Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04100

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_04095 and AO353_04100 are separated by 482 nucleotidesAO353_04100 and AO353_04105 are separated by 160 nucleotides AO353_04095: AO353_04095 - LuxR family transcriptional regulator, at 879,237 to 879,863 _04095 AO353_04100: AO353_04100 - hypothetical protein, at 880,346 to 881,038 _04100 AO353_04105: AO353_04105 - argininosuccinate synthase, at 881,199 to 882,416 _04105 Position (kb) 880 881 882Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 879.396 kb on + strand, within AO353_04095at 879.396 kb on + strand, within AO353_04095at 879.397 kb on - strand, within AO353_04095at 879.397 kb on - strand, within AO353_04095at 879.397 kb on - strand, within AO353_04095at 879.397 kb on - strand, within AO353_04095at 879.397 kb on - strand, within AO353_04095at 879.397 kb on - strand, within AO353_04095at 879.397 kb on - strand, within AO353_04095at 879.397 kb on - strand, within AO353_04095at 879.397 kb on - strand, within AO353_04095at 879.496 kb on + strand, within AO353_04095at 879.496 kb on + strand, within AO353_04095at 879.496 kb on + strand, within AO353_04095at 879.496 kb on + strand, within AO353_04095at 879.497 kb on - strand, within AO353_04095at 879.497 kb on - strand, within AO353_04095at 879.497 kb on - strand, within AO353_04095at 879.497 kb on - strand, within AO353_04095at 879.497 kb on - strand, within AO353_04095at 879.497 kb on - strand, within AO353_04095at 879.497 kb on - strand, within AO353_04095at 879.500 kb on + strand, within AO353_04095at 879.500 kb on + strand, within AO353_04095at 879.500 kb on + strand, within AO353_04095at 879.500 kb on + strand, within AO353_04095at 879.500 kb on + strand, within AO353_04095at 879.500 kb on + strand, within AO353_04095at 879.501 kb on - strand, within AO353_04095at 879.501 kb on - strand, within AO353_04095at 879.501 kb on - strand, within AO353_04095at 879.501 kb on - strand, within AO353_04095at 879.501 kb on - strand, within AO353_04095at 879.501 kb on - strand, within AO353_04095at 879.501 kb on - strand, within AO353_04095at 879.501 kb on - strand, within AO353_04095at 879.502 kb on + strand, within AO353_04095at 879.513 kb on + strand, within AO353_04095at 879.513 kb on + strand, within AO353_04095at 879.513 kb on + strand, within AO353_04095at 879.514 kb on - strand, within AO353_04095at 879.514 kb on - strand, within AO353_04095at 879.514 kb on - strand, within AO353_04095at 879.514 kb on - strand, within AO353_04095at 879.514 kb on - strand, within AO353_04095at 879.514 kb on - strand, within AO353_04095at 879.565 kb on + strand, within AO353_04095at 879.565 kb on + strand, within AO353_04095at 879.566 kb on - strand, within AO353_04095at 879.671 kb on + strand, within AO353_04095at 879.711 kb on + strand, within AO353_04095at 879.804 kb on + strandat 879.805 kb on - strandat 879.809 kb on + strandat 879.809 kb on + strandat 879.809 kb on + strandat 879.809 kb on + strandat 879.809 kb on + strandat 879.809 kb on + strandat 879.809 kb on + strandat 879.810 kb on - strandat 879.810 kb on - strandat 879.810 kb on - strandat 879.810 kb on - strandat 879.810 kb on - strandat 879.810 kb on - strandat 879.813 kb on + strandat 879.813 kb on + strandat 879.813 kb on + strandat 879.814 kb on - strandat 879.814 kb on - strandat 879.814 kb on - strandat 879.814 kb on - strandat 879.814 kb on - strandat 879.814 kb on - strandat 879.857 kb on + strandat 879.857 kb on + strandat 879.857 kb on + strandat 879.858 kb on - strandat 879.908 kb on + strandat 879.913 kb on + strandat 879.954 kb on - strandat 879.972 kb on + strandat 880.031 kb on - strandat 880.080 kb on + strandat 880.080 kb on + strandat 880.099 kb on - strandat 880.139 kb on - strandat 880.139 kb on - strandat 880.291 kb on - strandat 880.320 kb on - strandat 880.320 kb on - strandat 880.466 kb on + strand, within AO353_04100at 880.466 kb on + strand, within AO353_04100at 880.467 kb on - strand, within AO353_04100at 880.467 kb on - strand, within AO353_04100at 880.467 kb on - strand, within AO353_04100at 880.496 kb on + strand, within AO353_04100at 880.497 kb on - strand, within AO353_04100at 880.517 kb on - strand, within AO353_04100at 880.531 kb on + strand, within AO353_04100at 880.536 kb on - strand, within AO353_04100at 880.547 kb on + strand, within AO353_04100at 880.636 kb on + strand, within AO353_04100at 880.684 kb on + strand, within AO353_04100at 880.694 kb on + strand, within AO353_04100at 880.727 kb on + strand, within AO353_04100at 880.727 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.729 kb on + strand, within AO353_04100at 880.750 kb on + strand, within AO353_04100at 880.750 kb on + strand, within AO353_04100at 880.751 kb on - strand, within AO353_04100at 880.751 kb on - strand, within AO353_04100at 880.786 kb on - strand, within AO353_04100at 880.985 kb on + strandat 880.996 kb on + strandat 881.006 kb on - strandat 881.086 kb on + strandat 881.162 kb on - strandat 881.285 kb on - strandat 881.285 kb on - strandat 881.285 kb on - strandat 881.309 kb on + strandat 881.310 kb on - strandat 881.310 kb on - strandat 881.310 kb on - strandat 881.374 kb on + strand, within AO353_04105at 881.470 kb on + strand, within AO353_04105at 881.470 kb on + strand, within AO353_04105at 881.471 kb on - strand, within AO353_04105at 881.471 kb on - strand, within AO353_04105at 881.485 kb on + strand, within AO353_04105at 881.485 kb on + strand, within AO353_04105at 881.485 kb on + strand, within AO353_04105at 881.485 kb on + strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.486 kb on - strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.489 kb on + strand, within AO353_04105at 881.490 kb on - strand, within AO353_04105at 881.490 kb on - strand, within AO353_04105at 881.490 kb on - strandat 881.590 kb on + strand, within AO353_04105at 881.617 kb on + strand, within AO353_04105at 881.740 kb on + strand, within AO353_04105at 881.740 kb on + strand, within AO353_04105at 881.756 kb on - strand, within AO353_04105at 881.756 kb on - strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.804 kb on + strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.805 kb on - strand, within AO353_04105at 881.828 kb on + strand, within AO353_04105at 881.828 kb on + strand, within AO353_04105at 881.829 kb on - strand, within AO353_04105at 881.852 kb on - strand, within AO353_04105at 881.938 kb on + strand, within AO353_04105at 881.938 kb on + strand, within AO353_04105at 882.017 kb on - strand, within AO353_04105at 882.017 kb on - strand, within AO353_04105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
879,396 + AO353_04095 0.25 +0.3
879,396 + AO353_04095 0.25 +0.0
879,397 - AO353_04095 0.26 +1.3
879,397 - AO353_04095 0.26 -0.1
879,397 - AO353_04095 0.26 -1.3
879,397 - AO353_04095 0.26 +0.3
879,397 - AO353_04095 0.26 +0.7
879,397 - AO353_04095 0.26 -1.1
879,397 - AO353_04095 0.26 +0.3
879,397 - AO353_04095 0.26 -0.3
879,397 - AO353_04095 0.26 -0.6
879,496 + AO353_04095 0.41 +0.4
879,496 + AO353_04095 0.41 -0.1
879,496 + AO353_04095 0.41 -0.7
879,496 + AO353_04095 0.41 +0.7
879,497 - AO353_04095 0.41 +0.4
879,497 - AO353_04095 0.41 -0.5
879,497 - AO353_04095 0.41 -0.3
879,497 - AO353_04095 0.41 +0.9
879,497 - AO353_04095 0.41 +0.4
879,497 - AO353_04095 0.41 -0.2
879,497 - AO353_04095 0.41 -0.0
879,500 + AO353_04095 0.42 +1.6
879,500 + AO353_04095 0.42 -1.5
879,500 + AO353_04095 0.42 +0.0
879,500 + AO353_04095 0.42 +0.2
879,500 + AO353_04095 0.42 -0.4
879,500 + AO353_04095 0.42 +0.7
879,501 - AO353_04095 0.42 +1.6
879,501 - AO353_04095 0.42 -0.9
879,501 - AO353_04095 0.42 +0.9
879,501 - AO353_04095 0.42 +0.9
879,501 - AO353_04095 0.42 +0.7
879,501 - AO353_04095 0.42 +0.2
879,501 - AO353_04095 0.42 +0.1
879,501 - AO353_04095 0.42 -0.9
879,502 + AO353_04095 0.42 +1.9
879,513 + AO353_04095 0.44 +0.5
879,513 + AO353_04095 0.44 +0.1
879,513 + AO353_04095 0.44 +0.2
879,514 - AO353_04095 0.44 -0.9
879,514 - AO353_04095 0.44 -0.4
879,514 - AO353_04095 0.44 -0.4
879,514 - AO353_04095 0.44 -0.0
879,514 - AO353_04095 0.44 -0.1
879,514 - AO353_04095 0.44 -1.1
879,565 + AO353_04095 0.52 -0.9
879,565 + AO353_04095 0.52 +0.3
879,566 - AO353_04095 0.52 +0.8
879,671 + AO353_04095 0.69 -1.7
879,711 + AO353_04095 0.76 -0.3
879,804 + +0.2
879,805 - +0.3
879,809 + -0.2
879,809 + +0.0
879,809 + +0.2
879,809 + +0.1
879,809 + +0.2
879,809 + -0.3
879,809 + +0.4
879,810 - -0.1
879,810 - +0.2
879,810 - -0.3
879,810 - -0.0
879,810 - +0.6
879,810 - +0.3
879,813 + -1.3
879,813 + -1.4
879,813 + +0.8
879,814 - -0.2
879,814 - -1.2
879,814 - +0.3
879,814 - +0.1
879,814 - -0.5
879,814 - +0.9
879,857 + +0.5
879,857 + -0.5
879,857 + +0.3
879,858 - +0.1
879,908 + +0.5
879,913 + +0.2
879,954 - -0.4
879,972 + -0.9
880,031 - +0.9
880,080 + -1.1
880,080 + -3.1
880,099 - -0.3
880,139 - -0.7
880,139 - -0.4
880,291 - +0.3
880,320 - +0.3
880,320 - +0.5
880,466 + AO353_04100 0.17 -0.1
880,466 + AO353_04100 0.17 -0.3
880,467 - AO353_04100 0.17 +0.7
880,467 - AO353_04100 0.17 +0.4
880,467 - AO353_04100 0.17 +0.3
880,496 + AO353_04100 0.22 -0.1
880,497 - AO353_04100 0.22 +0.8
880,517 - AO353_04100 0.25 +0.5
880,531 + AO353_04100 0.27 -0.7
880,536 - AO353_04100 0.27 +1.6
880,547 + AO353_04100 0.29 +0.7
880,636 + AO353_04100 0.42 +0.0
880,684 + AO353_04100 0.49 +0.2
880,694 + AO353_04100 0.50 +0.9
880,727 + AO353_04100 0.55 -1.0
880,727 + AO353_04100 0.55 -1.0
880,729 + AO353_04100 0.55 +0.3
880,729 + AO353_04100 0.55 -1.7
880,729 + AO353_04100 0.55 +0.7
880,729 + AO353_04100 0.55 -0.1
880,729 + AO353_04100 0.55 +0.6
880,729 + AO353_04100 0.55 +0.3
880,729 + AO353_04100 0.55 -1.4
880,729 + AO353_04100 0.55 +1.1
880,750 + AO353_04100 0.58 +1.9
880,750 + AO353_04100 0.58 +0.7
880,751 - AO353_04100 0.58 +0.9
880,751 - AO353_04100 0.58 +2.3
880,786 - AO353_04100 0.63 +0.6
880,985 + +0.2
880,996 + +0.1
881,006 - +1.1
881,086 + +1.5
881,162 - -1.4
881,285 - -2.5
881,285 - -1.7
881,285 - -1.4
881,309 + -0.1
881,310 - -2.1
881,310 - -0.9
881,310 - -2.5
881,374 + AO353_04105 0.14 -0.4
881,470 + AO353_04105 0.22 -1.3
881,470 + AO353_04105 0.22 -1.8
881,471 - AO353_04105 0.22 -2.3
881,471 - AO353_04105 0.22 -2.6
881,485 + AO353_04105 0.23 -1.1
881,485 + AO353_04105 0.23 -2.6
881,485 + AO353_04105 0.23 -1.9
881,485 + AO353_04105 0.23 -1.6
881,486 - AO353_04105 0.24 -0.9
881,486 - AO353_04105 0.24 -0.7
881,486 - AO353_04105 0.24 -1.3
881,486 - AO353_04105 0.24 -0.2
881,486 - AO353_04105 0.24 -1.9
881,486 - AO353_04105 0.24 -2.7
881,486 - AO353_04105 0.24 -0.8
881,489 + AO353_04105 0.24 -2.1
881,489 + AO353_04105 0.24 -1.4
881,489 + AO353_04105 0.24 -1.4
881,489 + AO353_04105 0.24 -2.3
881,489 + AO353_04105 0.24 -1.4
881,490 - AO353_04105 0.24 -1.2
881,490 - AO353_04105 0.24 -2.0
881,490 - +0.3
881,590 + AO353_04105 0.32 -1.4
881,617 + AO353_04105 0.34 -1.4
881,740 + AO353_04105 0.44 -1.3
881,740 + AO353_04105 0.44 -3.1
881,756 - AO353_04105 0.46 -1.7
881,756 - AO353_04105 0.46 -3.6
881,804 + AO353_04105 0.50 -1.4
881,804 + AO353_04105 0.50 -1.6
881,804 + AO353_04105 0.50 +0.5
881,804 + AO353_04105 0.50 -1.6
881,804 + AO353_04105 0.50 -2.2
881,804 + AO353_04105 0.50 -1.7
881,804 + AO353_04105 0.50 -1.6
881,804 + AO353_04105 0.50 -2.4
881,805 - AO353_04105 0.50 -1.8
881,805 - AO353_04105 0.50 -3.0
881,805 - AO353_04105 0.50 -3.0
881,805 - AO353_04105 0.50 -1.7
881,805 - AO353_04105 0.50 -2.1
881,805 - AO353_04105 0.50 +1.2
881,805 - AO353_04105 0.50 -2.3
881,828 + AO353_04105 0.52 -2.4
881,828 + AO353_04105 0.52 -0.9
881,829 - AO353_04105 0.52 -2.0
881,852 - AO353_04105 0.54 -1.6
881,938 + AO353_04105 0.61 -3.5
881,938 + AO353_04105 0.61 -2.8
882,017 - AO353_04105 0.67 -1.8
882,017 - AO353_04105 0.67 -3.4

Or see this region's nucleotide sequence