Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00346

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00345 and CCNA_00346 are separated by 242 nucleotidesCCNA_00346 and CCNA_00347 are separated by 89 nucleotidesCCNA_00347 and CCNA_00348 are separated by 129 nucleotides CCNA_00345: CCNA_00345 - alpha/beta family hydrolase, at 359,343 to 360,176 _00345 CCNA_00346: CCNA_00346 - dihydrolipoamide dehydrogenase, at 360,419 to 361,819 _00346 CCNA_00347: CCNA_00347 - hypothetical protein, at 361,909 to 362,088 _00347 CCNA_00348: CCNA_00348 - methyl-accepting chemotaxis protein, at 362,218 to 364,221 _00348 Position (kb) 360 361 362Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 359.434 kb on + strand, within CCNA_00345at 359.445 kb on + strand, within CCNA_00345at 359.475 kb on - strand, within CCNA_00345at 359.487 kb on - strand, within CCNA_00345at 359.497 kb on + strand, within CCNA_00345at 359.499 kb on + strand, within CCNA_00345at 359.505 kb on - strand, within CCNA_00345at 359.507 kb on - strand, within CCNA_00345at 359.530 kb on + strand, within CCNA_00345at 359.538 kb on - strand, within CCNA_00345at 359.542 kb on - strand, within CCNA_00345at 359.558 kb on - strand, within CCNA_00345at 359.608 kb on + strand, within CCNA_00345at 359.612 kb on + strandat 359.618 kb on + strand, within CCNA_00345at 359.618 kb on + strand, within CCNA_00345at 359.626 kb on - strand, within CCNA_00345at 359.689 kb on - strand, within CCNA_00345at 359.697 kb on + strand, within CCNA_00345at 359.718 kb on + strand, within CCNA_00345at 359.741 kb on - strand, within CCNA_00345at 359.752 kb on + strand, within CCNA_00345at 359.754 kb on - strand, within CCNA_00345at 359.760 kb on - strand, within CCNA_00345at 359.760 kb on - strand, within CCNA_00345at 359.760 kb on - strand, within CCNA_00345at 359.760 kb on - strand, within CCNA_00345at 359.796 kb on + strand, within CCNA_00345at 359.801 kb on + strand, within CCNA_00345at 359.804 kb on - strand, within CCNA_00345at 359.820 kb on + strand, within CCNA_00345at 359.827 kb on - strand, within CCNA_00345at 359.833 kb on + strand, within CCNA_00345at 359.833 kb on + strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.841 kb on - strand, within CCNA_00345at 359.844 kb on + strand, within CCNA_00345at 359.877 kb on - strand, within CCNA_00345at 359.901 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.902 kb on + strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.910 kb on - strand, within CCNA_00345at 359.922 kb on - strand, within CCNA_00345at 359.981 kb on + strandat 359.981 kb on + strand, within CCNA_00345at 359.984 kb on - strand, within CCNA_00345at 359.984 kb on - strand, within CCNA_00345at 359.991 kb on + strand, within CCNA_00345at 359.999 kb on - strand, within CCNA_00345at 359.999 kb on - strand, within CCNA_00345at 359.999 kb on - strand, within CCNA_00345at 360.037 kb on + strand, within CCNA_00345at 360.063 kb on + strand, within CCNA_00345at 360.063 kb on - strand, within CCNA_00345at 360.063 kb on - strand, within CCNA_00345at 360.071 kb on - strand, within CCNA_00345at 360.123 kb on - strandat 360.148 kb on + strandat 360.161 kb on - strandat 360.161 kb on - strandat 360.161 kb on - strandat 360.161 kb on - strandat 360.166 kb on + strandat 360.166 kb on - strandat 360.178 kb on + strandat 360.178 kb on + strandat 360.185 kb on + strandat 360.198 kb on - strandat 360.206 kb on - strandat 360.207 kb on + strandat 360.207 kb on + strandat 360.215 kb on - strandat 360.226 kb on + strandat 360.231 kb on + strandat 360.239 kb on - strandat 360.255 kb on - strandat 360.336 kb on + strandat 361.827 kb on - strandat 361.865 kb on - strandat 361.991 kb on - strand, within CCNA_00347at 362.006 kb on + strand, within CCNA_00347at 362.008 kb on - strand, within CCNA_00347at 362.010 kb on - strand, within CCNA_00347at 362.096 kb on + strandat 362.179 kb on + strandat 362.196 kb on + strandat 362.204 kb on - strandat 362.258 kb on + strandat 362.258 kb on + strandat 362.267 kb on + strandat 362.328 kb on - strandat 362.437 kb on + strand, within CCNA_00348at 362.544 kb on - strand, within CCNA_00348at 362.546 kb on + strand, within CCNA_00348at 362.554 kb on - strand, within CCNA_00348at 362.577 kb on - strand, within CCNA_00348at 362.577 kb on - strand, within CCNA_00348at 362.601 kb on - strand, within CCNA_00348at 362.662 kb on + strand, within CCNA_00348at 362.730 kb on + strand, within CCNA_00348at 362.738 kb on + strand, within CCNA_00348at 362.746 kb on - strand, within CCNA_00348at 362.746 kb on - strand, within CCNA_00348at 362.770 kb on - strand, within CCNA_00348at 362.787 kb on - strand, within CCNA_00348at 362.787 kb on - strand, within CCNA_00348at 362.787 kb on - strand, within CCNA_00348at 362.787 kb on - strand, within CCNA_00348

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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359,434 + CCNA_00345 0.11 +1.3
359,445 + CCNA_00345 0.12 -0.1
359,475 - CCNA_00345 0.16 -2.4
359,487 - CCNA_00345 0.17 -1.4
359,497 + CCNA_00345 0.18 +0.8
359,499 + CCNA_00345 0.19 -0.5
359,505 - CCNA_00345 0.19 +0.8
359,507 - CCNA_00345 0.20 +0.2
359,530 + CCNA_00345 0.22 +0.2
359,538 - CCNA_00345 0.23 -0.3
359,542 - CCNA_00345 0.24 -1.6
359,558 - CCNA_00345 0.26 -0.4
359,608 + CCNA_00345 0.32 +0.2
359,612 + +1.1
359,618 + CCNA_00345 0.33 +1.3
359,618 + CCNA_00345 0.33 -0.5
359,626 - CCNA_00345 0.34 +0.6
359,689 - CCNA_00345 0.41 +0.1
359,697 + CCNA_00345 0.42 -0.0
359,718 + CCNA_00345 0.45 +0.4
359,741 - CCNA_00345 0.48 -2.2
359,752 + CCNA_00345 0.49 -0.2
359,754 - CCNA_00345 0.49 -0.0
359,760 - CCNA_00345 0.50 -0.5
359,760 - CCNA_00345 0.50 -0.5
359,760 - CCNA_00345 0.50 +0.2
359,760 - CCNA_00345 0.50 -0.6
359,796 + CCNA_00345 0.54 +0.0
359,801 + CCNA_00345 0.55 -0.8
359,804 - CCNA_00345 0.55 +1.6
359,820 + CCNA_00345 0.57 +0.7
359,827 - CCNA_00345 0.58 -1.1
359,833 + CCNA_00345 0.59 -2.2
359,833 + CCNA_00345 0.59 -0.9
359,841 - CCNA_00345 0.60 +2.4
359,841 - CCNA_00345 0.60 +1.4
359,841 - CCNA_00345 0.60 -0.3
359,841 - CCNA_00345 0.60 +2.8
359,841 - CCNA_00345 0.60 -1.1
359,844 + CCNA_00345 0.60 -1.0
359,877 - CCNA_00345 0.64 +0.1
359,901 + CCNA_00345 0.67 -1.5
359,902 + CCNA_00345 0.67 -0.9
359,902 + CCNA_00345 0.67 -1.3
359,902 + CCNA_00345 0.67 +0.8
359,902 + CCNA_00345 0.67 -0.1
359,902 + CCNA_00345 0.67 -1.4
359,902 + CCNA_00345 0.67 -2.0
359,902 + CCNA_00345 0.67 -0.7
359,902 + CCNA_00345 0.67 -1.3
359,902 + CCNA_00345 0.67 +1.8
359,902 + CCNA_00345 0.67 -1.2
359,902 + CCNA_00345 0.67 +0.2
359,910 - CCNA_00345 0.68 +0.2
359,910 - CCNA_00345 0.68 -2.4
359,910 - CCNA_00345 0.68 +0.6
359,910 - CCNA_00345 0.68 +0.2
359,910 - CCNA_00345 0.68 -0.2
359,910 - CCNA_00345 0.68 -0.6
359,910 - CCNA_00345 0.68 +1.8
359,910 - CCNA_00345 0.68 +1.6
359,910 - CCNA_00345 0.68 +0.7
359,910 - CCNA_00345 0.68 -1.1
359,910 - CCNA_00345 0.68 -0.5
359,910 - CCNA_00345 0.68 +0.4
359,922 - CCNA_00345 0.69 -2.6
359,981 + +3.8
359,981 + CCNA_00345 0.76 -0.6
359,984 - CCNA_00345 0.77 -0.4
359,984 - CCNA_00345 0.77 +0.5
359,991 + CCNA_00345 0.78 -1.4
359,999 - CCNA_00345 0.79 -0.7
359,999 - CCNA_00345 0.79 -1.3
359,999 - CCNA_00345 0.79 -1.2
360,037 + CCNA_00345 0.83 -0.6
360,063 + CCNA_00345 0.86 -1.1
360,063 - CCNA_00345 0.86 +0.9
360,063 - CCNA_00345 0.86 +0.4
360,071 - CCNA_00345 0.87 +0.8
360,123 - -1.0
360,148 + +1.1
360,161 - -0.9
360,161 - +0.1
360,161 - +1.1
360,161 - +1.8
360,166 + -0.7
360,166 - +0.8
360,178 + +1.6
360,178 + +1.5
360,185 + -1.2
360,198 - -1.1
360,206 - -0.2
360,207 + -0.2
360,207 + +0.8
360,215 - -0.7
360,226 + -0.2
360,231 + -1.1
360,239 - +1.4
360,255 - +0.8
360,336 + +0.8
361,827 - +1.7
361,865 - +1.1
361,991 - CCNA_00347 0.46 +0.6
362,006 + CCNA_00347 0.54 +0.1
362,008 - CCNA_00347 0.55 +0.5
362,010 - CCNA_00347 0.56 +0.7
362,096 + -0.3
362,179 + +0.3
362,196 + +0.2
362,204 - -0.1
362,258 + +0.5
362,258 + -2.2
362,267 + +1.4
362,328 - -0.0
362,437 + CCNA_00348 0.11 -0.2
362,544 - CCNA_00348 0.16 -0.3
362,546 + CCNA_00348 0.16 +0.2
362,554 - CCNA_00348 0.17 -0.2
362,577 - CCNA_00348 0.18 +2.4
362,577 - CCNA_00348 0.18 +0.2
362,601 - CCNA_00348 0.19 +0.0
362,662 + CCNA_00348 0.22 -0.4
362,730 + CCNA_00348 0.26 +0.0
362,738 + CCNA_00348 0.26 -0.6
362,746 - CCNA_00348 0.26 +2.4
362,746 - CCNA_00348 0.26 -0.4
362,770 - CCNA_00348 0.28 +0.4
362,787 - CCNA_00348 0.28 +0.2
362,787 - CCNA_00348 0.28 +0.7
362,787 - CCNA_00348 0.28 +0.8
362,787 - CCNA_00348 0.28 +0.3

Or see this region's nucleotide sequence