Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01099

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01096 and CCNA_01097 are separated by 248 nucleotidesCCNA_01097 and CCNA_01098 are separated by 15 nucleotidesCCNA_01098 and CCNA_01099 are separated by 121 nucleotidesCCNA_01099 and CCNA_01100 are separated by 66 nucleotides CCNA_01096: CCNA_01096 - phenylalanyl-tRNA synthetase alpha chain, at 1,202,090 to 1,203,163 _01096 CCNA_01097: CCNA_01097 - LSU ribosomal protein L20P, at 1,203,412 to 1,203,768 _01097 CCNA_01098: CCNA_01098 - LSU ribosomal protein L35P, at 1,203,784 to 1,203,984 _01098 CCNA_01099: CCNA_01099 - tetracycline resistance protein, at 1,204,106 to 1,205,296 _01099 CCNA_01100: CCNA_01100 - acylamino-acid-releasing enzyme, at 1,205,363 to 1,207,291 _01100 Position (kb) 1204 1205 1206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1203.193 kb on - strandat 1203.195 kb on + strandat 1203.195 kb on + strandat 1203.195 kb on + strandat 1203.203 kb on - strandat 1203.203 kb on - strandat 1203.203 kb on - strandat 1203.203 kb on - strandat 1203.255 kb on - strandat 1203.309 kb on - strandat 1203.310 kb on + strandat 1203.418 kb on - strandat 1203.433 kb on - strandat 1204.111 kb on - strandat 1204.111 kb on - strandat 1204.124 kb on - strandat 1204.144 kb on - strandat 1204.163 kb on + strandat 1204.163 kb on + strandat 1204.168 kb on + strandat 1204.171 kb on - strandat 1204.171 kb on - strandat 1204.171 kb on - strandat 1204.194 kb on + strandat 1204.220 kb on + strandat 1204.239 kb on + strand, within CCNA_01099at 1204.246 kb on - strand, within CCNA_01099at 1204.264 kb on + strand, within CCNA_01099at 1204.268 kb on - strand, within CCNA_01099at 1204.270 kb on + strand, within CCNA_01099at 1204.285 kb on - strand, within CCNA_01099at 1204.316 kb on - strand, within CCNA_01099at 1204.339 kb on - strand, within CCNA_01099at 1204.348 kb on + strand, within CCNA_01099at 1204.356 kb on - strand, within CCNA_01099at 1204.382 kb on - strand, within CCNA_01099at 1204.412 kb on - strand, within CCNA_01099at 1204.518 kb on + strand, within CCNA_01099at 1204.526 kb on - strand, within CCNA_01099at 1204.536 kb on - strand, within CCNA_01099at 1204.536 kb on - strand, within CCNA_01099at 1204.586 kb on + strand, within CCNA_01099at 1204.620 kb on + strand, within CCNA_01099at 1204.624 kb on + strand, within CCNA_01099at 1204.659 kb on - strand, within CCNA_01099at 1204.676 kb on + strand, within CCNA_01099at 1204.683 kb on + strand, within CCNA_01099at 1204.690 kb on + strand, within CCNA_01099at 1204.698 kb on - strand, within CCNA_01099at 1204.708 kb on + strand, within CCNA_01099at 1204.731 kb on - strand, within CCNA_01099at 1204.785 kb on + strand, within CCNA_01099at 1204.793 kb on - strand, within CCNA_01099at 1204.801 kb on + strand, within CCNA_01099at 1204.803 kb on + strand, within CCNA_01099at 1204.803 kb on + strand, within CCNA_01099at 1204.829 kb on - strand, within CCNA_01099at 1204.839 kb on - strand, within CCNA_01099at 1204.841 kb on + strand, within CCNA_01099at 1204.844 kb on - strand, within CCNA_01099at 1204.854 kb on - strand, within CCNA_01099at 1204.867 kb on - strand, within CCNA_01099at 1204.881 kb on + strand, within CCNA_01099at 1204.894 kb on - strand, within CCNA_01099at 1204.894 kb on - strand, within CCNA_01099at 1204.940 kb on + strand, within CCNA_01099at 1204.950 kb on + strand, within CCNA_01099at 1205.009 kb on - strand, within CCNA_01099at 1205.029 kb on - strand, within CCNA_01099at 1205.035 kb on + strand, within CCNA_01099at 1205.036 kb on + strand, within CCNA_01099at 1205.036 kb on + strand, within CCNA_01099at 1205.044 kb on - strand, within CCNA_01099at 1205.066 kb on - strand, within CCNA_01099at 1205.071 kb on - strand, within CCNA_01099at 1205.071 kb on - strand, within CCNA_01099at 1205.128 kb on + strand, within CCNA_01099at 1205.128 kb on + strand, within CCNA_01099at 1205.136 kb on - strand, within CCNA_01099at 1205.141 kb on - strand, within CCNA_01099at 1205.150 kb on - strand, within CCNA_01099at 1205.247 kb on + strandat 1205.247 kb on + strandat 1205.247 kb on + strandat 1205.255 kb on - strandat 1205.314 kb on - strandat 1205.316 kb on - strandat 1205.413 kb on - strandat 1205.420 kb on - strandat 1205.454 kb on - strandat 1205.487 kb on + strandat 1205.505 kb on - strandat 1205.516 kb on + strandat 1205.519 kb on - strandat 1205.521 kb on + strandat 1205.524 kb on - strandat 1205.528 kb on + strandat 1205.536 kb on - strandat 1205.580 kb on + strand, within CCNA_01100at 1205.622 kb on - strand, within CCNA_01100at 1205.622 kb on - strand, within CCNA_01100at 1205.631 kb on - strand, within CCNA_01100at 1205.631 kb on - strand, within CCNA_01100at 1205.655 kb on + strand, within CCNA_01100at 1205.730 kb on - strand, within CCNA_01100at 1205.730 kb on - strand, within CCNA_01100at 1205.738 kb on + strand, within CCNA_01100at 1205.753 kb on + strand, within CCNA_01100at 1205.757 kb on - strand, within CCNA_01100at 1205.761 kb on - strand, within CCNA_01100at 1205.761 kb on - strand, within CCNA_01100at 1205.766 kb on - strand, within CCNA_01100at 1205.773 kb on + strand, within CCNA_01100at 1205.776 kb on - strand, within CCNA_01100at 1205.908 kb on + strand, within CCNA_01100at 1205.927 kb on - strand, within CCNA_01100at 1205.930 kb on + strand, within CCNA_01100at 1205.944 kb on + strand, within CCNA_01100at 1205.944 kb on + strand, within CCNA_01100at 1205.944 kb on + strand, within CCNA_01100at 1205.944 kb on + strand, within CCNA_01100at 1205.952 kb on - strand, within CCNA_01100at 1205.952 kb on - strand, within CCNA_01100at 1205.952 kb on - strand, within CCNA_01100at 1205.952 kb on - strand, within CCNA_01100at 1205.971 kb on + strand, within CCNA_01100at 1205.971 kb on - strand, within CCNA_01100at 1205.976 kb on + strand, within CCNA_01100at 1205.976 kb on + strand, within CCNA_01100at 1205.976 kb on + strand, within CCNA_01100at 1205.976 kb on + strand, within CCNA_01100at 1205.976 kb on + strand, within CCNA_01100at 1205.984 kb on - strand, within CCNA_01100at 1205.984 kb on - strand, within CCNA_01100at 1205.984 kb on - strand, within CCNA_01100at 1205.984 kb on - strand, within CCNA_01100at 1205.990 kb on + strand, within CCNA_01100at 1205.990 kb on + strand, within CCNA_01100at 1205.990 kb on + strand, within CCNA_01100at 1205.990 kb on + strand, within CCNA_01100at 1205.990 kb on + strand, within CCNA_01100at 1205.990 kb on + strand, within CCNA_01100at 1205.990 kb on + strand, within CCNA_01100at 1205.990 kb on + strand, within CCNA_01100at 1205.998 kb on - strand, within CCNA_01100at 1205.998 kb on - strand, within CCNA_01100at 1206.011 kb on + strand, within CCNA_01100at 1206.032 kb on + strand, within CCNA_01100at 1206.042 kb on - strand, within CCNA_01100at 1206.053 kb on - strand, within CCNA_01100at 1206.087 kb on + strand, within CCNA_01100at 1206.097 kb on + strand, within CCNA_01100at 1206.097 kb on + strand, within CCNA_01100at 1206.113 kb on + strand, within CCNA_01100at 1206.113 kb on + strand, within CCNA_01100at 1206.133 kb on + strand, within CCNA_01100at 1206.145 kb on - strand, within CCNA_01100at 1206.156 kb on + strand, within CCNA_01100at 1206.156 kb on + strand, within CCNA_01100at 1206.173 kb on + strand, within CCNA_01100at 1206.176 kb on - strand, within CCNA_01100at 1206.181 kb on - strand, within CCNA_01100at 1206.181 kb on - strand, within CCNA_01100at 1206.181 kb on - strand, within CCNA_01100at 1206.183 kb on + strand, within CCNA_01100at 1206.191 kb on - strand, within CCNA_01100at 1206.191 kb on - strand, within CCNA_01100at 1206.230 kb on - strand, within CCNA_01100at 1206.247 kb on - strand, within CCNA_01100

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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1,203,193 - +1.5
1,203,195 + +0.9
1,203,195 + -0.3
1,203,195 + +1.3
1,203,203 - -0.0
1,203,203 - -0.3
1,203,203 - -0.7
1,203,203 - +0.3
1,203,255 - +0.3
1,203,309 - +1.1
1,203,310 + +0.6
1,203,418 - +0.2
1,203,433 - +0.4
1,204,111 - -0.4
1,204,111 - +0.8
1,204,124 - +0.9
1,204,144 - +0.9
1,204,163 + -0.2
1,204,163 + +1.7
1,204,168 + +0.1
1,204,171 - +1.6
1,204,171 - +1.1
1,204,171 - +1.5
1,204,194 + -0.5
1,204,220 + +0.3
1,204,239 + CCNA_01099 0.11 +0.1
1,204,246 - CCNA_01099 0.12 +2.0
1,204,264 + CCNA_01099 0.13 +2.6
1,204,268 - CCNA_01099 0.14 +1.7
1,204,270 + CCNA_01099 0.14 -0.3
1,204,285 - CCNA_01099 0.15 +1.0
1,204,316 - CCNA_01099 0.18 +0.3
1,204,339 - CCNA_01099 0.20 +1.7
1,204,348 + CCNA_01099 0.20 +0.3
1,204,356 - CCNA_01099 0.21 +0.7
1,204,382 - CCNA_01099 0.23 +1.6
1,204,412 - CCNA_01099 0.26 +1.9
1,204,518 + CCNA_01099 0.35 -0.9
1,204,526 - CCNA_01099 0.35 +1.2
1,204,536 - CCNA_01099 0.36 +2.6
1,204,536 - CCNA_01099 0.36 +1.9
1,204,586 + CCNA_01099 0.40 +4.3
1,204,620 + CCNA_01099 0.43 +0.7
1,204,624 + CCNA_01099 0.43 -0.6
1,204,659 - CCNA_01099 0.46 +3.0
1,204,676 + CCNA_01099 0.48 -1.5
1,204,683 + CCNA_01099 0.48 -0.8
1,204,690 + CCNA_01099 0.49 +2.0
1,204,698 - CCNA_01099 0.50 +0.4
1,204,708 + CCNA_01099 0.51 +2.7
1,204,731 - CCNA_01099 0.52 +3.3
1,204,785 + CCNA_01099 0.57 -0.1
1,204,793 - CCNA_01099 0.58 -1.0
1,204,801 + CCNA_01099 0.58 -1.5
1,204,803 + CCNA_01099 0.59 -0.8
1,204,803 + CCNA_01099 0.59 +1.0
1,204,829 - CCNA_01099 0.61 +1.3
1,204,839 - CCNA_01099 0.62 +1.1
1,204,841 + CCNA_01099 0.62 -1.6
1,204,844 - CCNA_01099 0.62 +1.1
1,204,854 - CCNA_01099 0.63 +0.8
1,204,867 - CCNA_01099 0.64 +1.8
1,204,881 + CCNA_01099 0.65 -0.7
1,204,894 - CCNA_01099 0.66 +1.6
1,204,894 - CCNA_01099 0.66 +1.5
1,204,940 + CCNA_01099 0.70 -1.9
1,204,950 + CCNA_01099 0.71 +0.5
1,205,009 - CCNA_01099 0.76 +2.3
1,205,029 - CCNA_01099 0.77 +1.9
1,205,035 + CCNA_01099 0.78 +0.2
1,205,036 + CCNA_01099 0.78 +1.2
1,205,036 + CCNA_01099 0.78 -1.4
1,205,044 - CCNA_01099 0.79 -0.3
1,205,066 - CCNA_01099 0.81 +0.9
1,205,071 - CCNA_01099 0.81 +1.2
1,205,071 - CCNA_01099 0.81 +2.4
1,205,128 + CCNA_01099 0.86 -0.3
1,205,128 + CCNA_01099 0.86 +1.1
1,205,136 - CCNA_01099 0.86 +1.1
1,205,141 - CCNA_01099 0.87 +1.5
1,205,150 - CCNA_01099 0.88 +0.9
1,205,247 + +2.7
1,205,247 + +1.9
1,205,247 + +1.2
1,205,255 - +1.9
1,205,314 - -2.7
1,205,316 - +1.4
1,205,413 - -0.4
1,205,420 - +1.3
1,205,454 - +0.8
1,205,487 + +0.7
1,205,505 - -0.1
1,205,516 + +2.3
1,205,519 - +1.7
1,205,521 + -1.3
1,205,524 - -0.6
1,205,528 + -0.3
1,205,536 - +0.6
1,205,580 + CCNA_01100 0.11 +1.8
1,205,622 - CCNA_01100 0.13 -1.3
1,205,622 - CCNA_01100 0.13 +2.0
1,205,631 - CCNA_01100 0.14 +0.7
1,205,631 - CCNA_01100 0.14 +0.4
1,205,655 + CCNA_01100 0.15 -1.1
1,205,730 - CCNA_01100 0.19 -0.7
1,205,730 - CCNA_01100 0.19 +0.6
1,205,738 + CCNA_01100 0.19 +2.3
1,205,753 + CCNA_01100 0.20 -2.9
1,205,757 - CCNA_01100 0.20 -0.2
1,205,761 - CCNA_01100 0.21 +0.7
1,205,761 - CCNA_01100 0.21 -0.5
1,205,766 - CCNA_01100 0.21 +1.0
1,205,773 + CCNA_01100 0.21 +0.3
1,205,776 - CCNA_01100 0.21 +0.9
1,205,908 + CCNA_01100 0.28 +1.0
1,205,927 - CCNA_01100 0.29 -2.6
1,205,930 + CCNA_01100 0.29 -0.8
1,205,944 + CCNA_01100 0.30 +0.0
1,205,944 + CCNA_01100 0.30 -0.4
1,205,944 + CCNA_01100 0.30 +2.0
1,205,944 + CCNA_01100 0.30 -0.0
1,205,952 - CCNA_01100 0.31 -0.1
1,205,952 - CCNA_01100 0.31 -0.3
1,205,952 - CCNA_01100 0.31 -0.9
1,205,952 - CCNA_01100 0.31 +0.4
1,205,971 + CCNA_01100 0.32 -0.7
1,205,971 - CCNA_01100 0.32 -0.3
1,205,976 + CCNA_01100 0.32 -1.0
1,205,976 + CCNA_01100 0.32 +0.7
1,205,976 + CCNA_01100 0.32 +1.0
1,205,976 + CCNA_01100 0.32 +1.6
1,205,976 + CCNA_01100 0.32 -0.4
1,205,984 - CCNA_01100 0.32 -0.2
1,205,984 - CCNA_01100 0.32 -0.9
1,205,984 - CCNA_01100 0.32 -0.0
1,205,984 - CCNA_01100 0.32 -0.8
1,205,990 + CCNA_01100 0.33 -1.5
1,205,990 + CCNA_01100 0.33 -0.4
1,205,990 + CCNA_01100 0.33 -0.3
1,205,990 + CCNA_01100 0.33 +1.7
1,205,990 + CCNA_01100 0.33 +0.8
1,205,990 + CCNA_01100 0.33 +2.6
1,205,990 + CCNA_01100 0.33 -0.3
1,205,990 + CCNA_01100 0.33 -0.3
1,205,998 - CCNA_01100 0.33 +1.6
1,205,998 - CCNA_01100 0.33 -0.4
1,206,011 + CCNA_01100 0.34 -0.1
1,206,032 + CCNA_01100 0.35 -0.9
1,206,042 - CCNA_01100 0.35 +1.0
1,206,053 - CCNA_01100 0.36 +0.8
1,206,087 + CCNA_01100 0.38 +1.0
1,206,097 + CCNA_01100 0.38 -0.7
1,206,097 + CCNA_01100 0.38 -0.3
1,206,113 + CCNA_01100 0.39 +0.5
1,206,113 + CCNA_01100 0.39 +1.0
1,206,133 + CCNA_01100 0.40 -0.8
1,206,145 - CCNA_01100 0.41 +0.1
1,206,156 + CCNA_01100 0.41 -2.0
1,206,156 + CCNA_01100 0.41 +0.5
1,206,173 + CCNA_01100 0.42 -2.2
1,206,176 - CCNA_01100 0.42 +0.8
1,206,181 - CCNA_01100 0.42 +1.3
1,206,181 - CCNA_01100 0.42 +2.3
1,206,181 - CCNA_01100 0.42 -0.7
1,206,183 + CCNA_01100 0.43 -1.4
1,206,191 - CCNA_01100 0.43 +1.8
1,206,191 - CCNA_01100 0.43 -0.9
1,206,230 - CCNA_01100 0.45 -2.6
1,206,247 - CCNA_01100 0.46 +0.3

Or see this region's nucleotide sequence