Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_663

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_662 and Ac3H11_663 are separated by 96 nucleotidesAc3H11_663 and Ac3H11_664 are separated by 136 nucleotides Ac3H11_662 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 18,054 to 19,466 _662 Ac3H11_663 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 19,563 to 21,242 _663 Ac3H11_664 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 21,379 to 22,134 _664 Position (kb) 19 20 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 18.729 kb on + strand, within Ac3H11_662at 18.729 kb on + strand, within Ac3H11_662at 18.729 kb on + strand, within Ac3H11_662at 18.729 kb on + strand, within Ac3H11_662at 18.730 kb on - strand, within Ac3H11_662at 18.730 kb on - strand, within Ac3H11_662at 18.730 kb on - strand, within Ac3H11_662at 18.730 kb on - strand, within Ac3H11_662at 18.730 kb on - strand, within Ac3H11_662at 18.783 kb on - strand, within Ac3H11_662at 18.828 kb on + strand, within Ac3H11_662at 18.828 kb on + strand, within Ac3H11_662at 18.828 kb on + strand, within Ac3H11_662at 18.829 kb on - strand, within Ac3H11_662at 18.829 kb on - strand, within Ac3H11_662at 18.829 kb on - strand, within Ac3H11_662at 18.829 kb on - strand, within Ac3H11_662at 18.829 kb on - strand, within Ac3H11_662at 18.829 kb on - strand, within Ac3H11_662at 18.829 kb on - strand, within Ac3H11_662at 19.168 kb on - strand, within Ac3H11_662at 19.168 kb on - strand, within Ac3H11_662at 19.168 kb on - strand, within Ac3H11_662at 19.168 kb on - strand, within Ac3H11_662at 19.362 kb on + strandat 19.389 kb on + strandat 19.473 kb on + strandat 19.473 kb on + strandat 19.474 kb on - strandat 19.474 kb on - strandat 19.474 kb on - strandat 19.629 kb on + strandat 19.629 kb on + strandat 19.630 kb on - strandat 19.630 kb on - strandat 19.630 kb on - strandat 19.630 kb on - strandat 19.671 kb on + strandat 19.690 kb on - strandat 19.716 kb on + strandat 19.716 kb on + strandat 19.716 kb on + strandat 19.717 kb on - strandat 19.717 kb on - strandat 19.717 kb on - strandat 19.717 kb on - strandat 19.717 kb on - strandat 19.755 kb on + strand, within Ac3H11_663at 19.756 kb on - strand, within Ac3H11_663at 19.756 kb on - strand, within Ac3H11_663at 19.756 kb on - strand, within Ac3H11_663at 19.821 kb on + strand, within Ac3H11_663at 19.822 kb on - strand, within Ac3H11_663at 19.884 kb on + strand, within Ac3H11_663at 19.884 kb on + strand, within Ac3H11_663at 19.884 kb on + strand, within Ac3H11_663at 19.961 kb on + strand, within Ac3H11_663at 20.058 kb on + strand, within Ac3H11_663at 20.058 kb on + strand, within Ac3H11_663at 20.058 kb on + strand, within Ac3H11_663at 20.058 kb on + strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.059 kb on - strand, within Ac3H11_663at 20.095 kb on - strand, within Ac3H11_663at 20.095 kb on - strand, within Ac3H11_663at 20.199 kb on + strand, within Ac3H11_663at 20.199 kb on + strand, within Ac3H11_663at 20.200 kb on - strand, within Ac3H11_663at 20.352 kb on + strand, within Ac3H11_663at 20.352 kb on + strand, within Ac3H11_663at 20.352 kb on + strand, within Ac3H11_663at 20.353 kb on - strand, within Ac3H11_663at 20.643 kb on + strand, within Ac3H11_663at 20.643 kb on + strand, within Ac3H11_663at 20.643 kb on + strand, within Ac3H11_663at 20.700 kb on + strand, within Ac3H11_663at 20.701 kb on - strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.736 kb on + strand, within Ac3H11_663at 20.737 kb on - strand, within Ac3H11_663at 20.737 kb on - strand, within Ac3H11_663at 20.737 kb on - strand, within Ac3H11_663at 20.737 kb on - strand, within Ac3H11_663at 20.737 kb on - strand, within Ac3H11_663at 20.737 kb on - strand, within Ac3H11_663at 20.737 kb on - strand, within Ac3H11_663at 20.737 kb on - strand, within Ac3H11_663at 20.737 kb on - strand, within Ac3H11_663at 20.877 kb on + strand, within Ac3H11_663at 20.878 kb on - strand, within Ac3H11_663at 20.976 kb on + strand, within Ac3H11_663at 20.976 kb on + strand, within Ac3H11_663at 21.240 kb on + strandat 21.241 kb on - strandat 21.378 kb on + strandat 21.379 kb on - strandat 21.379 kb on - strandat 21.385 kb on - strandat 21.385 kb on - strandat 21.385 kb on - strandat 21.385 kb on - strandat 21.661 kb on + strand, within Ac3H11_664at 21.661 kb on + strand, within Ac3H11_664at 21.661 kb on + strand, within Ac3H11_664at 21.661 kb on + strand, within Ac3H11_664at 21.661 kb on + strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.718 kb on + strand, within Ac3H11_664at 21.719 kb on - strand, within Ac3H11_664at 21.995 kb on - strand, within Ac3H11_664at 22.211 kb on + strandat 22.211 kb on + strandat 22.212 kb on - strandat 22.212 kb on - strandat 22.212 kb on - strandat 22.224 kb on - strandat 22.224 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
18,729 + Ac3H11_662 0.48 +0.1
18,729 + Ac3H11_662 0.48 -0.4
18,729 + Ac3H11_662 0.48 +2.2
18,729 + Ac3H11_662 0.48 +1.3
18,730 - Ac3H11_662 0.48 +0.2
18,730 - Ac3H11_662 0.48 +1.2
18,730 - Ac3H11_662 0.48 -1.0
18,730 - Ac3H11_662 0.48 -0.3
18,730 - Ac3H11_662 0.48 +0.9
18,783 - Ac3H11_662 0.52 +0.8
18,828 + Ac3H11_662 0.55 +0.6
18,828 + Ac3H11_662 0.55 +1.6
18,828 + Ac3H11_662 0.55 +1.2
18,829 - Ac3H11_662 0.55 +0.2
18,829 - Ac3H11_662 0.55 +0.2
18,829 - Ac3H11_662 0.55 +0.7
18,829 - Ac3H11_662 0.55 -0.7
18,829 - Ac3H11_662 0.55 -0.3
18,829 - Ac3H11_662 0.55 +0.8
18,829 - Ac3H11_662 0.55 +0.1
19,168 - Ac3H11_662 0.79 +0.8
19,168 - Ac3H11_662 0.79 -0.4
19,168 - Ac3H11_662 0.79 +0.8
19,168 - Ac3H11_662 0.79 +0.2
19,362 + +0.4
19,389 + +2.5
19,473 + -0.8
19,473 + -0.6
19,474 - -0.9
19,474 - +1.0
19,474 - +0.2
19,629 + -0.0
19,629 + -0.7
19,630 - +1.0
19,630 - -0.2
19,630 - +0.6
19,630 - +0.3
19,671 + +0.4
19,690 - -0.3
19,716 + +1.9
19,716 + -0.3
19,716 + +0.1
19,717 - +0.3
19,717 - -0.3
19,717 - +0.3
19,717 - +0.2
19,717 - +0.3
19,755 + Ac3H11_663 0.11 -0.0
19,756 - Ac3H11_663 0.11 -0.7
19,756 - Ac3H11_663 0.11 -0.0
19,756 - Ac3H11_663 0.11 +2.2
19,821 + Ac3H11_663 0.15 -0.1
19,822 - Ac3H11_663 0.15 -0.2
19,884 + Ac3H11_663 0.19 +0.1
19,884 + Ac3H11_663 0.19 +0.1
19,884 + Ac3H11_663 0.19 +1.6
19,961 + Ac3H11_663 0.24 +0.7
20,058 + Ac3H11_663 0.29 -0.2
20,058 + Ac3H11_663 0.29 +0.8
20,058 + Ac3H11_663 0.29 +1.1
20,058 + Ac3H11_663 0.29 +0.1
20,059 - Ac3H11_663 0.30 -0.0
20,059 - Ac3H11_663 0.30 +0.7
20,059 - Ac3H11_663 0.30 -0.2
20,059 - Ac3H11_663 0.30 +0.6
20,059 - Ac3H11_663 0.30 -1.8
20,059 - Ac3H11_663 0.30 +0.4
20,059 - Ac3H11_663 0.30 -0.7
20,059 - Ac3H11_663 0.30 +0.2
20,059 - Ac3H11_663 0.30 -0.6
20,059 - Ac3H11_663 0.30 +0.8
20,059 - Ac3H11_663 0.30 +0.1
20,095 - Ac3H11_663 0.32 -1.4
20,095 - Ac3H11_663 0.32 -0.1
20,199 + Ac3H11_663 0.38 +0.7
20,199 + Ac3H11_663 0.38 +0.7
20,200 - Ac3H11_663 0.38 +0.2
20,352 + Ac3H11_663 0.47 +0.7
20,352 + Ac3H11_663 0.47 +0.3
20,352 + Ac3H11_663 0.47 +1.0
20,353 - Ac3H11_663 0.47 +0.4
20,643 + Ac3H11_663 0.64 +0.2
20,643 + Ac3H11_663 0.64 -1.3
20,643 + Ac3H11_663 0.64 +0.7
20,700 + Ac3H11_663 0.68 -0.1
20,701 - Ac3H11_663 0.68 +0.3
20,736 + Ac3H11_663 0.70 +1.0
20,736 + Ac3H11_663 0.70 +0.5
20,736 + Ac3H11_663 0.70 +0.5
20,736 + Ac3H11_663 0.70 +0.8
20,736 + Ac3H11_663 0.70 -0.5
20,736 + Ac3H11_663 0.70 +1.0
20,736 + Ac3H11_663 0.70 +1.4
20,736 + Ac3H11_663 0.70 -0.2
20,736 + Ac3H11_663 0.70 +0.1
20,736 + Ac3H11_663 0.70 -0.0
20,736 + Ac3H11_663 0.70 -0.1
20,736 + Ac3H11_663 0.70 +0.3
20,736 + Ac3H11_663 0.70 -0.1
20,736 + Ac3H11_663 0.70 +1.1
20,737 - Ac3H11_663 0.70 +0.2
20,737 - Ac3H11_663 0.70 +1.4
20,737 - Ac3H11_663 0.70 +0.2
20,737 - Ac3H11_663 0.70 +0.4
20,737 - Ac3H11_663 0.70 -0.2
20,737 - Ac3H11_663 0.70 -1.4
20,737 - Ac3H11_663 0.70 -0.5
20,737 - Ac3H11_663 0.70 -0.4
20,737 - Ac3H11_663 0.70 +0.3
20,877 + Ac3H11_663 0.78 -1.3
20,878 - Ac3H11_663 0.78 +0.1
20,976 + Ac3H11_663 0.84 -1.0
20,976 + Ac3H11_663 0.84 -0.1
21,240 + +0.5
21,241 - +2.3
21,378 + +0.4
21,379 - +0.4
21,379 - +1.1
21,385 - -0.2
21,385 - -0.8
21,385 - -0.2
21,385 - +0.5
21,661 + Ac3H11_664 0.37 +0.3
21,661 + Ac3H11_664 0.37 +0.9
21,661 + Ac3H11_664 0.37 -0.4
21,661 + Ac3H11_664 0.37 +0.6
21,661 + Ac3H11_664 0.37 +0.4
21,662 - Ac3H11_664 0.37 -0.3
21,662 - Ac3H11_664 0.37 +0.3
21,662 - Ac3H11_664 0.37 -0.5
21,662 - Ac3H11_664 0.37 -0.2
21,662 - Ac3H11_664 0.37 +0.3
21,662 - Ac3H11_664 0.37 -0.3
21,718 + Ac3H11_664 0.45 +0.4
21,719 - Ac3H11_664 0.45 +0.2
21,995 - Ac3H11_664 0.81 +0.4
22,211 + +1.1
22,211 + -0.0
22,212 - +0.6
22,212 - -0.2
22,212 - +0.6
22,224 - -0.2
22,224 - +0.1

Or see this region's nucleotide sequence