Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12505

Experiment: R2A with Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Spectinomycin 0.05 mg/ml
3,125,433	-		CA265_RS12500	0.58	-0.6
3,125,442	+		CA265_RS12500	0.58	-0.1
3,125,443	-				-0.2
3,125,479	+		CA265_RS12500	0.60	-0.4
3,125,480	-		CA265_RS12500	0.60	+0.2
3,125,481	+		CA265_RS12500	0.60	-0.0
3,125,481	+		CA265_RS12500	0.60	+0.2
3,125,570	-		CA265_RS12500	0.64	-0.1
3,125,576	+		CA265_RS12500	0.65	-0.3
3,125,592	+		CA265_RS12500	0.65	-0.3
3,125,592	+		CA265_RS12500	0.65	-0.2
3,125,721	-		CA265_RS12500	0.71	-0.1
3,125,744	-		CA265_RS12500	0.73	+0.2
3,125,747	-		CA265_RS12500	0.73	-0.5
3,125,873	-		CA265_RS12500	0.79	-0.9
3,125,941	+		CA265_RS12500	0.82	-0.2
3,125,992	+		CA265_RS12500	0.84	+0.8
3,125,993	-		CA265_RS12500	0.84	-0.6
3,125,999	-		CA265_RS12500	0.84	-0.4
3,126,002	+		CA265_RS12500	0.85	-0.1
3,126,065	+		CA265_RS12500	0.88	+0.2
3,126,065	+		CA265_RS12500	0.88	-0.3
3,126,090	+		CA265_RS12500	0.89	-0.4
3,126,091	-		CA265_RS12500	0.89	-0.1
3,126,116	-		CA265_RS12500	0.90	-0.4
3,126,127	+				+0.7
3,126,165	+				-0.1
3,126,233	+				+0.7
3,126,279	-				+0.6
3,126,322	+				-0.7
3,126,331	+				+0.2
3,126,331	+				-0.5
3,126,384	+				+0.4
3,126,431	+				+0.4
3,126,434	-				-1.0
3,126,443	-				-0.6
3,126,518	-		CA265_RS12505	0.25	-1.2
3,126,628	+		CA265_RS12505	0.55	-0.1
3,126,708	-		CA265_RS12505	0.78	-0.7
3,126,816	+				+2.4
3,126,816	+				+0.1
3,126,816	+				-0.2
3,126,816	+				-0.4
3,126,817	-				+0.2
3,126,817	-				-0.4
3,126,836	-				-0.1
3,126,848	+				-0.3
3,126,849	-				+0.7
3,126,855	-				+0.3
3,126,855	-				-0.4
3,126,869	-				-0.3
3,126,985	-		CA265_RS12510	0.13	-0.4
3,127,005	-		CA265_RS12510	0.14	-1.1
3,127,026	+		CA265_RS12510	0.15	+0.4
3,127,027	-		CA265_RS12510	0.15	-0.4
3,127,027	-		CA265_RS12510	0.15	+0.0
3,127,061	+		CA265_RS12510	0.17	+0.1
3,127,078	-		CA265_RS12510	0.18	+0.3
3,127,125	+		CA265_RS12510	0.20	+1.7
3,127,323	-		CA265_RS12510	0.31	-1.0
3,127,376	+		CA265_RS12510	0.34	+1.2
3,127,378	+		CA265_RS12510	0.34	+0.7
3,127,452	+		CA265_RS12510	0.38	-0.3
3,127,528	+		CA265_RS12510	0.43	+0.2
3,127,548	+		CA265_RS12510	0.44	-0.4
3,127,634	+		CA265_RS12510	0.48	-0.1
3,127,635	-		CA265_RS12510	0.49	-1.0
3,127,671	+		CA265_RS12510	0.50	-0.3
3,127,679	-		CA265_RS12510	0.51	+0.4
3,127,681	+		CA265_RS12510	0.51	+0.4