Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3927

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3926 and Ac3H11_3927 overlap by 39 nucleotidesAc3H11_3927 and Ac3H11_3928 are separated by 177 nucleotidesAc3H11_3928 and Ac3H11_3929 are separated by 49 nucleotides Ac3H11_3926 - putative membrane protein, at 142,218 to 143,453 _3926 Ac3H11_3927 - hypothetical protein, at 143,415 to 143,540 _3927 Ac3H11_3928 - Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-), at 143,718 to 144,380 _3928 Ac3H11_3929 - ATPase associated with various cellular activities, AAA_5, at 144,430 to 145,341 _3929 Position (kb) 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 142.442 kb on - strand, within Ac3H11_3926at 142.442 kb on - strand, within Ac3H11_3926at 142.442 kb on - strandat 142.650 kb on - strand, within Ac3H11_3926at 142.781 kb on + strandat 142.984 kb on + strand, within Ac3H11_3926at 142.985 kb on - strand, within Ac3H11_3926at 142.985 kb on - strand, within Ac3H11_3926at 142.985 kb on - strandat 143.003 kb on + strandat 143.003 kb on + strandat 143.003 kb on + strandat 143.003 kb on + strand, within Ac3H11_3926at 143.003 kb on + strandat 143.004 kb on - strandat 143.110 kb on + strand, within Ac3H11_3926at 143.110 kb on + strand, within Ac3H11_3926at 143.111 kb on - strand, within Ac3H11_3926at 143.111 kb on - strandat 143.587 kb on + strandat 143.588 kb on - strandat 143.588 kb on - strandat 143.773 kb on + strandat 143.773 kb on + strandat 143.773 kb on + strandat 143.773 kb on + strandat 143.773 kb on + strandat 143.773 kb on + strandat 143.774 kb on - strandat 143.774 kb on - strandat 143.774 kb on - strandat 143.774 kb on - strandat 143.774 kb on - strandat 143.774 kb on - strandat 143.774 kb on - strandat 143.872 kb on + strand, within Ac3H11_3928at 143.872 kb on + strand, within Ac3H11_3928at 143.873 kb on - strand, within Ac3H11_3928at 143.873 kb on - strand, within Ac3H11_3928at 143.896 kb on + strand, within Ac3H11_3928at 143.896 kb on + strand, within Ac3H11_3928at 143.896 kb on + strand, within Ac3H11_3928at 143.896 kb on + strand, within Ac3H11_3928at 143.896 kb on + strand, within Ac3H11_3928at 143.896 kb on + strand, within Ac3H11_3928at 143.896 kb on + strand, within Ac3H11_3928at 143.896 kb on + strand, within Ac3H11_3928at 143.896 kb on + strand, within Ac3H11_3928at 144.067 kb on + strand, within Ac3H11_3928at 144.068 kb on - strand, within Ac3H11_3928at 144.068 kb on - strand, within Ac3H11_3928at 144.068 kb on - strand, within Ac3H11_3928at 144.068 kb on - strand, within Ac3H11_3928at 144.070 kb on + strand, within Ac3H11_3928at 144.070 kb on + strand, within Ac3H11_3928at 144.071 kb on - strand, within Ac3H11_3928at 144.071 kb on - strand, within Ac3H11_3928at 144.154 kb on + strand, within Ac3H11_3928at 144.155 kb on - strand, within Ac3H11_3928at 144.155 kb on - strand, within Ac3H11_3928at 144.155 kb on - strand, within Ac3H11_3928at 144.155 kb on - strand, within Ac3H11_3928at 144.357 kb on + strandat 144.357 kb on + strandat 144.358 kb on - strandat 144.358 kb on - strandat 144.435 kb on + strandat 144.436 kb on - strandat 144.436 kb on - strandat 144.438 kb on - strandat 144.438 kb on - strandat 144.511 kb on + strandat 144.511 kb on + strandat 144.511 kb on + strandat 144.511 kb on + strandat 144.511 kb on + strandat 144.512 kb on - strandat 144.512 kb on - strandat 144.512 kb on - strandat 144.512 kb on - strandat 144.512 kb on - strandat 144.512 kb on - strandat 144.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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142,442 - Ac3H11_3926 0.18 -1.0
142,442 - Ac3H11_3926 0.18 -1.8
142,442 - -0.5
142,650 - Ac3H11_3926 0.35 -1.3
142,781 + -0.2
142,984 + Ac3H11_3926 0.62 -0.5
142,985 - Ac3H11_3926 0.62 +0.7
142,985 - Ac3H11_3926 0.62 -1.4
142,985 - +0.3
143,003 + +0.5
143,003 + -0.5
143,003 + -0.2
143,003 + Ac3H11_3926 0.64 -0.1
143,003 + +2.3
143,004 - -0.7
143,110 + Ac3H11_3926 0.72 +0.6
143,110 + Ac3H11_3926 0.72 +1.0
143,111 - Ac3H11_3926 0.72 -0.2
143,111 - -0.2
143,587 + +1.0
143,588 - +0.4
143,588 - +0.4
143,773 + +0.4
143,773 + -1.5
143,773 + -0.4
143,773 + -2.7
143,773 + -1.6
143,773 + -0.6
143,774 - +2.3
143,774 - -3.4
143,774 - -2.2
143,774 - -1.8
143,774 - -1.3
143,774 - -0.5
143,774 - -1.5
143,872 + Ac3H11_3928 0.23 -1.8
143,872 + Ac3H11_3928 0.23 -1.6
143,873 - Ac3H11_3928 0.23 -0.6
143,873 - Ac3H11_3928 0.23 -1.6
143,896 + Ac3H11_3928 0.27 -0.5
143,896 + Ac3H11_3928 0.27 -1.6
143,896 + Ac3H11_3928 0.27 -1.4
143,896 + Ac3H11_3928 0.27 -1.3
143,896 + Ac3H11_3928 0.27 +0.3
143,896 + Ac3H11_3928 0.27 -0.6
143,896 + Ac3H11_3928 0.27 -1.1
143,896 + Ac3H11_3928 0.27 -0.8
143,896 + Ac3H11_3928 0.27 -2.2
144,067 + Ac3H11_3928 0.53 -0.2
144,068 - Ac3H11_3928 0.53 -1.0
144,068 - Ac3H11_3928 0.53 -1.7
144,068 - Ac3H11_3928 0.53 -0.2
144,068 - Ac3H11_3928 0.53 -1.0
144,070 + Ac3H11_3928 0.53 -1.4
144,070 + Ac3H11_3928 0.53 -1.0
144,071 - Ac3H11_3928 0.53 -2.4
144,071 - Ac3H11_3928 0.53 -0.4
144,154 + Ac3H11_3928 0.66 -2.2
144,155 - Ac3H11_3928 0.66 +0.5
144,155 - Ac3H11_3928 0.66 -0.9
144,155 - Ac3H11_3928 0.66 -1.5
144,155 - Ac3H11_3928 0.66 -0.9
144,357 + -1.1
144,357 + -0.3
144,358 - -0.5
144,358 - -0.7
144,435 + -0.9
144,436 - +0.2
144,436 - -1.5
144,438 - -0.0
144,438 - -0.4
144,511 + -0.2
144,511 + -0.4
144,511 + -0.5
144,511 + -0.3
144,511 + +0.5
144,512 - +0.3
144,512 - -0.9
144,512 - +0.5
144,512 - +0.4
144,512 - +0.7
144,512 - -1.1
144,512 - -0.1

Or see this region's nucleotide sequence