100 0.42 -2.2 1,206,176 - CCNA_01100 0.42 +0.8 1,206,181 - CCNA_01100 0.42 +1.3 1,206,181 - CCNA_01100 0.42 +2.3 1,206,181 - CCNA_01100 0.42 -0.7 1,206,183 + CCNA_01100 0.43 -1.4 1,206,191 - CCNA_01100 0.43 +1.8 1,206,191 - CCNA_01100 0.43 -0.9 1,206,230 - CCNA_01100 0.45 -2.6 1,206,247 - CCNA_01100 0.46 +0.3
Or see this region's nucleotide sequence