Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00355

Experiment: R2A with Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Spectinomycin 0.05 mg/ml
80,991	-		CA265_RS00350	0.45	+0.2
81,127	+		CA265_RS00350	0.54	-0.5
81,127	+		CA265_RS00350	0.54	+0.6
81,162	-		CA265_RS00350	0.56	+0.9
81,186	+		CA265_RS00350	0.58	-1.3
81,408	+		CA265_RS00350	0.72	-0.8
81,408	+		CA265_RS00350	0.72	+1.1
81,438	+		CA265_RS00350	0.74	+0.4
81,438	+		CA265_RS00350	0.74	+0.8
81,452	+		CA265_RS00350	0.75	-0.4
81,452	+		CA265_RS00350	0.75	-0.2
81,453	-		CA265_RS00350	0.75	-1.0
81,470	-				-1.2
81,486	-		CA265_RS00350	0.77	+0.6
81,591	-		CA265_RS00350	0.84	-0.2
81,617	-		CA265_RS00350	0.86	-0.3
81,673	-		CA265_RS00350	0.89	+1.6
81,780	-				-0.7
81,780	-				+0.5
81,816	-				-1.4
81,828	-				-0.2
81,836	+				+0.3
81,837	-				-0.3
81,841	+				+0.6
81,848	-				+1.6
81,878	+				-1.0
81,886	+				+0.3
81,887	-				-0.8
81,933	+				-1.1
81,933	+				+0.6
81,934	-				+1.6
81,947	-				-0.7
82,001	+		CA265_RS00355	0.11	-0.7
82,001	+		CA265_RS00355	0.11	-1.3
82,002	-		CA265_RS00355	0.11	+0.1
82,179	+		CA265_RS00355	0.33	+0.8
82,405	+		CA265_RS00355	0.60	-0.2
82,405	+		CA265_RS00355	0.60	-0.4
82,406	-		CA265_RS00355	0.60	-0.6
82,519	+		CA265_RS00355	0.74	-0.1
82,530	+		CA265_RS00355	0.76	+0.1
82,621	+		CA265_RS00355	0.87	-0.5
82,621	+		CA265_RS00355	0.87	-0.6
82,744	-				-1.0
82,760	+				+0.2
82,761	-				-0.2
82,761	-				-0.3
82,770	-				-0.3
82,833	-				-0.2
82,857	+				-0.0
82,857	+				+0.0
82,858	-				-1.6
82,918	+				+0.8
83,060	+		CA265_RS00360	0.38	+0.1
83,085	+		CA265_RS00360	0.45	+0.9
83,122	-		CA265_RS00360	0.57	+0.0
83,125	-		CA265_RS00360	0.58	-0.0
83,132	+		CA265_RS00360	0.60	+0.1
83,133	-		CA265_RS00360	0.60	+0.8
83,157	-		CA265_RS00360	0.67	+0.6
83,224	+		CA265_RS00360	0.88	+1.1
83,343	-				+0.4
83,390	+				-0.1
83,395	+				-0.4
83,427	+		CA265_RS00365	0.11	-1.2
83,478	+		CA265_RS00365	0.15	+0.1
83,479	-		CA265_RS00365	0.15	+0.2
83,479	-				+1.0
83,489	+		CA265_RS00365	0.16	+0.0
83,489	+		CA265_RS00365	0.16	-1.0
83,523	-		CA265_RS00365	0.18	+0.4
83,568	+		CA265_RS00365	0.21	-0.9
83,569	-		CA265_RS00365	0.22	+0.6
83,632	-		CA265_RS00365	0.26	+0.9
83,667	-		CA265_RS00365	0.29	-0.8
83,712	-		CA265_RS00365	0.32	+0.1
83,712	-		CA265_RS00365	0.32	-0.7