Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00014

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00013 and CCNA_00014 overlap by 4 nucleotidesCCNA_00014 and CCNA_00015 overlap by 4 nucleotidesCCNA_00015 and CCNA_00016 are separated by 0 nucleotidesCCNA_00016 and CCNA_00017 overlap by 4 nucleotides CCNA_00013: CCNA_00013 - protein-PII uridylyltransferase, at 14,199 to 17,021 _00013 CCNA_00014: CCNA_00014 - molybdenum cofactor biosynthesis protein C, at 17,018 to 17,494 _00014 CCNA_00015: CCNA_00015 - molybdenum cofactor biosynthesis protein B, at 17,491 to 18,042 _00015 CCNA_00016: CCNA_00016 - molybdopterin converting factor, large subunit, at 18,043 to 18,495 _00016 CCNA_00017: CCNA_00017 - molybdopterin converting factor, small subunit, at 18,492 to 18,731 _00017 Position (kb) 17 18Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 16.039 kb on - strand, within CCNA_00013at 16.063 kb on - strand, within CCNA_00013at 16.081 kb on - strand, within CCNA_00013at 16.087 kb on + strand, within CCNA_00013at 16.095 kb on - strand, within CCNA_00013at 16.141 kb on - strand, within CCNA_00013at 16.246 kb on - strand, within CCNA_00013at 16.281 kb on + strand, within CCNA_00013at 16.336 kb on - strand, within CCNA_00013at 16.420 kb on - strand, within CCNA_00013at 16.492 kb on + strand, within CCNA_00013at 16.492 kb on + strand, within CCNA_00013at 16.500 kb on - strand, within CCNA_00013at 16.500 kb on - strand, within CCNA_00013at 16.510 kb on - strand, within CCNA_00013at 16.571 kb on - strand, within CCNA_00013at 16.660 kb on + strand, within CCNA_00013at 16.660 kb on + strand, within CCNA_00013at 16.668 kb on - strand, within CCNA_00013at 16.668 kb on - strand, within CCNA_00013at 16.757 kb on - strandat 16.787 kb on + strandat 16.787 kb on + strandat 16.787 kb on + strandat 16.787 kb on + strandat 16.787 kb on + strandat 16.795 kb on - strandat 16.795 kb on - strandat 16.872 kb on - strandat 16.922 kb on + strandat 16.955 kb on + strandat 16.964 kb on - strandat 16.994 kb on - strandat 17.011 kb on - strandat 17.016 kb on + strandat 17.016 kb on + strandat 17.024 kb on - strandat 17.087 kb on - strand, within CCNA_00014at 17.106 kb on + strand, within CCNA_00014at 17.114 kb on - strand, within CCNA_00014at 17.114 kb on - strand, within CCNA_00014at 17.117 kb on + strand, within CCNA_00014at 17.143 kb on - strand, within CCNA_00014at 17.187 kb on + strand, within CCNA_00014at 17.187 kb on + strand, within CCNA_00014at 17.187 kb on + strand, within CCNA_00014at 17.187 kb on + strand, within CCNA_00014at 17.195 kb on - strand, within CCNA_00014at 17.195 kb on - strand, within CCNA_00014at 17.195 kb on - strand, within CCNA_00014at 17.195 kb on - strand, within CCNA_00014at 17.195 kb on - strandat 17.244 kb on + strand, within CCNA_00014at 17.244 kb on + strand, within CCNA_00014at 17.244 kb on + strand, within CCNA_00014at 17.244 kb on + strand, within CCNA_00014at 17.244 kb on + strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.252 kb on - strand, within CCNA_00014at 17.263 kb on - strand, within CCNA_00014at 17.270 kb on - strand, within CCNA_00014at 17.281 kb on + strand, within CCNA_00014at 17.289 kb on - strand, within CCNA_00014at 17.328 kb on + strand, within CCNA_00014at 17.377 kb on - strand, within CCNA_00014at 17.413 kb on + strand, within CCNA_00014at 17.424 kb on + strand, within CCNA_00014at 17.449 kb on - strandat 17.462 kb on + strandat 17.525 kb on + strandat 17.567 kb on + strand, within CCNA_00015at 17.569 kb on - strand, within CCNA_00015at 17.580 kb on - strand, within CCNA_00015at 17.584 kb on - strand, within CCNA_00015at 17.694 kb on + strand, within CCNA_00015at 17.760 kb on + strand, within CCNA_00015at 17.760 kb on + strand, within CCNA_00015at 17.830 kb on - strand, within CCNA_00015at 17.840 kb on + strand, within CCNA_00015at 17.840 kb on + strand, within CCNA_00015at 17.843 kb on - strand, within CCNA_00015at 17.848 kb on - strand, within CCNA_00015at 17.848 kb on - strand, within CCNA_00015at 17.848 kb on - strand, within CCNA_00015at 17.886 kb on + strand, within CCNA_00015at 17.886 kb on + strand, within CCNA_00015at 17.886 kb on + strand, within CCNA_00015at 17.900 kb on + strand, within CCNA_00015at 17.900 kb on + strand, within CCNA_00015at 17.908 kb on - strand, within CCNA_00015at 17.908 kb on - strand, within CCNA_00015at 17.908 kb on - strand, within CCNA_00015at 17.923 kb on - strand, within CCNA_00015at 17.923 kb on - strand, within CCNA_00015at 17.923 kb on - strand, within CCNA_00015at 17.931 kb on + strand, within CCNA_00015at 17.966 kb on - strand, within CCNA_00015at 17.973 kb on - strand, within CCNA_00015at 17.981 kb on - strand, within CCNA_00015at 17.987 kb on + strandat 17.987 kb on + strandat 17.995 kb on - strandat 18.000 kb on + strandat 18.009 kb on - strandat 18.013 kb on - strandat 18.023 kb on + strandat 18.031 kb on - strandat 18.048 kb on - strandat 18.059 kb on - strandat 18.082 kb on - strandat 18.082 kb on - strandat 18.087 kb on - strandat 18.101 kb on - strand, within CCNA_00016at 18.110 kb on - strand, within CCNA_00016at 18.148 kb on + strand, within CCNA_00016at 18.148 kb on + strand, within CCNA_00016at 18.150 kb on + strand, within CCNA_00016at 18.150 kb on + strand, within CCNA_00016at 18.178 kb on + strand, within CCNA_00016at 18.188 kb on - strand, within CCNA_00016at 18.290 kb on - strand, within CCNA_00016at 18.367 kb on + strand, within CCNA_00016at 18.378 kb on + strand, within CCNA_00016at 18.381 kb on - strand, within CCNA_00016at 18.383 kb on + strand, within CCNA_00016at 18.443 kb on + strand, within CCNA_00016at 18.461 kb on + strandat 18.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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16,039 - CCNA_00013 0.65 -1.0
16,063 - CCNA_00013 0.66 -0.1
16,081 - CCNA_00013 0.67 -0.7
16,087 + CCNA_00013 0.67 +2.4
16,095 - CCNA_00013 0.67 +3.6
16,141 - CCNA_00013 0.69 -1.0
16,246 - CCNA_00013 0.73 -0.9
16,281 + CCNA_00013 0.74 -0.5
16,336 - CCNA_00013 0.76 +0.6
16,420 - CCNA_00013 0.79 +0.3
16,492 + CCNA_00013 0.81 -0.9
16,492 + CCNA_00013 0.81 -0.3
16,500 - CCNA_00013 0.82 -0.9
16,500 - CCNA_00013 0.82 +0.8
16,510 - CCNA_00013 0.82 +0.9
16,571 - CCNA_00013 0.84 -0.0
16,660 + CCNA_00013 0.87 +0.7
16,660 + CCNA_00013 0.87 +0.3
16,668 - CCNA_00013 0.87 -0.1
16,668 - CCNA_00013 0.87 -0.1
16,757 - -1.1
16,787 + -0.1
16,787 + -0.4
16,787 + +0.9
16,787 + -0.5
16,787 + +1.1
16,795 - -1.1
16,795 - +0.7
16,872 - -1.0
16,922 + +1.7
16,955 + +2.0
16,964 - +1.1
16,994 - +3.7
17,011 - +1.7
17,016 + -0.9
17,016 + -0.3
17,024 - -0.4
17,087 - CCNA_00014 0.14 -0.6
17,106 + CCNA_00014 0.18 -1.1
17,114 - CCNA_00014 0.20 -2.9
17,114 - CCNA_00014 0.20 -0.8
17,117 + CCNA_00014 0.21 -0.8
17,143 - CCNA_00014 0.26 +0.4
17,187 + CCNA_00014 0.35 +2.4
17,187 + CCNA_00014 0.35 -1.1
17,187 + CCNA_00014 0.35 +0.6
17,187 + CCNA_00014 0.35 -2.9
17,195 - CCNA_00014 0.37 -2.3
17,195 - CCNA_00014 0.37 -1.2
17,195 - CCNA_00014 0.37 -3.8
17,195 - CCNA_00014 0.37 -2.0
17,195 - +1.4
17,244 + CCNA_00014 0.47 +0.1
17,244 + CCNA_00014 0.47 -0.9
17,244 + CCNA_00014 0.47 +0.2
17,244 + CCNA_00014 0.47 -0.4
17,244 + CCNA_00014 0.47 -0.1
17,252 - CCNA_00014 0.49 -1.2
17,252 - CCNA_00014 0.49 -0.7
17,252 - CCNA_00014 0.49 -0.8
17,252 - CCNA_00014 0.49 -0.9
17,252 - CCNA_00014 0.49 -0.7
17,252 - CCNA_00014 0.49 -1.8
17,252 - CCNA_00014 0.49 -3.3
17,252 - CCNA_00014 0.49 -2.0
17,252 - CCNA_00014 0.49 -0.7
17,252 - CCNA_00014 0.49 -1.6
17,263 - CCNA_00014 0.51 +0.2
17,270 - CCNA_00014 0.53 -0.9
17,281 + CCNA_00014 0.55 -1.1
17,289 - CCNA_00014 0.57 -2.2
17,328 + CCNA_00014 0.65 -1.5
17,377 - CCNA_00014 0.75 -3.0
17,413 + CCNA_00014 0.83 -2.1
17,424 + CCNA_00014 0.85 -2.6
17,449 - -2.6
17,462 + +1.1
17,525 + -1.1
17,567 + CCNA_00015 0.14 -0.0
17,569 - CCNA_00015 0.14 -2.8
17,580 - CCNA_00015 0.16 -0.4
17,584 - CCNA_00015 0.17 -1.7
17,694 + CCNA_00015 0.37 -1.0
17,760 + CCNA_00015 0.49 -0.1
17,760 + CCNA_00015 0.49 +0.1
17,830 - CCNA_00015 0.61 -1.1
17,840 + CCNA_00015 0.63 -2.4
17,840 + CCNA_00015 0.63 -1.6
17,843 - CCNA_00015 0.64 -3.3
17,848 - CCNA_00015 0.65 -2.5
17,848 - CCNA_00015 0.65 -2.5
17,848 - CCNA_00015 0.65 -2.7
17,886 + CCNA_00015 0.72 -0.8
17,886 + CCNA_00015 0.72 -1.4
17,886 + CCNA_00015 0.72 -0.4
17,900 + CCNA_00015 0.74 +0.2
17,900 + CCNA_00015 0.74 -1.1
17,908 - CCNA_00015 0.76 -1.8
17,908 - CCNA_00015 0.76 -2.3
17,908 - CCNA_00015 0.76 -1.8
17,923 - CCNA_00015 0.78 -2.0
17,923 - CCNA_00015 0.78 -0.8
17,923 - CCNA_00015 0.78 -2.1
17,931 + CCNA_00015 0.80 -3.5
17,966 - CCNA_00015 0.86 -2.0
17,973 - CCNA_00015 0.87 -1.8
17,981 - CCNA_00015 0.89 -1.7
17,987 + +0.0
17,987 + +0.0
17,995 - +0.2
18,000 + -1.8
18,009 - -1.3
18,013 - -1.0
18,023 + -2.7
18,031 - -1.4
18,048 - -1.8
18,059 - +0.1
18,082 - -0.8
18,082 - -2.1
18,087 - -2.1
18,101 - CCNA_00016 0.13 -1.1
18,110 - CCNA_00016 0.15 -1.6
18,148 + CCNA_00016 0.23 -1.8
18,148 + CCNA_00016 0.23 -1.2
18,150 + CCNA_00016 0.24 -1.6
18,150 + CCNA_00016 0.24 -2.2
18,178 + CCNA_00016 0.30 -3.4
18,188 - CCNA_00016 0.32 -0.6
18,290 - CCNA_00016 0.55 -0.7
18,367 + CCNA_00016 0.72 -1.4
18,378 + CCNA_00016 0.74 -0.7
18,381 - CCNA_00016 0.75 -1.6
18,383 + CCNA_00016 0.75 -2.6
18,443 + CCNA_00016 0.88 -0.2
18,461 + +0.2
18,479 - -3.4

Or see this region's nucleotide sequence