Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04120 and AO353_04125 are separated by 74 nucleotides AO353_04125 and AO353_04130 are separated by 315 nucleotides AO353_04130 and AO353_04135 are separated by 199 nucleotides AO353_04135 and AO353_04140 are separated by 106 nucleotides
AO353_04120: AO353_04120 - ribonuclease T, at 884,654 to 885,328
_04120
AO353_04125: AO353_04125 - alkyl hydroperoxide reductase, at 885,403 to 886,005
_04125
AO353_04130: AO353_04130 - (2Fe-2S)-binding protein, at 886,321 to 886,539
_04130
AO353_04135: AO353_04135 - bacterioferritin, at 886,739 to 887,212
_04135
AO353_04140: AO353_04140 - glutaredoxin, at 887,319 to 887,660
_04140
Position (kb) 886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 885.386 kb on + strand at 885.386 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.404 kb on + strand at 885.405 kb on - strand at 885.405 kb on - strand at 885.405 kb on - strand at 885.432 kb on - strand at 885.662 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.704 kb on + strand, within AO353_04125 at 885.705 kb on - strand, within AO353_04125 at 885.705 kb on - strand, within AO353_04125 at 885.705 kb on - strand, within AO353_04125 at 885.705 kb on - strand at 885.705 kb on - strand, within AO353_04125 at 885.705 kb on - strand, within AO353_04125 at 885.705 kb on - strand, within AO353_04125 at 885.878 kb on + strand, within AO353_04125 at 885.878 kb on + strand, within AO353_04125 at 885.878 kb on + strand, within AO353_04125 at 885.878 kb on + strand, within AO353_04125 at 885.878 kb on + strand, within AO353_04125 at 885.879 kb on - strand, within AO353_04125 at 885.879 kb on - strand, within AO353_04125 at 885.896 kb on + strand, within AO353_04125 at 885.896 kb on + strand, within AO353_04125 at 885.896 kb on + strand, within AO353_04125 at 885.896 kb on + strand, within AO353_04125 at 885.897 kb on - strand, within AO353_04125 at 885.897 kb on - strand, within AO353_04125 at 885.897 kb on - strand, within AO353_04125 at 885.897 kb on - strand, within AO353_04125 at 885.897 kb on - strand, within AO353_04125 at 885.897 kb on - strand, within AO353_04125 at 885.897 kb on - strand, within AO353_04125 at 885.956 kb on - strand at 885.956 kb on - strand at 885.992 kb on - strand at 885.997 kb on + strand at 885.998 kb on - strand at 885.998 kb on - strand at 886.010 kb on + strand at 886.010 kb on + strand at 886.011 kb on - strand at 886.011 kb on - strand at 886.063 kb on - strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.111 kb on + strand at 886.112 kb on - strand at 886.112 kb on - strand at 886.112 kb on - strand at 886.112 kb on - strand at 886.112 kb on - strand at 886.112 kb on - strand at 886.112 kb on - strand at 886.112 kb on - strand at 886.145 kb on + strand at 886.146 kb on - strand at 886.146 kb on - strand at 886.146 kb on - strand at 886.199 kb on + strand at 886.199 kb on + strand at 886.199 kb on + strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.200 kb on - strand at 886.298 kb on + strand at 886.320 kb on + strand at 886.320 kb on + strand at 886.320 kb on + strand at 886.320 kb on + strand at 886.320 kb on + strand at 886.320 kb on + strand at 886.320 kb on + strand at 886.320 kb on + strand at 886.321 kb on - strand at 886.321 kb on - strand at 886.321 kb on - strand at 886.321 kb on - strand at 886.321 kb on - strand at 886.321 kb on - strand at 886.321 kb on - strand at 886.321 kb on - strand at 886.321 kb on - strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.324 kb on + strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.325 kb on - strand at 886.375 kb on + strand, within AO353_04130 at 886.375 kb on + strand, within AO353_04130 at 886.375 kb on + strand, within AO353_04130 at 886.375 kb on + strand, within AO353_04130 at 886.375 kb on + strand, within AO353_04130 at 886.376 kb on - strand, within AO353_04130 at 886.376 kb on - strand, within AO353_04130 at 886.376 kb on - strand, within AO353_04130 at 886.376 kb on - strand, within AO353_04130 at 886.376 kb on - strand, within AO353_04130 at 886.376 kb on - strand, within AO353_04130 at 886.376 kb on - strand, within AO353_04130 at 886.393 kb on + strand, within AO353_04130 at 886.394 kb on - strand, within AO353_04130 at 886.403 kb on + strand, within AO353_04130 at 886.404 kb on - strand, within AO353_04130 at 886.493 kb on + strand, within AO353_04130 at 886.493 kb on + strand, within AO353_04130 at 886.493 kb on + strand, within AO353_04130 at 886.521 kb on - strand at 886.537 kb on + strand at 886.537 kb on + strand at 886.537 kb on + strand at 886.538 kb on - strand at 886.538 kb on - strand at 886.541 kb on + strand at 886.541 kb on + strand at 886.541 kb on + strand at 886.542 kb on - strand at 886.582 kb on - strand at 886.589 kb on + strand at 886.590 kb on - strand at 886.652 kb on + strand at 886.653 kb on - strand at 886.653 kb on - strand at 886.655 kb on + strand at 886.656 kb on - strand at 886.662 kb on + strand at 886.667 kb on + strand at 886.667 kb on + strand at 886.667 kb on + strand at 886.668 kb on - strand at 886.668 kb on - strand at 886.709 kb on + strand at 886.709 kb on + strand at 886.709 kb on + strand at 886.709 kb on + strand at 886.709 kb on + strand at 886.709 kb on + strand at 886.709 kb on + strand at 886.712 kb on + strand at 886.712 kb on + strand at 886.712 kb on + strand at 886.712 kb on + strand at 886.713 kb on - strand at 886.718 kb on - strand at 886.718 kb on - strand at 886.721 kb on + strand at 886.721 kb on + strand at 886.721 kb on + strand at 886.722 kb on - strand at 886.722 kb on - strand at 886.722 kb on - strand at 886.811 kb on + strand, within AO353_04135 at 886.811 kb on + strand, within AO353_04135 at 886.811 kb on + strand, within AO353_04135 at 886.812 kb on - strand, within AO353_04135 at 886.812 kb on - strand, within AO353_04135 at 886.832 kb on + strand, within AO353_04135 at 886.832 kb on + strand, within AO353_04135 at 886.832 kb on + strand, within AO353_04135 at 886.832 kb on + strand, within AO353_04135 at 886.833 kb on - strand, within AO353_04135 at 886.833 kb on - strand, within AO353_04135 at 886.833 kb on - strand, within AO353_04135 at 886.833 kb on - strand, within AO353_04135 at 886.833 kb on - strand, within AO353_04135 at 886.833 kb on - strand, within AO353_04135 at 886.871 kb on + strand, within AO353_04135 at 886.872 kb on - strand, within AO353_04135 at 886.872 kb on - strand, within AO353_04135 at 887.104 kb on + strand, within AO353_04135 at 887.104 kb on + strand, within AO353_04135 at 887.104 kb on + strand, within AO353_04135 at 887.104 kb on + strand, within AO353_04135 at 887.104 kb on + strand, within AO353_04135 at 887.105 kb on - strand, within AO353_04135 at 887.128 kb on + strand, within AO353_04135 at 887.128 kb on + strand, within AO353_04135 at 887.128 kb on + strand, within AO353_04135 at 887.128 kb on + strand, within AO353_04135 at 887.129 kb on - strand, within AO353_04135 at 887.129 kb on - strand, within AO353_04135 at 887.129 kb on - strand, within AO353_04135 at 887.129 kb on - strand, within AO353_04135 at 887.164 kb on + strand, within AO353_04135 at 887.164 kb on + strand, within AO353_04135 at 887.183 kb on + strand at 887.183 kb on + strand at 887.183 kb on + strand at 887.184 kb on - strand at 887.184 kb on - strand at 887.184 kb on - strand at 887.184 kb on - strand at 887.210 kb on + strand at 887.211 kb on - strand at 887.217 kb on + strand at 887.217 kb on + strand at 887.217 kb on + strand at 887.217 kb on + strand at 887.217 kb on + strand at 887.217 kb on + strand at 887.218 kb on - strand at 887.218 kb on - strand at 887.218 kb on - strand at 887.218 kb on - strand at 887.218 kb on - strand at 887.239 kb on + strand at 887.240 kb on - strand at 887.258 kb on - strand at 887.276 kb on + strand at 887.276 kb on + strand at 887.277 kb on - strand at 887.277 kb on - strand at 887.277 kb on - strand at 887.313 kb on + strand at 887.315 kb on + strand at 887.315 kb on + strand at 887.315 kb on + strand at 887.315 kb on + strand at 887.315 kb on + strand at 887.315 kb on + strand at 887.315 kb on + strand at 887.316 kb on - strand at 887.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 885,386 + +0.1 885,386 + -1.7 885,404 + +0.9 885,404 + +0.7 885,404 + -0.0 885,404 + -0.1 885,404 + -0.1 885,404 + +0.0 885,405 - -0.1 885,405 - -1.5 885,405 - -0.4 885,432 - -0.4 885,662 + AO353_04125 0.43 +0.4 885,704 + AO353_04125 0.50 +0.1 885,704 + AO353_04125 0.50 +0.5 885,704 + AO353_04125 0.50 -0.2 885,704 + AO353_04125 0.50 -1.1 885,704 + AO353_04125 0.50 -0.1 885,704 + AO353_04125 0.50 -0.1 885,704 + AO353_04125 0.50 +0.5 885,704 + AO353_04125 0.50 +1.0 885,704 + AO353_04125 0.50 -0.4 885,704 + AO353_04125 0.50 -0.4 885,705 - AO353_04125 0.50 +0.5 885,705 - AO353_04125 0.50 +0.2 885,705 - AO353_04125 0.50 -0.6 885,705 - -1.1 885,705 - AO353_04125 0.50 +0.4 885,705 - AO353_04125 0.50 -1.8 885,705 - AO353_04125 0.50 -0.3 885,878 + AO353_04125 0.79 +0.2 885,878 + AO353_04125 0.79 +0.2 885,878 + AO353_04125 0.79 +0.2 885,878 + AO353_04125 0.79 -0.2 885,878 + AO353_04125 0.79 -0.4 885,879 - AO353_04125 0.79 +0.2 885,879 - AO353_04125 0.79 +0.2 885,896 + AO353_04125 0.82 -0.5 885,896 + AO353_04125 0.82 -0.8 885,896 + AO353_04125 0.82 -0.1 885,896 + AO353_04125 0.82 -0.2 885,897 - AO353_04125 0.82 +0.8 885,897 - AO353_04125 0.82 +0.3 885,897 - AO353_04125 0.82 +1.2 885,897 - AO353_04125 0.82 +0.2 885,897 - AO353_04125 0.82 +0.0 885,897 - AO353_04125 0.82 +0.6 885,897 - AO353_04125 0.82 -0.8 885,956 - -0.6 885,956 - -0.1 885,992 - -0.8 885,997 + -0.0 885,998 - +0.1 885,998 - -0.6 886,010 + -0.1 886,010 + -0.6 886,011 - -0.2 886,011 - +0.9 886,063 - +0.5 886,111 + +0.1 886,111 + -1.1 886,111 + +0.8 886,111 + -0.0 886,111 + +0.3 886,111 + -0.9 886,111 + -2.2 886,111 + +0.1 886,111 + -0.3 886,111 + +0.4 886,111 + -0.2 886,112 - -0.6 886,112 - -1.8 886,112 - -1.0 886,112 - -0.7 886,112 - -0.1 886,112 - -0.2 886,112 - -0.2 886,112 - -0.3 886,145 + -0.0 886,146 - -0.8 886,146 - +0.5 886,146 - -0.6 886,199 + -0.1 886,199 + -0.8 886,199 + -0.4 886,200 - -0.3 886,200 - +0.0 886,200 - +1.7 886,200 - -1.4 886,200 - -0.9 886,200 - -0.1 886,200 - +1.1 886,200 - -0.6 886,200 - +1.0 886,200 - +0.6 886,200 - -0.3 886,298 + -1.1 886,320 + -0.0 886,320 + -1.6 886,320 + -0.9 886,320 + -0.7 886,320 + -1.3 886,320 + -1.8 886,320 + +0.4 886,320 + +0.9 886,321 - -1.3 886,321 - -0.1 886,321 - -1.0 886,321 - -0.9 886,321 - -0.4 886,321 - -1.3 886,321 - -0.3 886,321 - -2.1 886,321 - +0.5 886,324 + +0.1 886,324 + +0.1 886,324 + +0.0 886,324 + -0.8 886,324 + -0.7 886,324 + -0.3 886,324 + -1.6 886,324 + -1.6 886,324 + -0.9 886,324 + +0.6 886,324 + +0.4 886,324 + -0.7 886,325 - -0.7 886,325 - -0.6 886,325 - -1.4 886,325 - -0.8 886,325 - -0.0 886,325 - -0.9 886,325 - -0.9 886,325 - -0.2 886,325 - -0.1 886,325 - +0.2 886,325 - +0.2 886,325 - +0.2 886,325 - -1.2 886,325 - -1.7 886,325 - +0.9 886,325 - -0.9 886,325 - -1.3 886,325 - +0.1 886,375 + AO353_04130 0.25 -1.7 886,375 + AO353_04130 0.25 -0.8 886,375 + AO353_04130 0.25 -1.5 886,375 + AO353_04130 0.25 -0.8 886,375 + AO353_04130 0.25 -0.9 886,376 - AO353_04130 0.25 -0.2 886,376 - AO353_04130 0.25 -1.1 886,376 - AO353_04130 0.25 -3.0 886,376 - AO353_04130 0.25 -0.8 886,376 - AO353_04130 0.25 -1.5 886,376 - AO353_04130 0.25 -1.0 886,376 - AO353_04130 0.25 -0.4 886,393 + AO353_04130 0.33 +1.2 886,394 - AO353_04130 0.33 -1.2 886,403 + AO353_04130 0.37 -1.5 886,404 - AO353_04130 0.38 -0.1 886,493 + AO353_04130 0.79 -1.0 886,493 + AO353_04130 0.79 -0.0 886,493 + AO353_04130 0.79 -0.9 886,521 - -1.2 886,537 + +0.6 886,537 + +0.1 886,537 + +0.3 886,538 - -0.2 886,538 - +0.1 886,541 + -1.7 886,541 + +0.3 886,541 + -0.6 886,542 - +0.0 886,582 - -0.9 886,589 + -0.6 886,590 - +1.0 886,652 + +0.1 886,653 - -0.9 886,653 - -0.3 886,655 + -0.4 886,656 - -1.3 886,662 + +0.8 886,667 + -0.9 886,667 + -0.6 886,667 + +0.5 886,668 - +0.9 886,668 - -0.1 886,709 + +0.6 886,709 + -0.2 886,709 + -1.3 886,709 + -0.6 886,709 + +0.9 886,709 + +0.2 886,709 + +0.7 886,712 + -1.1 886,712 + -0.2 886,712 + -0.8 886,712 + -0.1 886,713 - +0.5 886,718 - -0.2 886,718 - -0.5 886,721 + -0.8 886,721 + -0.9 886,721 + -0.0 886,722 - -0.4 886,722 - -0.1 886,722 - +0.2 886,811 + AO353_04135 0.15 -0.4 886,811 + AO353_04135 0.15 +0.1 886,811 + AO353_04135 0.15 +0.3 886,812 - AO353_04135 0.15 -0.7 886,812 - AO353_04135 0.15 -1.1 886,832 + AO353_04135 0.20 -0.8 886,832 + AO353_04135 0.20 +0.1 886,832 + AO353_04135 0.20 +0.2 886,832 + AO353_04135 0.20 -1.3 886,833 - AO353_04135 0.20 -0.2 886,833 - AO353_04135 0.20 -0.0 886,833 - AO353_04135 0.20 -1.8 886,833 - AO353_04135 0.20 -1.1 886,833 - AO353_04135 0.20 -0.7 886,833 - AO353_04135 0.20 +0.2 886,871 + AO353_04135 0.28 -1.4 886,872 - AO353_04135 0.28 +2.3 886,872 - AO353_04135 0.28 -1.4 887,104 + AO353_04135 0.77 -1.2 887,104 + AO353_04135 0.77 -1.9 887,104 + AO353_04135 0.77 +1.1 887,104 + AO353_04135 0.77 -0.6 887,104 + AO353_04135 0.77 +0.2 887,105 - AO353_04135 0.77 -1.6 887,128 + AO353_04135 0.82 -0.8 887,128 + AO353_04135 0.82 -0.9 887,128 + AO353_04135 0.82 -0.1 887,128 + AO353_04135 0.82 +0.3 887,129 - AO353_04135 0.82 -0.3 887,129 - AO353_04135 0.82 -0.5 887,129 - AO353_04135 0.82 +0.4 887,129 - AO353_04135 0.82 +0.0 887,164 + AO353_04135 0.90 -0.4 887,164 + AO353_04135 0.90 -0.8 887,183 + -0.0 887,183 + +0.6 887,183 + +0.2 887,184 - -0.1 887,184 - -1.6 887,184 - -0.5 887,184 - -0.2 887,210 + -1.3 887,211 - -0.1 887,217 + +0.8 887,217 + -1.8 887,217 + +0.3 887,217 + +1.3 887,217 + +0.6 887,217 + -0.1 887,218 - -0.8 887,218 - +0.8 887,218 - -0.4 887,218 - -0.9 887,218 - -0.6 887,239 + +0.1 887,240 - +0.1 887,258 - -1.3 887,276 + +0.3 887,276 + -0.8 887,277 - -0.6 887,277 - +0.9 887,277 - +0.5 887,313 + -1.2 887,315 + -0.3 887,315 + +0.3 887,315 + +1.9 887,315 + -0.4 887,315 + -1.3 887,315 + +0.7 887,315 + +0.3 887,316 - -0.8 887,316 - +0.3
Or see this region's nucleotide sequence