Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00332

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00330 and CCNA_00331 are separated by 71 nucleotidesCCNA_00331 and CCNA_00332 are separated by 2 nucleotidesCCNA_00332 and CCNA_00333 are separated by 20 nucleotidesCCNA_00333 and CCNA_00334 are separated by 62 nucleotides CCNA_00330: CCNA_00330 - molybdenum-pterin binding protein mopB, at 341,832 to 342,602 _00330 CCNA_00331: CCNA_00331 - molybdate-binding protein, at 342,674 to 343,432 _00331 CCNA_00332: CCNA_00332 - molybdenum transport system permease protein modB, at 343,435 to 344,109 _00332 CCNA_00333: CCNA_00333 - LytTr DNA-binding domain protein, at 344,130 to 344,957 _00333 CCNA_00334: CCNA_00334 - hypothetical protein, at 345,020 to 345,580 _00334 Position (kb) 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 342.489 kb on + strand, within CCNA_00330at 342.489 kb on + strand, within CCNA_00330at 342.489 kb on + strand, within CCNA_00330at 342.497 kb on - strand, within CCNA_00330at 342.511 kb on + strand, within CCNA_00330at 342.511 kb on + strand, within CCNA_00330at 342.536 kb on + strandat 342.538 kb on - strandat 342.567 kb on + strandat 342.577 kb on - strandat 342.585 kb on - strandat 342.605 kb on - strandat 342.605 kb on - strandat 342.617 kb on - strandat 342.649 kb on - strandat 342.658 kb on + strandat 342.658 kb on + strandat 342.665 kb on + strandat 342.666 kb on - strandat 342.666 kb on - strandat 342.703 kb on + strandat 342.743 kb on + strandat 342.743 kb on + strandat 342.743 kb on + strandat 342.743 kb on + strandat 342.743 kb on + strandat 342.751 kb on - strand, within CCNA_00331at 342.756 kb on + strand, within CCNA_00331at 342.764 kb on - strand, within CCNA_00331at 342.770 kb on - strand, within CCNA_00331at 342.814 kb on + strand, within CCNA_00331at 342.814 kb on + strand, within CCNA_00331at 342.820 kb on + strand, within CCNA_00331at 342.820 kb on + strand, within CCNA_00331at 342.820 kb on + strand, within CCNA_00331at 342.828 kb on - strand, within CCNA_00331at 342.849 kb on + strand, within CCNA_00331at 342.868 kb on + strand, within CCNA_00331at 342.868 kb on + strand, within CCNA_00331at 342.876 kb on - strandat 342.876 kb on - strand, within CCNA_00331at 342.876 kb on - strand, within CCNA_00331at 342.876 kb on - strand, within CCNA_00331at 342.876 kb on - strand, within CCNA_00331at 342.876 kb on - strand, within CCNA_00331at 342.953 kb on + strand, within CCNA_00331at 342.987 kb on + strand, within CCNA_00331at 342.996 kb on + strand, within CCNA_00331at 343.004 kb on - strand, within CCNA_00331at 343.011 kb on + strand, within CCNA_00331at 343.046 kb on + strand, within CCNA_00331at 343.046 kb on + strand, within CCNA_00331at 343.046 kb on + strand, within CCNA_00331at 343.075 kb on + strand, within CCNA_00331at 343.087 kb on + strandat 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.108 kb on - strand, within CCNA_00331at 343.186 kb on + strand, within CCNA_00331at 343.187 kb on + strand, within CCNA_00331at 343.205 kb on + strand, within CCNA_00331at 343.205 kb on + strand, within CCNA_00331at 343.213 kb on - strand, within CCNA_00331at 343.213 kb on - strand, within CCNA_00331at 343.218 kb on + strand, within CCNA_00331at 343.223 kb on + strand, within CCNA_00331at 343.231 kb on - strand, within CCNA_00331at 343.236 kb on - strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.267 kb on - strand, within CCNA_00331at 343.286 kb on - strand, within CCNA_00331at 343.304 kb on - strand, within CCNA_00331at 343.317 kb on + strand, within CCNA_00331at 343.327 kb on + strand, within CCNA_00331at 343.327 kb on + strand, within CCNA_00331at 343.327 kb on + strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.364 kb on + strandat 343.364 kb on + strandat 343.372 kb on - strandat 343.431 kb on + strandat 343.434 kb on - strandat 343.439 kb on - strandat 343.444 kb on + strandat 343.486 kb on - strandat 343.502 kb on - strandat 343.507 kb on + strand, within CCNA_00332at 343.512 kb on + strand, within CCNA_00332at 343.512 kb on + strand, within CCNA_00332at 343.520 kb on - strand, within CCNA_00332at 343.548 kb on - strand, within CCNA_00332at 343.570 kb on + strand, within CCNA_00332at 343.589 kb on - strand, within CCNA_00332at 343.602 kb on + strand, within CCNA_00332at 343.610 kb on - strand, within CCNA_00332at 343.627 kb on + strand, within CCNA_00332at 343.627 kb on + strand, within CCNA_00332at 343.635 kb on - strandat 343.635 kb on - strand, within CCNA_00332at 343.635 kb on - strand, within CCNA_00332at 343.649 kb on - strand, within CCNA_00332at 343.675 kb on + strand, within CCNA_00332at 343.675 kb on + strand, within CCNA_00332at 343.689 kb on - strand, within CCNA_00332at 343.716 kb on + strand, within CCNA_00332at 343.724 kb on - strand, within CCNA_00332at 343.741 kb on - strand, within CCNA_00332at 343.762 kb on - strand, within CCNA_00332at 343.808 kb on - strand, within CCNA_00332at 343.832 kb on - strand, within CCNA_00332at 343.876 kb on + strand, within CCNA_00332at 343.887 kb on + strand, within CCNA_00332at 343.905 kb on + strand, within CCNA_00332at 343.934 kb on - strand, within CCNA_00332at 343.937 kb on + strand, within CCNA_00332at 343.949 kb on + strand, within CCNA_00332at 343.956 kb on + strand, within CCNA_00332at 343.956 kb on + strand, within CCNA_00332at 343.987 kb on + strand, within CCNA_00332at 343.998 kb on + strand, within CCNA_00332at 344.032 kb on + strand, within CCNA_00332at 344.034 kb on - strand, within CCNA_00332at 344.074 kb on - strandat 344.148 kb on + strandat 344.163 kb on - strandat 344.172 kb on + strandat 344.189 kb on - strandat 344.202 kb on - strandat 344.210 kb on - strandat 344.250 kb on + strand, within CCNA_00333at 344.260 kb on + strand, within CCNA_00333at 344.301 kb on - strandat 344.344 kb on - strand, within CCNA_00333at 344.361 kb on - strand, within CCNA_00333at 344.363 kb on - strand, within CCNA_00333at 344.366 kb on + strand, within CCNA_00333at 344.373 kb on + strand, within CCNA_00333at 344.374 kb on - strand, within CCNA_00333at 344.394 kb on + strand, within CCNA_00333at 344.454 kb on + strand, within CCNA_00333at 344.472 kb on - strand, within CCNA_00333at 344.472 kb on - strand, within CCNA_00333at 344.497 kb on - strand, within CCNA_00333at 344.507 kb on - strand, within CCNA_00333at 344.539 kb on + strand, within CCNA_00333at 344.545 kb on - strand, within CCNA_00333at 344.599 kb on + strand, within CCNA_00333at 344.627 kb on - strand, within CCNA_00333at 344.627 kb on - strand, within CCNA_00333at 344.633 kb on - strand, within CCNA_00333at 344.650 kb on + strand, within CCNA_00333at 344.650 kb on + strand, within CCNA_00333at 344.656 kb on + strand, within CCNA_00333at 344.656 kb on + strand, within CCNA_00333at 344.658 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.674 kb on + strand, within CCNA_00333at 344.708 kb on - strand, within CCNA_00333at 344.738 kb on + strand, within CCNA_00333at 344.746 kb on + strand, within CCNA_00333at 344.746 kb on - strand, within CCNA_00333at 344.791 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.859 kb on + strand, within CCNA_00333at 344.859 kb on + strand, within CCNA_00333at 344.955 kb on - strandat 344.955 kb on - strandat 344.967 kb on - strandat 344.968 kb on - strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.069 kb on - strandat 345.081 kb on - strand, within CCNA_00334at 345.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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342,489 + CCNA_00330 0.85 -1.8
342,489 + CCNA_00330 0.85 -1.1
342,489 + CCNA_00330 0.85 -1.5
342,497 - CCNA_00330 0.86 +0.2
342,511 + CCNA_00330 0.88 -0.9
342,511 + CCNA_00330 0.88 -2.0
342,536 + +1.4
342,538 - -0.9
342,567 + +0.2
342,577 - +1.2
342,585 - -0.4
342,605 - -0.8
342,605 - -0.4
342,617 - -1.6
342,649 - -1.1
342,658 + +0.7
342,658 + -1.2
342,665 + -1.2
342,666 - -1.9
342,666 - -0.5
342,703 + -2.8
342,743 + -1.0
342,743 + -0.1
342,743 + -0.7
342,743 + -0.8
342,743 + -1.5
342,751 - CCNA_00331 0.10 +2.1
342,756 + CCNA_00331 0.11 +0.8
342,764 - CCNA_00331 0.12 -0.7
342,770 - CCNA_00331 0.13 -2.0
342,814 + CCNA_00331 0.18 -0.8
342,814 + CCNA_00331 0.18 -1.5
342,820 + CCNA_00331 0.19 -0.3
342,820 + CCNA_00331 0.19 -2.5
342,820 + CCNA_00331 0.19 -0.1
342,828 - CCNA_00331 0.20 -2.0
342,849 + CCNA_00331 0.23 -1.4
342,868 + CCNA_00331 0.26 -1.9
342,868 + CCNA_00331 0.26 -2.2
342,876 - +0.6
342,876 - CCNA_00331 0.27 +0.4
342,876 - CCNA_00331 0.27 -0.3
342,876 - CCNA_00331 0.27 -1.9
342,876 - CCNA_00331 0.27 -2.0
342,876 - CCNA_00331 0.27 -1.9
342,953 + CCNA_00331 0.37 -2.0
342,987 + CCNA_00331 0.41 +0.5
342,996 + CCNA_00331 0.42 -0.8
343,004 - CCNA_00331 0.43 -1.7
343,011 + CCNA_00331 0.44 -1.1
343,046 + CCNA_00331 0.49 +0.8
343,046 + CCNA_00331 0.49 -2.2
343,046 + CCNA_00331 0.49 +0.2
343,075 + CCNA_00331 0.53 -1.6
343,087 + +0.6
343,087 + CCNA_00331 0.54 -1.2
343,087 + CCNA_00331 0.54 -1.5
343,087 + CCNA_00331 0.54 -2.4
343,087 + CCNA_00331 0.54 -2.0
343,087 + CCNA_00331 0.54 -2.7
343,087 + CCNA_00331 0.54 -0.4
343,095 - CCNA_00331 0.55 -0.1
343,095 - CCNA_00331 0.55 -1.0
343,095 - CCNA_00331 0.55 +0.5
343,095 - CCNA_00331 0.55 +0.2
343,095 - CCNA_00331 0.55 -0.1
343,095 - CCNA_00331 0.55 -1.2
343,095 - CCNA_00331 0.55 -1.8
343,108 - CCNA_00331 0.57 -3.0
343,186 + CCNA_00331 0.67 -1.8
343,187 + CCNA_00331 0.68 -1.9
343,205 + CCNA_00331 0.70 -2.0
343,205 + CCNA_00331 0.70 +0.9
343,213 - CCNA_00331 0.71 -1.2
343,213 - CCNA_00331 0.71 -1.4
343,218 + CCNA_00331 0.72 -3.2
343,223 + CCNA_00331 0.72 -1.1
343,231 - CCNA_00331 0.73 +0.5
343,236 - CCNA_00331 0.74 -0.3
343,243 + CCNA_00331 0.75 -2.5
343,243 + CCNA_00331 0.75 +0.2
343,243 + CCNA_00331 0.75 -2.2
343,243 + CCNA_00331 0.75 -0.6
343,243 + CCNA_00331 0.75 -2.8
343,243 + CCNA_00331 0.75 -1.8
343,243 + CCNA_00331 0.75 -3.1
343,243 + CCNA_00331 0.75 -1.4
343,243 + CCNA_00331 0.75 -1.2
343,243 + CCNA_00331 0.75 -2.5
343,243 + CCNA_00331 0.75 -1.9
343,243 + CCNA_00331 0.75 -1.3
343,243 + CCNA_00331 0.75 -2.2
343,243 + CCNA_00331 0.75 -0.8
343,243 + CCNA_00331 0.75 -1.1
343,251 - CCNA_00331 0.76 -0.7
343,251 - CCNA_00331 0.76 -2.5
343,251 - CCNA_00331 0.76 -0.9
343,251 - CCNA_00331 0.76 -1.4
343,267 - CCNA_00331 0.78 -0.6
343,286 - CCNA_00331 0.81 -2.5
343,304 - CCNA_00331 0.83 -0.4
343,317 + CCNA_00331 0.85 -1.9
343,327 + CCNA_00331 0.86 -1.3
343,327 + CCNA_00331 0.86 -2.0
343,327 + CCNA_00331 0.86 -2.4
343,335 - CCNA_00331 0.87 -1.0
343,335 - CCNA_00331 0.87 -0.8
343,335 - CCNA_00331 0.87 -1.1
343,335 - CCNA_00331 0.87 -1.4
343,364 + -0.9
343,364 + -1.2
343,372 - -0.5
343,431 + +0.5
343,434 - -1.4
343,439 - +0.3
343,444 + -2.0
343,486 - -2.1
343,502 - -0.2
343,507 + CCNA_00332 0.11 +0.1
343,512 + CCNA_00332 0.11 +0.8
343,512 + CCNA_00332 0.11 -0.8
343,520 - CCNA_00332 0.13 -0.2
343,548 - CCNA_00332 0.17 +0.6
343,570 + CCNA_00332 0.20 -1.4
343,589 - CCNA_00332 0.23 +1.2
343,602 + CCNA_00332 0.25 -1.1
343,610 - CCNA_00332 0.26 -0.8
343,627 + CCNA_00332 0.28 -1.0
343,627 + CCNA_00332 0.28 +0.1
343,635 - +1.8
343,635 - CCNA_00332 0.30 -1.3
343,635 - CCNA_00332 0.30 -1.4
343,649 - CCNA_00332 0.32 -0.1
343,675 + CCNA_00332 0.36 -0.2
343,675 + CCNA_00332 0.36 -1.2
343,689 - CCNA_00332 0.38 -0.4
343,716 + CCNA_00332 0.42 -2.1
343,724 - CCNA_00332 0.43 -0.0
343,741 - CCNA_00332 0.45 +0.4
343,762 - CCNA_00332 0.48 -0.8
343,808 - CCNA_00332 0.55 -0.7
343,832 - CCNA_00332 0.59 -0.6
343,876 + CCNA_00332 0.65 -0.4
343,887 + CCNA_00332 0.67 -1.7
343,905 + CCNA_00332 0.70 -2.1
343,934 - CCNA_00332 0.74 -1.7
343,937 + CCNA_00332 0.74 -0.4
343,949 + CCNA_00332 0.76 +1.1
343,956 + CCNA_00332 0.77 -0.8
343,956 + CCNA_00332 0.77 -0.9
343,987 + CCNA_00332 0.82 -2.0
343,998 + CCNA_00332 0.83 -3.3
344,032 + CCNA_00332 0.88 -0.9
344,034 - CCNA_00332 0.89 -2.3
344,074 - -0.5
344,148 + -1.7
344,163 - +1.0
344,172 + -0.9
344,189 - -0.5
344,202 - +0.6
344,210 - -0.4
344,250 + CCNA_00333 0.14 +0.2
344,260 + CCNA_00333 0.16 -0.1
344,301 - +2.4
344,344 - CCNA_00333 0.26 +1.7
344,361 - CCNA_00333 0.28 -0.6
344,363 - CCNA_00333 0.28 +0.4
344,366 + CCNA_00333 0.29 -1.2
344,373 + CCNA_00333 0.29 +0.5
344,374 - CCNA_00333 0.29 -0.4
344,394 + CCNA_00333 0.32 -0.1
344,454 + CCNA_00333 0.39 -0.1
344,472 - CCNA_00333 0.41 +0.4
344,472 - CCNA_00333 0.41 +0.8
344,497 - CCNA_00333 0.44 +0.5
344,507 - CCNA_00333 0.46 +2.7
344,539 + CCNA_00333 0.49 -1.5
344,545 - CCNA_00333 0.50 +0.3
344,599 + CCNA_00333 0.57 -0.0
344,627 - CCNA_00333 0.60 -0.9
344,627 - CCNA_00333 0.60 -1.1
344,633 - CCNA_00333 0.61 +0.8
344,650 + CCNA_00333 0.63 -0.9
344,650 + CCNA_00333 0.63 -1.2
344,656 + CCNA_00333 0.64 -1.5
344,656 + CCNA_00333 0.64 +1.4
344,658 - CCNA_00333 0.64 +2.4
344,664 - CCNA_00333 0.64 -0.4
344,664 - CCNA_00333 0.64 +0.3
344,664 - CCNA_00333 0.64 +3.3
344,674 + CCNA_00333 0.66 -1.9
344,708 - CCNA_00333 0.70 +0.8
344,738 + CCNA_00333 0.73 -1.6
344,746 + CCNA_00333 0.74 -0.1
344,746 - CCNA_00333 0.74 -0.3
344,791 + CCNA_00333 0.80 -0.0
344,838 + CCNA_00333 0.86 -1.0
344,838 + CCNA_00333 0.86 -1.5
344,838 + CCNA_00333 0.86 -0.7
344,859 + CCNA_00333 0.88 +1.9
344,859 + CCNA_00333 0.88 +0.3
344,955 - +0.9
344,955 - -1.7
344,967 - -0.3
344,968 - -0.0
345,010 - +0.2
345,010 - -1.0
345,010 - -0.4
345,069 - -1.4
345,081 - CCNA_00334 0.11 +0.5
345,081 - +0.8

Or see this region's nucleotide sequence