Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01060

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01059 and CCNA_01060 are separated by 242 nucleotidesCCNA_01060 and CCNA_01061 are separated by 67 nucleotides CCNA_01059: CCNA_01059 - S-layer protein rsaA, at 1,159,693 to 1,162,773 _01059 CCNA_01060: CCNA_01060 - type I protein secretion ATP-binding protein RsaD, at 1,163,016 to 1,164,752 _01060 CCNA_01061: CCNA_01061 - type I secretion adaptor protein RsaE, at 1,164,820 to 1,166,130 _01061 Position (kb) 1163 1164 1165Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 1162.257 kb on + strand, within CCNA_01059at 1162.359 kb on + strand, within CCNA_01059at 1162.359 kb on + strand, within CCNA_01059at 1162.382 kb on + strand, within CCNA_01059at 1162.796 kb on + strandat 1162.888 kb on - strandat 1162.981 kb on - strandat 1163.057 kb on + strandat 1163.087 kb on - strandat 1163.265 kb on - strand, within CCNA_01060at 1163.315 kb on + strand, within CCNA_01060at 1163.396 kb on + strand, within CCNA_01060at 1163.404 kb on - strand, within CCNA_01060at 1163.613 kb on - strand, within CCNA_01060at 1163.636 kb on + strand, within CCNA_01060at 1163.764 kb on - strand, within CCNA_01060at 1163.863 kb on + strand, within CCNA_01060at 1164.163 kb on + strand, within CCNA_01060at 1164.355 kb on + strand, within CCNA_01060at 1164.416 kb on + strand, within CCNA_01060at 1164.441 kb on + strand, within CCNA_01060at 1164.548 kb on + strand, within CCNA_01060at 1164.696 kb on - strandat 1164.696 kb on - strandat 1164.734 kb on + strandat 1164.773 kb on + strandat 1164.773 kb on + strandat 1164.892 kb on + strandat 1164.918 kb on - strandat 1164.944 kb on + strandat 1164.992 kb on + strand, within CCNA_01061at 1165.050 kb on + strand, within CCNA_01061at 1165.087 kb on + strand, within CCNA_01061at 1165.166 kb on + strand, within CCNA_01061at 1165.204 kb on - strand, within CCNA_01061at 1165.293 kb on - strand, within CCNA_01061at 1165.367 kb on + strand, within CCNA_01061at 1165.518 kb on + strand, within CCNA_01061at 1165.526 kb on - strand, within CCNA_01061at 1165.559 kb on - strand, within CCNA_01061at 1165.559 kb on - strand, within CCNA_01061at 1165.705 kb on + strand, within CCNA_01061at 1165.713 kb on - strand, within CCNA_01061

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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1,162,257 + CCNA_01059 0.83 +0.2
1,162,359 + CCNA_01059 0.87 +1.1
1,162,359 + CCNA_01059 0.87 +0.5
1,162,382 + CCNA_01059 0.87 +0.8
1,162,796 + +0.7
1,162,888 - -0.8
1,162,981 - +2.3
1,163,057 + +3.9
1,163,087 - +3.4
1,163,265 - CCNA_01060 0.14 +3.3
1,163,315 + CCNA_01060 0.17 +4.1
1,163,396 + CCNA_01060 0.22 +4.2
1,163,404 - CCNA_01060 0.22 +4.1
1,163,613 - CCNA_01060 0.34 +2.8
1,163,636 + CCNA_01060 0.36 +5.0
1,163,764 - CCNA_01060 0.43 +5.2
1,163,863 + CCNA_01060 0.49 +4.4
1,164,163 + CCNA_01060 0.66 +6.3
1,164,355 + CCNA_01060 0.77 +5.6
1,164,416 + CCNA_01060 0.81 +1.9
1,164,441 + CCNA_01060 0.82 +4.1
1,164,548 + CCNA_01060 0.88 +4.2
1,164,696 - +4.7
1,164,696 - +1.7
1,164,734 + -0.1
1,164,773 + +0.2
1,164,773 + +1.3
1,164,892 + +4.1
1,164,918 - +2.5
1,164,944 + +5.2
1,164,992 + CCNA_01061 0.13 +4.5
1,165,050 + CCNA_01061 0.18 +3.8
1,165,087 + CCNA_01061 0.20 +4.3
1,165,166 + CCNA_01061 0.26 +4.6
1,165,204 - CCNA_01061 0.29 +2.0
1,165,293 - CCNA_01061 0.36 +0.8
1,165,367 + CCNA_01061 0.42 +4.6
1,165,518 + CCNA_01061 0.53 +4.5
1,165,526 - CCNA_01061 0.54 +2.8
1,165,559 - CCNA_01061 0.56 +3.0
1,165,559 - CCNA_01061 0.56 +0.6
1,165,705 + CCNA_01061 0.68 +3.5
1,165,713 - CCNA_01061 0.68 +1.0

Or see this region's nucleotide sequence