Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1940

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1939 and Ac3H11_1940 are separated by 192 nucleotidesAc3H11_1940 and Ac3H11_1941 are separated by 108 nucleotidesAc3H11_1941 and Ac3H11_1942 are separated by 181 nucleotides Ac3H11_1939 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 154,954 to 155,829 _1939 Ac3H11_1940 - Enoyl-CoA hydratase (EC 4.2.1.17), at 156,022 to 156,819 _1940 Ac3H11_1941 - putative protein PaaI, possibly involved in aromatic compounds catabolism, at 156,928 to 157,413 _1941 Ac3H11_1942 - Phenylacetic acid degradation protein paaI, at 157,595 to 158,053 _1942 Position (kb) 156 157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 155.027 kb on + strandat 155.027 kb on + strandat 155.028 kb on - strandat 155.028 kb on - strandat 155.028 kb on - strandat 155.028 kb on - strandat 155.060 kb on + strand, within Ac3H11_1939at 155.061 kb on - strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.292 kb on - strand, within Ac3H11_1939at 155.292 kb on - strand, within Ac3H11_1939at 155.292 kb on - strand, within Ac3H11_1939at 155.345 kb on + strand, within Ac3H11_1939at 155.453 kb on + strand, within Ac3H11_1939at 155.469 kb on + strand, within Ac3H11_1939at 155.469 kb on + strand, within Ac3H11_1939at 155.470 kb on - strand, within Ac3H11_1939at 155.470 kb on - strand, within Ac3H11_1939at 155.470 kb on - strand, within Ac3H11_1939at 155.470 kb on - strand, within Ac3H11_1939at 155.522 kb on + strand, within Ac3H11_1939at 155.747 kb on + strandat 155.747 kb on + strandat 155.748 kb on - strandat 155.780 kb on + strandat 155.781 kb on - strandat 155.781 kb on - strandat 155.781 kb on - strandat 155.781 kb on - strandat 155.871 kb on + strandat 155.876 kb on - strandat 155.876 kb on - strandat 155.914 kb on - strandat 155.978 kb on - strandat 155.984 kb on + strandat 155.984 kb on + strandat 155.984 kb on + strandat 155.985 kb on - strandat 155.997 kb on + strandat 155.997 kb on + strandat 155.997 kb on + strandat 155.997 kb on + strandat 155.997 kb on + strandat 155.997 kb on + strandat 155.997 kb on + strandat 155.997 kb on + strandat 155.997 kb on + strandat 155.998 kb on - strandat 155.998 kb on - strandat 155.998 kb on - strandat 155.998 kb on - strandat 155.998 kb on - strandat 155.999 kb on + strandat 155.999 kb on + strandat 156.000 kb on - strandat 156.029 kb on + strandat 156.430 kb on + strand, within Ac3H11_1940at 156.430 kb on + strand, within Ac3H11_1940at 156.430 kb on + strand, within Ac3H11_1940at 156.430 kb on + strand, within Ac3H11_1940at 156.430 kb on + strand, within Ac3H11_1940at 156.430 kb on + strand, within Ac3H11_1940at 156.431 kb on - strand, within Ac3H11_1940at 156.858 kb on + strandat 156.863 kb on - strandat 157.105 kb on + strand, within Ac3H11_1941at 157.105 kb on + strand, within Ac3H11_1941at 157.112 kb on - strand, within Ac3H11_1941at 157.267 kb on + strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.268 kb on - strand, within Ac3H11_1941at 157.399 kb on + strandat 157.399 kb on + strandat 157.399 kb on + strandat 157.399 kb on + strandat 157.400 kb on - strandat 157.400 kb on - strandat 157.400 kb on - strandat 157.400 kb on - strandat 157.418 kb on + strandat 157.419 kb on - strandat 157.487 kb on + strandat 157.487 kb on + strandat 157.488 kb on - strandat 157.496 kb on + strandat 157.496 kb on + strandat 157.496 kb on + strandat 157.497 kb on - strandat 157.497 kb on - strandat 157.497 kb on - strandat 157.497 kb on - strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.500 kb on + strandat 157.501 kb on - strandat 157.501 kb on - strandat 157.506 kb on + strandat 157.507 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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155,027 + +1.0
155,027 + +0.7
155,028 - +0.6
155,028 - -0.8
155,028 - -0.7
155,028 - -1.0
155,060 + Ac3H11_1939 0.12 -0.2
155,061 - Ac3H11_1939 0.12 -0.3
155,288 + Ac3H11_1939 0.38 -0.3
155,288 + Ac3H11_1939 0.38 +0.4
155,288 + Ac3H11_1939 0.38 +0.4
155,288 + Ac3H11_1939 0.38 +0.2
155,288 + Ac3H11_1939 0.38 +0.2
155,288 + Ac3H11_1939 0.38 -0.6
155,288 + Ac3H11_1939 0.38 +0.1
155,289 - Ac3H11_1939 0.38 -1.0
155,289 - Ac3H11_1939 0.38 -0.1
155,289 - Ac3H11_1939 0.38 +0.4
155,289 - Ac3H11_1939 0.38 +0.2
155,289 - Ac3H11_1939 0.38 +0.0
155,289 - Ac3H11_1939 0.38 +0.3
155,289 - Ac3H11_1939 0.38 +0.2
155,289 - Ac3H11_1939 0.38 +1.1
155,289 - Ac3H11_1939 0.38 +1.1
155,289 - Ac3H11_1939 0.38 -0.2
155,289 - Ac3H11_1939 0.38 +0.4
155,292 - Ac3H11_1939 0.39 +0.5
155,292 - Ac3H11_1939 0.39 +0.1
155,292 - Ac3H11_1939 0.39 -0.7
155,345 + Ac3H11_1939 0.45 +0.7
155,453 + Ac3H11_1939 0.57 +0.9
155,469 + Ac3H11_1939 0.59 +1.5
155,469 + Ac3H11_1939 0.59 +0.3
155,470 - Ac3H11_1939 0.59 -0.3
155,470 - Ac3H11_1939 0.59 -0.6
155,470 - Ac3H11_1939 0.59 +0.1
155,470 - Ac3H11_1939 0.59 +0.5
155,522 + Ac3H11_1939 0.65 +0.7
155,747 + +0.3
155,747 + +0.5
155,748 - +0.2
155,780 + +0.0
155,781 - -0.7
155,781 - -0.5
155,781 - +0.5
155,781 - -3.8
155,871 + +0.1
155,876 - +0.3
155,876 - -0.8
155,914 - +0.1
155,978 - -0.8
155,984 + -0.0
155,984 + +0.5
155,984 + +0.5
155,985 - +0.4
155,997 + -0.0
155,997 + -0.4
155,997 + +0.3
155,997 + -1.0
155,997 + +0.2
155,997 + +0.6
155,997 + +0.5
155,997 + +0.1
155,997 + -0.4
155,998 - +0.3
155,998 - -0.8
155,998 - -0.6
155,998 - +0.9
155,998 - -0.1
155,999 + +0.1
155,999 + +0.1
156,000 - -0.6
156,029 + +0.2
156,430 + Ac3H11_1940 0.51 +1.5
156,430 + Ac3H11_1940 0.51 +0.6
156,430 + Ac3H11_1940 0.51 +1.7
156,430 + Ac3H11_1940 0.51 +0.1
156,430 + Ac3H11_1940 0.51 +1.5
156,430 + Ac3H11_1940 0.51 -0.4
156,431 - Ac3H11_1940 0.51 -0.5
156,858 + -0.3
156,863 - -0.3
157,105 + Ac3H11_1941 0.36 -0.5
157,105 + Ac3H11_1941 0.36 -2.0
157,112 - Ac3H11_1941 0.38 +0.4
157,267 + Ac3H11_1941 0.70 -0.4
157,268 - Ac3H11_1941 0.70 -0.6
157,268 - Ac3H11_1941 0.70 +0.0
157,268 - Ac3H11_1941 0.70 -0.6
157,268 - Ac3H11_1941 0.70 +1.3
157,399 + -1.7
157,399 + -2.0
157,399 + +0.6
157,399 + -0.7
157,400 - -0.1
157,400 - -1.0
157,400 - +0.4
157,400 - +0.3
157,418 + +0.3
157,419 - +0.0
157,487 + -0.6
157,487 + -0.5
157,488 - +0.9
157,496 + -0.0
157,496 + +0.7
157,496 + -0.8
157,497 - -0.1
157,497 - +0.8
157,497 - +0.3
157,497 - +0.3
157,500 + +0.4
157,500 + +0.0
157,500 + +0.4
157,500 + +0.1
157,500 + +0.2
157,500 + +0.3
157,500 + +0.4
157,501 - +0.2
157,501 - -1.9
157,506 + -0.7
157,507 - -0.7

Or see this region's nucleotide sequence