Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04405 and AO353_04410 are separated by 102 nucleotides AO353_04410 and AO353_04415 are separated by 99 nucleotides AO353_04415 and AO353_04420 are separated by 228 nucleotides
AO353_04405: AO353_04405 - MFS transporter, at 948,768 to 950,084
_04405
AO353_04410: AO353_04410 - phosphoribosylglycinamide formyltransferase, at 950,187 to 951,368
_04410
AO353_04415: AO353_04415 - preQ0 transporter, at 951,468 to 951,935
_04415
AO353_04420: AO353_04420 - Fe-S protein, at 952,164 to 952,379
_04420
Position (kb) 950
951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 949.278 kb on - strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.405 kb on - strand, within AO353_04405 at 949.501 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405 at 949.890 kb on - strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.909 kb on - strand, within AO353_04405 at 949.998 kb on + strand at 949.998 kb on + strand at 949.998 kb on + strand at 949.999 kb on - strand at 949.999 kb on - strand at 949.999 kb on - strand at 950.060 kb on + strand at 950.060 kb on + strand at 950.060 kb on + strand at 950.061 kb on - strand at 950.061 kb on - strand at 950.085 kb on + strand at 950.085 kb on + strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.116 kb on - strand at 950.116 kb on - strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.160 kb on + strand at 950.161 kb on - strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.189 kb on - strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.197 kb on - strand at 950.197 kb on - strand at 950.197 kb on - strand at 950.778 kb on - strand, within AO353_04410 at 950.861 kb on + strand, within AO353_04410 at 950.961 kb on - strand, within AO353_04410 at 950.975 kb on - strand, within AO353_04410 at 951.134 kb on + strand, within AO353_04410 at 951.135 kb on - strand, within AO353_04410 at 951.324 kb on + strand at 951.446 kb on + strand at 951.446 kb on + strand at 951.446 kb on + strand at 951.447 kb on - strand at 951.447 kb on - strand at 951.447 kb on - strand at 951.605 kb on + strand, within AO353_04415 at 951.633 kb on + strand, within AO353_04415 at 951.634 kb on - strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.666 kb on - strand, within AO353_04415 at 951.751 kb on + strand, within AO353_04415 at 951.751 kb on + strand, within AO353_04415 at 951.752 kb on - strand, within AO353_04415 at 951.752 kb on - strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.832 kb on - strand, within AO353_04415 at 951.832 kb on - strand, within AO353_04415 at 951.889 kb on + strand at 951.889 kb on + strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.948 kb on + strand at 951.949 kb on - strand at 951.972 kb on + strand at 951.972 kb on + strand at 951.972 kb on + strand at 951.973 kb on - strand at 951.973 kb on - strand at 951.973 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.150 kb on + strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.169 kb on + strand at 952.263 kb on - strand, within AO353_04420 at 952.263 kb on - strand, within AO353_04420 at 952.313 kb on + strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.356 kb on + strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 949,278 - AO353_04405 0.39 +0.7 949,404 + AO353_04405 0.48 -1.1 949,404 + AO353_04405 0.48 -1.5 949,404 + AO353_04405 0.48 +0.5 949,404 + AO353_04405 0.48 +0.3 949,405 - AO353_04405 0.48 +0.2 949,501 - AO353_04405 0.56 +0.8 949,558 - AO353_04405 0.60 -0.7 949,558 - AO353_04405 0.60 -1.1 949,558 - AO353_04405 0.60 -0.4 949,584 + AO353_04405 0.62 -0.8 949,584 + AO353_04405 0.62 +0.9 949,584 + AO353_04405 0.62 -0.8 949,585 - AO353_04405 0.62 -2.5 949,585 - AO353_04405 0.62 -0.2 949,585 - AO353_04405 0.62 -0.4 949,606 - AO353_04405 0.64 -1.9 949,606 - AO353_04405 0.64 +0.3 949,890 - AO353_04405 0.85 -0.7 949,908 + AO353_04405 0.87 +0.5 949,908 + AO353_04405 0.87 -1.5 949,908 + AO353_04405 0.87 +0.2 949,908 + AO353_04405 0.87 -0.2 949,908 + AO353_04405 0.87 -0.4 949,908 + AO353_04405 0.87 +0.3 949,908 + AO353_04405 0.87 -0.2 949,909 - AO353_04405 0.87 +0.2 949,998 + -0.2 949,998 + +0.5 949,998 + +1.1 949,999 - -0.7 949,999 - +0.0 949,999 - +0.4 950,060 + +0.5 950,060 + -0.1 950,060 + -0.8 950,061 - +0.2 950,061 - +0.5 950,085 + -0.5 950,085 + +0.1 950,086 - -1.1 950,086 - +0.2 950,086 - +1.3 950,086 - -0.2 950,116 - -0.6 950,116 - -0.1 950,121 + +0.7 950,121 + -0.0 950,121 + +0.3 950,121 + -1.9 950,121 + -0.2 950,121 + -0.1 950,121 + -0.8 950,121 + +0.9 950,121 + +0.4 950,121 + -0.8 950,121 + -0.3 950,121 + +0.1 950,122 - +0.7 950,122 - +0.6 950,122 - -0.1 950,122 - +0.7 950,122 - +0.3 950,160 + -0.3 950,161 - +0.3 950,188 + +0.9 950,188 + -0.4 950,188 + -0.5 950,188 + +0.1 950,188 + -0.4 950,189 - -0.1 950,196 + -0.2 950,196 + +1.9 950,196 + +0.4 950,196 + +0.6 950,196 + +0.5 950,197 - -1.4 950,197 - +0.1 950,197 - -0.4 950,778 - AO353_04410 0.50 -0.3 950,861 + AO353_04410 0.57 +0.2 950,961 - AO353_04410 0.65 -1.2 950,975 - AO353_04410 0.67 -1.1 951,134 + AO353_04410 0.80 -1.1 951,135 - AO353_04410 0.80 -0.4 951,324 + -1.4 951,446 + +0.8 951,446 + -0.1 951,446 + -0.1 951,447 - +0.6 951,447 - +0.7 951,447 - -0.3 951,605 + AO353_04415 0.29 -0.4 951,633 + AO353_04415 0.35 +1.3 951,634 - AO353_04415 0.35 -0.3 951,665 + AO353_04415 0.42 +1.2 951,665 + AO353_04415 0.42 -0.5 951,665 + AO353_04415 0.42 -0.4 951,666 - AO353_04415 0.42 +0.3 951,751 + AO353_04415 0.60 +0.9 951,751 + AO353_04415 0.60 +0.5 951,752 - AO353_04415 0.61 +0.3 951,752 - AO353_04415 0.61 -0.1 951,831 + AO353_04415 0.78 -1.2 951,831 + AO353_04415 0.78 -0.5 951,831 + AO353_04415 0.78 +1.2 951,831 + AO353_04415 0.78 +1.2 951,831 + AO353_04415 0.78 -0.1 951,832 - AO353_04415 0.78 +0.4 951,832 - AO353_04415 0.78 +0.3 951,889 + +0.6 951,889 + +1.2 951,890 - -1.1 951,890 - -0.6 951,890 - -1.4 951,890 - +0.2 951,916 + -1.2 951,916 + -0.1 951,916 + +1.2 951,916 + +0.6 951,916 + +1.9 951,916 + -0.0 951,916 + -0.3 951,916 + -0.4 951,916 + +0.2 951,916 + -0.4 951,917 - -0.2 951,917 - +0.9 951,917 - +1.2 951,917 - -2.8 951,917 - +1.0 951,917 - -0.9 951,948 + +0.3 951,949 - -0.1 951,972 + +0.6 951,972 + -0.9 951,972 + +0.1 951,973 - +0.6 951,973 - +0.5 951,973 - -0.3 952,070 - +0.1 952,070 - -1.1 952,070 - -0.6 952,070 - +0.6 952,150 + -0.2 952,151 - -0.0 952,151 - +0.1 952,151 - +0.1 952,169 + -0.8 952,263 - AO353_04420 0.46 +0.3 952,263 - AO353_04420 0.46 +0.2 952,313 + AO353_04420 0.69 -1.1 952,314 - AO353_04420 0.69 +0.1 952,314 - AO353_04420 0.69 +0.3 952,314 - AO353_04420 0.69 +0.0 952,356 + AO353_04420 0.89 -0.2 952,357 - AO353_04420 0.89 -0.2 952,357 - AO353_04420 0.89 -0.9
Or see this region's nucleotide sequence