Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1942

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1940 and Ac3H11_1941 are separated by 108 nucleotidesAc3H11_1941 and Ac3H11_1942 are separated by 181 nucleotidesAc3H11_1942 and Ac3H11_1943 overlap by 4 nucleotidesAc3H11_1943 and Ac3H11_1944 are separated by 187 nucleotides Ac3H11_1940 - Enoyl-CoA hydratase (EC 4.2.1.17), at 156,022 to 156,819 _1940 Ac3H11_1941 - putative protein PaaI, possibly involved in aromatic compounds catabolism, at 156,928 to 157,413 _1941 Ac3H11_1942 - Phenylacetic acid degradation protein paaI, at 157,595 to 158,053 _1942 Ac3H11_1943 - Cu(I)-responsive transcriptional regulator, at 158,050 to 158,505 _1943 Ac3H11_1944 - COG1664: Integral membrane protein CcmA involved in cell shape determination, at 158,693 to 159,277 _1944 Position (kb) 157 158 159Strain fitness (log2 ratio) -2 -1 0 1at 156.858 kb on + strandat 156.863 kb on - strandat 157.105 kb on + strand, within Ac3H11_1941at 157.105 kb on + strand, within Ac3H11_1941at 157.112 kb on - strand, within Ac3H11_1941at 157.267 kb on + strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.399 kb on + strandat 157.399 kb on + strandat 157.399 kb on + strandat 157.399 kb on + strandat 157.400 kb on - strandat 157.400 kb on - strandat 157.400 kb on - strandat 157.400 kb on - strandat 157.418 kb on + strandat 157.419 kb on - strandat 157.487 kb on + strandat 157.487 kb on + strandat 157.488 kb on - strandat 157.496 kb on + strandat 157.496 kb on + strandat 157.496 kb on + strandat 157.497 kb on - strandat 157.497 kb on - strandat 157.497 kb on - strandat 157.497 kb on - strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.501 kb on - strandat 157.501 kb on - strandat 157.506 kb on + strandat 157.507 kb on - strandat 157.860 kb on + strand, within Ac3H11_1942at 157.861 kb on - strand, within Ac3H11_1942at 157.861 kb on - strand, within Ac3H11_1942at 157.946 kb on - strand, within Ac3H11_1942at 158.330 kb on - strand, within Ac3H11_1943at 158.448 kb on - strand, within Ac3H11_1943at 158.497 kb on + strandat 158.497 kb on + strandat 158.517 kb on + strandat 158.517 kb on + strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.665 kb on + strandat 158.666 kb on - strandat 158.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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156,858 + -0.3
156,863 - -0.3
157,105 + Ac3H11_1941 0.36 -0.5
157,105 + Ac3H11_1941 0.36 -2.0
157,112 - Ac3H11_1941 0.38 +0.4
157,267 + Ac3H11_1941 0.70 -0.4
157,268 - Ac3H11_1941 0.70 -0.6
157,268 - Ac3H11_1941 0.70 +0.0
157,268 - Ac3H11_1941 0.70 -0.6
157,268 - Ac3H11_1941 0.70 +1.3
157,399 + -1.7
157,399 + -2.0
157,399 + +0.6
157,399 + -0.7
157,400 - -0.1
157,400 - -1.0
157,400 - +0.4
157,400 - +0.3
157,418 + +0.3
157,419 - +0.0
157,487 + -0.6
157,487 + -0.5
157,488 - +0.9
157,496 + -0.0
157,496 + +0.7
157,496 + -0.8
157,497 - -0.1
157,497 - +0.8
157,497 - +0.3
157,497 - +0.3
157,500 + +0.4
157,500 + +0.0
157,500 + +0.4
157,500 + +0.1
157,500 + +0.2
157,500 + +0.3
157,500 + +0.4
157,501 - +0.2
157,501 - -1.9
157,506 + -0.7
157,507 - -0.7
157,860 + Ac3H11_1942 0.58 -0.3
157,861 - Ac3H11_1942 0.58 -1.2
157,861 - Ac3H11_1942 0.58 -0.2
157,946 - Ac3H11_1942 0.76 +0.5
158,330 - Ac3H11_1943 0.61 -0.2
158,448 - Ac3H11_1943 0.87 +1.7
158,497 + +0.3
158,497 + -0.6
158,517 + -0.8
158,517 + -0.1
158,518 - +0.7
158,518 - +0.1
158,518 - -0.6
158,518 - +0.3
158,518 - +0.7
158,665 + -1.6
158,666 - -0.2
158,666 - +1.6

Or see this region's nucleotide sequence