Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25065

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_25060 and AO353_25065 are separated by 173 nucleotidesAO353_25065 and AO353_25070 overlap by 14 nucleotides AO353_25060: AO353_25060 - LysR family transcriptional regulator, at 5,526,629 to 5,527,564 _25060 AO353_25065: AO353_25065 - tricarballylate dehydrogenase, at 5,527,738 to 5,529,189 _25065 AO353_25070: AO353_25070 - tricarballylate utilization protein B, at 5,529,176 to 5,530,333 _25070 Position (kb) 5527 5528 5529 5530Strain fitness (log2 ratio) -2 -1 0 1 2at 5526.799 kb on + strand, within AO353_25060at 5526.800 kb on - strand, within AO353_25060at 5526.800 kb on - strand, within AO353_25060at 5526.800 kb on - strand, within AO353_25060at 5526.800 kb on - strand, within AO353_25060at 5526.800 kb on - strand, within AO353_25060at 5527.079 kb on - strand, within AO353_25060at 5527.116 kb on + strand, within AO353_25060at 5527.200 kb on + strand, within AO353_25060at 5527.200 kb on + strand, within AO353_25060at 5527.201 kb on - strand, within AO353_25060at 5527.231 kb on + strand, within AO353_25060at 5527.232 kb on - strand, within AO353_25060at 5527.232 kb on - strand, within AO353_25060at 5527.232 kb on - strand, within AO353_25060at 5527.413 kb on + strand, within AO353_25060at 5527.413 kb on + strand, within AO353_25060at 5527.413 kb on + strand, within AO353_25060at 5527.413 kb on + strand, within AO353_25060at 5527.414 kb on - strand, within AO353_25060at 5527.594 kb on + strandat 5527.663 kb on + strandat 5527.664 kb on - strandat 5527.664 kb on - strandat 5527.664 kb on - strandat 5527.677 kb on + strandat 5527.677 kb on + strandat 5527.677 kb on + strandat 5527.677 kb on + strandat 5527.677 kb on + strandat 5527.678 kb on - strandat 5527.678 kb on - strandat 5527.678 kb on - strandat 5527.678 kb on - strandat 5527.678 kb on - strandat 5527.748 kb on + strandat 5527.748 kb on + strandat 5527.748 kb on + strandat 5527.749 kb on - strandat 5527.749 kb on - strandat 5527.749 kb on - strandat 5527.749 kb on - strandat 5527.751 kb on + strandat 5527.751 kb on + strandat 5527.751 kb on + strandat 5527.752 kb on - strandat 5527.752 kb on - strandat 5527.752 kb on - strandat 5527.752 kb on - strandat 5527.752 kb on - strandat 5527.752 kb on - strandat 5527.754 kb on + strandat 5527.754 kb on + strandat 5527.754 kb on + strandat 5527.754 kb on + strandat 5527.755 kb on - strandat 5527.755 kb on - strandat 5527.755 kb on - strandat 5527.755 kb on - strandat 5527.755 kb on - strandat 5527.812 kb on + strandat 5527.887 kb on + strand, within AO353_25065at 5527.887 kb on + strand, within AO353_25065at 5527.887 kb on + strand, within AO353_25065at 5527.887 kb on + strand, within AO353_25065at 5527.887 kb on + strand, within AO353_25065at 5527.887 kb on + strand, within AO353_25065at 5527.887 kb on + strandat 5527.887 kb on + strand, within AO353_25065at 5527.888 kb on - strandat 5527.888 kb on - strand, within AO353_25065at 5527.888 kb on - strand, within AO353_25065at 5527.888 kb on - strand, within AO353_25065at 5527.888 kb on - strand, within AO353_25065at 5527.939 kb on + strand, within AO353_25065at 5527.940 kb on - strand, within AO353_25065at 5527.940 kb on - strand, within AO353_25065at 5527.940 kb on - strand, within AO353_25065at 5527.974 kb on + strand, within AO353_25065at 5527.974 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strand, within AO353_25065at 5527.995 kb on + strandat 5527.996 kb on - strand, within AO353_25065at 5527.996 kb on - strand, within AO353_25065at 5527.996 kb on - strand, within AO353_25065at 5527.996 kb on - strand, within AO353_25065at 5527.996 kb on - strand, within AO353_25065at 5527.996 kb on - strand, within AO353_25065at 5528.078 kb on + strand, within AO353_25065at 5528.078 kb on + strand, within AO353_25065at 5528.078 kb on + strand, within AO353_25065at 5528.079 kb on - strand, within AO353_25065at 5528.079 kb on - strand, within AO353_25065at 5528.130 kb on + strand, within AO353_25065at 5528.131 kb on - strand, within AO353_25065at 5528.131 kb on - strand, within AO353_25065at 5528.137 kb on + strand, within AO353_25065at 5528.177 kb on - strand, within AO353_25065at 5528.177 kb on - strand, within AO353_25065at 5528.231 kb on - strandat 5528.277 kb on + strand, within AO353_25065at 5528.421 kb on - strand, within AO353_25065at 5528.421 kb on - strand, within AO353_25065at 5528.512 kb on + strand, within AO353_25065at 5528.512 kb on + strand, within AO353_25065at 5528.513 kb on - strand, within AO353_25065at 5528.513 kb on - strand, within AO353_25065at 5528.513 kb on - strand, within AO353_25065at 5528.523 kb on + strand, within AO353_25065at 5528.524 kb on - strand, within AO353_25065at 5528.587 kb on + strand, within AO353_25065at 5528.587 kb on + strand, within AO353_25065at 5528.668 kb on + strand, within AO353_25065at 5528.727 kb on + strand, within AO353_25065at 5528.727 kb on + strand, within AO353_25065at 5528.728 kb on - strand, within AO353_25065at 5528.728 kb on - strand, within AO353_25065at 5528.728 kb on - strand, within AO353_25065at 5528.803 kb on + strand, within AO353_25065at 5528.804 kb on - strand, within AO353_25065at 5528.804 kb on - strand, within AO353_25065at 5528.804 kb on - strand, within AO353_25065at 5528.907 kb on - strand, within AO353_25065at 5528.934 kb on + strand, within AO353_25065at 5528.934 kb on + strand, within AO353_25065at 5528.934 kb on + strand, within AO353_25065at 5528.935 kb on - strand, within AO353_25065at 5528.935 kb on - strandat 5528.956 kb on + strand, within AO353_25065at 5528.956 kb on + strand, within AO353_25065at 5528.956 kb on + strand, within AO353_25065at 5528.956 kb on + strand, within AO353_25065at 5528.957 kb on - strand, within AO353_25065at 5529.053 kb on + strandat 5529.054 kb on - strandat 5529.300 kb on + strand, within AO353_25070at 5529.300 kb on + strand, within AO353_25070at 5529.301 kb on - strand, within AO353_25070at 5529.351 kb on - strand, within AO353_25070at 5529.370 kb on + strand, within AO353_25070at 5529.371 kb on - strand, within AO353_25070at 5529.371 kb on - strandat 5529.467 kb on + strand, within AO353_25070at 5529.467 kb on + strand, within AO353_25070at 5529.468 kb on - strand, within AO353_25070at 5529.476 kb on + strand, within AO353_25070at 5529.504 kb on + strand, within AO353_25070at 5529.504 kb on + strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.505 kb on - strand, within AO353_25070at 5529.506 kb on + strand, within AO353_25070at 5529.685 kb on - strand, within AO353_25070at 5529.891 kb on - strand, within AO353_25070at 5529.891 kb on - strand, within AO353_25070at 5530.023 kb on + strand, within AO353_25070at 5530.023 kb on + strand, within AO353_25070at 5530.024 kb on - strand, within AO353_25070at 5530.024 kb on - strand, within AO353_25070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
5,526,799 + AO353_25060 0.18 +0.3
5,526,800 - AO353_25060 0.18 +0.6
5,526,800 - AO353_25060 0.18 +0.1
5,526,800 - AO353_25060 0.18 +0.8
5,526,800 - AO353_25060 0.18 +0.2
5,526,800 - AO353_25060 0.18 -0.2
5,527,079 - AO353_25060 0.48 +0.2
5,527,116 + AO353_25060 0.52 +0.5
5,527,200 + AO353_25060 0.61 +1.1
5,527,200 + AO353_25060 0.61 -0.5
5,527,201 - AO353_25060 0.61 +0.1
5,527,231 + AO353_25060 0.64 -0.2
5,527,232 - AO353_25060 0.64 +0.3
5,527,232 - AO353_25060 0.64 +0.4
5,527,232 - AO353_25060 0.64 +0.3
5,527,413 + AO353_25060 0.84 -0.5
5,527,413 + AO353_25060 0.84 +0.3
5,527,413 + AO353_25060 0.84 -1.0
5,527,413 + AO353_25060 0.84 -0.7
5,527,414 - AO353_25060 0.84 -0.1
5,527,594 + -0.2
5,527,663 + -1.7
5,527,664 - -0.3
5,527,664 - -0.1
5,527,664 - -1.6
5,527,677 + +1.8
5,527,677 + +1.3
5,527,677 + -0.9
5,527,677 + +0.7
5,527,677 + +0.7
5,527,678 - +0.1
5,527,678 - -0.7
5,527,678 - -0.4
5,527,678 - +0.5
5,527,678 - -0.1
5,527,748 + -0.4
5,527,748 + -0.1
5,527,748 + -1.1
5,527,749 - +0.9
5,527,749 - +1.0
5,527,749 - +0.3
5,527,749 - -0.5
5,527,751 + +0.0
5,527,751 + -0.0
5,527,751 + +0.5
5,527,752 - +0.6
5,527,752 - -0.1
5,527,752 - +0.3
5,527,752 - +2.3
5,527,752 - -0.7
5,527,752 - +0.1
5,527,754 + +0.9
5,527,754 + -0.7
5,527,754 + +0.5
5,527,754 + +0.6
5,527,755 - +0.6
5,527,755 - +0.4
5,527,755 - +0.4
5,527,755 - +0.0
5,527,755 - +0.8
5,527,812 + +0.7
5,527,887 + AO353_25065 0.10 +0.1
5,527,887 + AO353_25065 0.10 +0.7
5,527,887 + AO353_25065 0.10 -0.6
5,527,887 + AO353_25065 0.10 -0.1
5,527,887 + AO353_25065 0.10 -0.3
5,527,887 + AO353_25065 0.10 +0.4
5,527,887 + -0.3
5,527,887 + AO353_25065 0.10 +0.0
5,527,888 - +1.1
5,527,888 - AO353_25065 0.10 +1.3
5,527,888 - AO353_25065 0.10 +0.2
5,527,888 - AO353_25065 0.10 -0.2
5,527,888 - AO353_25065 0.10 -0.7
5,527,939 + AO353_25065 0.14 +0.6
5,527,940 - AO353_25065 0.14 +0.8
5,527,940 - AO353_25065 0.14 +0.7
5,527,940 - AO353_25065 0.14 -1.2
5,527,974 + AO353_25065 0.16 -0.3
5,527,974 + AO353_25065 0.16 +0.3
5,527,995 + AO353_25065 0.18 +0.9
5,527,995 + AO353_25065 0.18 +0.6
5,527,995 + AO353_25065 0.18 -0.2
5,527,995 + AO353_25065 0.18 +1.5
5,527,995 + AO353_25065 0.18 +0.9
5,527,995 + AO353_25065 0.18 +0.3
5,527,995 + AO353_25065 0.18 -0.6
5,527,995 + AO353_25065 0.18 +0.6
5,527,995 + AO353_25065 0.18 -0.5
5,527,995 + AO353_25065 0.18 +1.4
5,527,995 + AO353_25065 0.18 +1.1
5,527,995 + AO353_25065 0.18 +0.0
5,527,995 + +0.9
5,527,996 - AO353_25065 0.18 +1.4
5,527,996 - AO353_25065 0.18 +0.9
5,527,996 - AO353_25065 0.18 -0.8
5,527,996 - AO353_25065 0.18 +1.3
5,527,996 - AO353_25065 0.18 -0.1
5,527,996 - AO353_25065 0.18 +0.7
5,528,078 + AO353_25065 0.23 -0.4
5,528,078 + AO353_25065 0.23 -0.2
5,528,078 + AO353_25065 0.23 +1.5
5,528,079 - AO353_25065 0.23 -0.5
5,528,079 - AO353_25065 0.23 -0.7
5,528,130 + AO353_25065 0.27 +0.3
5,528,131 - AO353_25065 0.27 +0.1
5,528,131 - AO353_25065 0.27 -1.8
5,528,137 + AO353_25065 0.27 +0.0
5,528,177 - AO353_25065 0.30 -0.4
5,528,177 - AO353_25065 0.30 -0.7
5,528,231 - +1.6
5,528,277 + AO353_25065 0.37 +2.0
5,528,421 - AO353_25065 0.47 -1.5
5,528,421 - AO353_25065 0.47 +0.9
5,528,512 + AO353_25065 0.53 +0.6
5,528,512 + AO353_25065 0.53 +0.2
5,528,513 - AO353_25065 0.53 -1.5
5,528,513 - AO353_25065 0.53 -0.6
5,528,513 - AO353_25065 0.53 +0.0
5,528,523 + AO353_25065 0.54 +0.5
5,528,524 - AO353_25065 0.54 +0.5
5,528,587 + AO353_25065 0.58 +0.4
5,528,587 + AO353_25065 0.58 +0.4
5,528,668 + AO353_25065 0.64 +1.3
5,528,727 + AO353_25065 0.68 +0.1
5,528,727 + AO353_25065 0.68 -1.1
5,528,728 - AO353_25065 0.68 -0.1
5,528,728 - AO353_25065 0.68 -0.7
5,528,728 - AO353_25065 0.68 +1.5
5,528,803 + AO353_25065 0.73 +0.8
5,528,804 - AO353_25065 0.73 +0.5
5,528,804 - AO353_25065 0.73 +0.4
5,528,804 - AO353_25065 0.73 +1.9
5,528,907 - AO353_25065 0.81 +1.1
5,528,934 + AO353_25065 0.82 +2.6
5,528,934 + AO353_25065 0.82 +1.9
5,528,934 + AO353_25065 0.82 +1.9
5,528,935 - AO353_25065 0.82 +0.4
5,528,935 - -1.3
5,528,956 + AO353_25065 0.84 +1.9
5,528,956 + AO353_25065 0.84 +1.4
5,528,956 + AO353_25065 0.84 +1.6
5,528,956 + AO353_25065 0.84 +0.8
5,528,957 - AO353_25065 0.84 +0.3
5,529,053 + +2.4
5,529,054 - -0.4
5,529,300 + AO353_25070 0.11 +0.1
5,529,300 + AO353_25070 0.11 +1.1
5,529,301 - AO353_25070 0.11 -0.1
5,529,351 - AO353_25070 0.15 -0.8
5,529,370 + AO353_25070 0.17 +0.2
5,529,371 - AO353_25070 0.17 +0.4
5,529,371 - -0.7
5,529,467 + AO353_25070 0.25 +0.9
5,529,467 + AO353_25070 0.25 +0.0
5,529,468 - AO353_25070 0.25 -0.3
5,529,476 + AO353_25070 0.26 +2.3
5,529,504 + AO353_25070 0.28 -0.2
5,529,504 + AO353_25070 0.28 -0.0
5,529,505 - AO353_25070 0.28 +0.4
5,529,505 - AO353_25070 0.28 -0.4
5,529,505 - AO353_25070 0.28 -0.8
5,529,505 - AO353_25070 0.28 +0.7
5,529,505 - AO353_25070 0.28 -1.1
5,529,505 - AO353_25070 0.28 +2.3
5,529,505 - AO353_25070 0.28 +0.7
5,529,505 - AO353_25070 0.28 -0.1
5,529,505 - AO353_25070 0.28 +0.8
5,529,505 - AO353_25070 0.28 +0.3
5,529,505 - AO353_25070 0.28 +0.3
5,529,505 - AO353_25070 0.28 +1.0
5,529,506 + AO353_25070 0.28 +0.8
5,529,685 - AO353_25070 0.44 +0.1
5,529,891 - AO353_25070 0.62 +0.4
5,529,891 - AO353_25070 0.62 +0.3
5,530,023 + AO353_25070 0.73 +1.0
5,530,023 + AO353_25070 0.73 +1.2
5,530,024 - AO353_25070 0.73 -1.3
5,530,024 - AO353_25070 0.73 +0.6

Or see this region's nucleotide sequence