Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03980

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03975 and AO353_03980 are separated by 241 nucleotidesAO353_03980 and AO353_03985 are separated by 42 nucleotides AO353_03975: AO353_03975 - peptidase, at 852,875 to 854,218 _03975 AO353_03980: AO353_03980 - thiol oxidoreductase, at 854,460 to 855,887 _03980 AO353_03985: AO353_03985 - imelysin, at 855,930 to 856,994 _03985 Position (kb) 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 853.478 kb on + strand, within AO353_03975at 853.560 kb on - strand, within AO353_03975at 853.610 kb on + strand, within AO353_03975at 853.610 kb on + strand, within AO353_03975at 853.691 kb on + strand, within AO353_03975at 853.692 kb on - strand, within AO353_03975at 853.692 kb on - strand, within AO353_03975at 853.868 kb on + strand, within AO353_03975at 853.868 kb on + strand, within AO353_03975at 853.868 kb on + strand, within AO353_03975at 853.869 kb on - strand, within AO353_03975at 853.869 kb on - strand, within AO353_03975at 853.869 kb on - strand, within AO353_03975at 853.888 kb on + strand, within AO353_03975at 853.888 kb on + strand, within AO353_03975at 853.889 kb on - strand, within AO353_03975at 853.895 kb on + strand, within AO353_03975at 853.907 kb on + strand, within AO353_03975at 853.907 kb on + strand, within AO353_03975at 853.907 kb on + strand, within AO353_03975at 853.907 kb on + strand, within AO353_03975at 853.907 kb on + strand, within AO353_03975at 853.907 kb on + strand, within AO353_03975at 853.908 kb on - strand, within AO353_03975at 853.908 kb on - strand, within AO353_03975at 853.908 kb on - strand, within AO353_03975at 853.908 kb on - strand, within AO353_03975at 854.063 kb on + strand, within AO353_03975at 854.064 kb on - strand, within AO353_03975at 854.089 kb on + strandat 854.089 kb on + strandat 854.237 kb on + strandat 854.263 kb on + strandat 854.263 kb on + strandat 854.263 kb on + strandat 854.265 kb on + strandat 854.265 kb on + strandat 854.283 kb on + strandat 854.284 kb on - strandat 854.284 kb on - strandat 854.284 kb on - strandat 854.367 kb on + strandat 854.367 kb on + strandat 854.368 kb on - strandat 854.418 kb on + strandat 854.419 kb on - strandat 854.419 kb on - strandat 854.537 kb on + strandat 854.538 kb on - strandat 854.538 kb on - strandat 854.538 kb on - strandat 854.765 kb on + strand, within AO353_03980at 854.856 kb on + strand, within AO353_03980at 854.857 kb on - strand, within AO353_03980at 854.857 kb on - strand, within AO353_03980at 854.902 kb on - strand, within AO353_03980at 854.967 kb on + strand, within AO353_03980at 854.967 kb on + strand, within AO353_03980at 854.967 kb on + strand, within AO353_03980at 854.968 kb on - strand, within AO353_03980at 854.968 kb on - strand, within AO353_03980at 854.991 kb on - strand, within AO353_03980at 855.017 kb on + strand, within AO353_03980at 855.018 kb on - strand, within AO353_03980at 855.018 kb on - strand, within AO353_03980at 855.314 kb on + strand, within AO353_03980at 855.315 kb on - strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.441 kb on + strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.442 kb on - strand, within AO353_03980at 855.443 kb on + strand, within AO353_03980at 855.450 kb on - strand, within AO353_03980at 855.516 kb on + strand, within AO353_03980at 855.516 kb on + strand, within AO353_03980at 855.517 kb on - strand, within AO353_03980at 855.517 kb on - strand, within AO353_03980at 855.517 kb on - strand, within AO353_03980at 855.609 kb on + strand, within AO353_03980at 855.610 kb on - strand, within AO353_03980at 855.832 kb on + strandat 856.050 kb on + strand, within AO353_03985at 856.050 kb on + strand, within AO353_03985at 856.050 kb on + strand, within AO353_03985at 856.051 kb on - strand, within AO353_03985at 856.051 kb on - strand, within AO353_03985at 856.101 kb on + strand, within AO353_03985at 856.351 kb on - strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.356 kb on + strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.357 kb on - strand, within AO353_03985at 856.807 kb on - strand, within AO353_03985

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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853,478 + AO353_03975 0.45 -0.6
853,560 - AO353_03975 0.51 -0.4
853,610 + AO353_03975 0.55 +0.4
853,610 + AO353_03975 0.55 -2.6
853,691 + AO353_03975 0.61 -1.4
853,692 - AO353_03975 0.61 -2.4
853,692 - AO353_03975 0.61 -1.3
853,868 + AO353_03975 0.74 -0.7
853,868 + AO353_03975 0.74 -0.3
853,868 + AO353_03975 0.74 -1.3
853,869 - AO353_03975 0.74 -0.5
853,869 - AO353_03975 0.74 +1.0
853,869 - AO353_03975 0.74 -0.7
853,888 + AO353_03975 0.75 -1.5
853,888 + AO353_03975 0.75 +0.2
853,889 - AO353_03975 0.75 +0.6
853,895 + AO353_03975 0.76 -0.6
853,907 + AO353_03975 0.77 -1.9
853,907 + AO353_03975 0.77 +0.4
853,907 + AO353_03975 0.77 -0.7
853,907 + AO353_03975 0.77 -0.7
853,907 + AO353_03975 0.77 -1.6
853,907 + AO353_03975 0.77 +0.6
853,908 - AO353_03975 0.77 -0.1
853,908 - AO353_03975 0.77 -0.2
853,908 - AO353_03975 0.77 +0.5
853,908 - AO353_03975 0.77 -1.9
854,063 + AO353_03975 0.88 -0.9
854,064 - AO353_03975 0.88 -1.8
854,089 + -0.2
854,089 + -1.8
854,237 + +0.1
854,263 + -0.7
854,263 + +0.7
854,263 + +0.2
854,265 + +0.2
854,265 + +0.3
854,283 + +0.2
854,284 - +0.2
854,284 - +3.5
854,284 - +0.3
854,367 + +0.2
854,367 + -1.1
854,368 - +1.6
854,418 + +0.2
854,419 - +0.1
854,419 - -0.6
854,537 + -1.7
854,538 - -0.2
854,538 - -0.9
854,538 - -0.8
854,765 + AO353_03980 0.21 -1.2
854,856 + AO353_03980 0.28 -0.9
854,857 - AO353_03980 0.28 -3.4
854,857 - AO353_03980 0.28 -0.7
854,902 - AO353_03980 0.31 -0.5
854,967 + AO353_03980 0.36 -2.3
854,967 + AO353_03980 0.36 -0.7
854,967 + AO353_03980 0.36 +1.5
854,968 - AO353_03980 0.36 -1.9
854,968 - AO353_03980 0.36 -0.9
854,991 - AO353_03980 0.37 -0.7
855,017 + AO353_03980 0.39 -0.9
855,018 - AO353_03980 0.39 -1.9
855,018 - AO353_03980 0.39 -3.4
855,314 + AO353_03980 0.60 +0.3
855,315 - AO353_03980 0.60 -0.2
855,441 + AO353_03980 0.69 -2.3
855,441 + AO353_03980 0.69 -1.4
855,441 + AO353_03980 0.69 -2.4
855,441 + AO353_03980 0.69 -0.6
855,441 + AO353_03980 0.69 +0.6
855,442 - AO353_03980 0.69 +0.5
855,442 - AO353_03980 0.69 -0.7
855,442 - AO353_03980 0.69 +0.3
855,442 - AO353_03980 0.69 +0.3
855,442 - AO353_03980 0.69 -0.4
855,442 - AO353_03980 0.69 -2.4
855,442 - AO353_03980 0.69 -0.1
855,442 - AO353_03980 0.69 -1.6
855,442 - AO353_03980 0.69 -1.0
855,442 - AO353_03980 0.69 -1.6
855,442 - AO353_03980 0.69 -1.7
855,443 + AO353_03980 0.69 -1.1
855,450 - AO353_03980 0.69 +0.1
855,516 + AO353_03980 0.74 -1.2
855,516 + AO353_03980 0.74 -0.5
855,517 - AO353_03980 0.74 -1.3
855,517 - AO353_03980 0.74 -1.0
855,517 - AO353_03980 0.74 -0.7
855,609 + AO353_03980 0.80 -0.7
855,610 - AO353_03980 0.81 +1.2
855,832 + -1.2
856,050 + AO353_03985 0.11 -0.4
856,050 + AO353_03985 0.11 -1.0
856,050 + AO353_03985 0.11 -1.8
856,051 - AO353_03985 0.11 -1.6
856,051 - AO353_03985 0.11 +0.5
856,101 + AO353_03985 0.16 -2.4
856,351 - AO353_03985 0.40 -0.5
856,356 + AO353_03985 0.40 +0.6
856,356 + AO353_03985 0.40 -0.2
856,356 + AO353_03985 0.40 +0.5
856,356 + AO353_03985 0.40 -1.7
856,356 + AO353_03985 0.40 -1.5
856,356 + AO353_03985 0.40 -0.3
856,356 + AO353_03985 0.40 -1.0
856,356 + AO353_03985 0.40 -1.4
856,357 - AO353_03985 0.40 -0.1
856,357 - AO353_03985 0.40 +0.9
856,357 - AO353_03985 0.40 -0.3
856,357 - AO353_03985 0.40 -0.1
856,357 - AO353_03985 0.40 -1.3
856,357 - AO353_03985 0.40 -0.6
856,807 - AO353_03985 0.82 -1.3

Or see this region's nucleotide sequence