Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03970 and AO353_03975 are separated by 327 nucleotides AO353_03975 and AO353_03980 are separated by 241 nucleotides
AO353_03970: AO353_03970 - diguanylate cyclase, at 850,496 to 852,547
_03970
AO353_03975: AO353_03975 - peptidase, at 852,875 to 854,218
_03975
AO353_03980: AO353_03980 - thiol oxidoreductase, at 854,460 to 855,887
_03980
Position (kb) 852
853
854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 852.107 kb on + strand, within AO353_03970 at 852.107 kb on + strand, within AO353_03970 at 852.107 kb on + strand, within AO353_03970 at 852.107 kb on + strand, within AO353_03970 at 852.107 kb on + strand, within AO353_03970 at 852.107 kb on + strand, within AO353_03970 at 852.108 kb on - strand, within AO353_03970 at 852.245 kb on + strand, within AO353_03970 at 852.260 kb on + strand, within AO353_03970 at 852.261 kb on - strand, within AO353_03970 at 852.343 kb on + strand at 852.344 kb on - strand at 852.344 kb on - strand at 852.344 kb on - strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.428 kb on + strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.429 kb on - strand at 852.464 kb on + strand at 852.464 kb on + strand at 852.465 kb on - strand at 852.471 kb on - strand at 852.471 kb on - strand at 852.471 kb on - strand at 852.471 kb on - strand at 852.506 kb on + strand at 852.506 kb on + strand at 852.507 kb on - strand at 852.529 kb on + strand at 852.529 kb on + strand at 852.529 kb on + strand at 852.529 kb on + strand at 852.530 kb on - strand at 852.530 kb on - strand at 852.530 kb on - strand at 852.706 kb on + strand at 852.769 kb on + strand at 852.769 kb on + strand at 852.769 kb on + strand at 852.769 kb on + strand at 852.769 kb on + strand at 852.769 kb on + strand at 852.769 kb on + strand at 852.769 kb on + strand at 852.769 kb on + strand at 852.769 kb on + strand at 852.770 kb on - strand at 852.770 kb on - strand at 852.770 kb on - strand at 852.770 kb on - strand at 852.790 kb on - strand at 852.814 kb on + strand at 852.850 kb on + strand at 852.851 kb on - strand at 852.851 kb on - strand at 852.851 kb on - strand at 852.851 kb on - strand at 852.851 kb on - strand at 852.851 kb on - strand at 852.854 kb on + strand at 852.855 kb on - strand at 852.883 kb on + strand at 852.883 kb on + strand at 852.883 kb on + strand at 852.883 kb on + strand at 852.884 kb on - strand at 852.884 kb on - strand at 852.920 kb on - strand at 852.920 kb on - strand at 852.946 kb on + strand at 852.946 kb on + strand at 852.946 kb on + strand at 852.946 kb on + strand at 852.947 kb on - strand at 852.947 kb on - strand at 852.947 kb on - strand at 852.947 kb on - strand at 853.208 kb on + strand, within AO353_03975 at 853.209 kb on - strand, within AO353_03975 at 853.209 kb on - strand, within AO353_03975 at 853.209 kb on - strand, within AO353_03975 at 853.224 kb on + strand, within AO353_03975 at 853.225 kb on - strand, within AO353_03975 at 853.304 kb on + strand, within AO353_03975 at 853.305 kb on - strand, within AO353_03975 at 853.319 kb on + strand, within AO353_03975 at 853.319 kb on + strand, within AO353_03975 at 853.319 kb on + strand, within AO353_03975 at 853.319 kb on + strand, within AO353_03975 at 853.319 kb on + strand, within AO353_03975 at 853.320 kb on - strand, within AO353_03975 at 853.320 kb on - strand, within AO353_03975 at 853.320 kb on - strand, within AO353_03975 at 853.320 kb on - strand, within AO353_03975 at 853.478 kb on + strand, within AO353_03975 at 853.560 kb on - strand, within AO353_03975 at 853.610 kb on + strand, within AO353_03975 at 853.610 kb on + strand, within AO353_03975 at 853.691 kb on + strand, within AO353_03975 at 853.692 kb on - strand, within AO353_03975 at 853.692 kb on - strand, within AO353_03975 at 853.868 kb on + strand, within AO353_03975 at 853.868 kb on + strand, within AO353_03975 at 853.868 kb on + strand, within AO353_03975 at 853.869 kb on - strand, within AO353_03975 at 853.869 kb on - strand, within AO353_03975 at 853.869 kb on - strand, within AO353_03975 at 853.888 kb on + strand, within AO353_03975 at 853.888 kb on + strand, within AO353_03975 at 853.889 kb on - strand, within AO353_03975 at 853.895 kb on + strand, within AO353_03975 at 853.907 kb on + strand, within AO353_03975 at 853.907 kb on + strand, within AO353_03975 at 853.907 kb on + strand, within AO353_03975 at 853.907 kb on + strand, within AO353_03975 at 853.907 kb on + strand, within AO353_03975 at 853.907 kb on + strand, within AO353_03975 at 853.908 kb on - strand, within AO353_03975 at 853.908 kb on - strand, within AO353_03975 at 853.908 kb on - strand, within AO353_03975 at 853.908 kb on - strand, within AO353_03975 at 854.063 kb on + strand, within AO353_03975 at 854.064 kb on - strand, within AO353_03975 at 854.089 kb on + strand at 854.089 kb on + strand at 854.237 kb on + strand at 854.263 kb on + strand at 854.263 kb on + strand at 854.263 kb on + strand at 854.265 kb on + strand at 854.265 kb on + strand at 854.283 kb on + strand at 854.284 kb on - strand at 854.284 kb on - strand at 854.284 kb on - strand at 854.367 kb on + strand at 854.367 kb on + strand at 854.368 kb on - strand at 854.418 kb on + strand at 854.419 kb on - strand at 854.419 kb on - strand at 854.537 kb on + strand at 854.538 kb on - strand at 854.538 kb on - strand at 854.538 kb on - strand at 854.765 kb on + strand, within AO353_03980 at 854.856 kb on + strand, within AO353_03980 at 854.857 kb on - strand, within AO353_03980 at 854.857 kb on - strand, within AO353_03980 at 854.902 kb on - strand, within AO353_03980 at 854.967 kb on + strand, within AO353_03980 at 854.967 kb on + strand, within AO353_03980 at 854.967 kb on + strand, within AO353_03980 at 854.968 kb on - strand, within AO353_03980 at 854.968 kb on - strand, within AO353_03980 at 854.991 kb on - strand, within AO353_03980 at 855.017 kb on + strand, within AO353_03980 at 855.018 kb on - strand, within AO353_03980 at 855.018 kb on - strand, within AO353_03980
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 852,107 + AO353_03970 0.79 +1.0 852,107 + AO353_03970 0.79 +0.6 852,107 + AO353_03970 0.79 +1.1 852,107 + AO353_03970 0.79 +0.7 852,107 + AO353_03970 0.79 -1.3 852,107 + AO353_03970 0.79 -0.1 852,108 - AO353_03970 0.79 -0.5 852,245 + AO353_03970 0.85 +0.6 852,260 + AO353_03970 0.86 +0.9 852,261 - AO353_03970 0.86 +1.2 852,343 + +1.9 852,344 - +0.3 852,344 - +0.4 852,344 - +1.0 852,428 + +0.3 852,428 + -1.8 852,428 + -0.6 852,428 + -0.8 852,428 + +0.7 852,428 + -0.1 852,428 + +0.1 852,428 + +0.1 852,428 + -1.7 852,428 + -0.8 852,428 + +1.4 852,428 + -0.1 852,428 + +0.7 852,428 + -0.3 852,428 + +0.3 852,428 + -0.4 852,428 + -0.5 852,428 + +0.1 852,428 + -1.1 852,428 + -0.2 852,428 + +0.9 852,428 + -0.6 852,428 + -0.1 852,428 + -0.7 852,429 - -0.1 852,429 - +0.1 852,429 - +0.6 852,429 - +0.3 852,429 - -2.0 852,429 - -0.8 852,429 - +1.2 852,429 - -0.2 852,429 - -0.2 852,429 - +0.8 852,429 - +0.6 852,429 - +0.2 852,429 - -1.3 852,429 - -0.6 852,429 - -0.8 852,429 - -0.6 852,429 - +0.6 852,429 - -0.6 852,429 - +0.4 852,429 - +1.9 852,464 + +1.2 852,464 + +0.5 852,465 - +0.3 852,471 - +0.0 852,471 - -0.3 852,471 - +0.4 852,471 - -0.4 852,506 + -0.0 852,506 + +1.0 852,507 - +0.6 852,529 + +0.7 852,529 + +0.2 852,529 + -1.2 852,529 + -0.3 852,530 - +0.2 852,530 - +0.7 852,530 - +1.1 852,706 + +0.8 852,769 + +0.5 852,769 + -0.4 852,769 + +1.9 852,769 + -0.4 852,769 + +0.1 852,769 + +1.6 852,769 + +0.1 852,769 + +0.9 852,769 + +0.8 852,769 + -0.1 852,770 - -1.4 852,770 - -0.4 852,770 - -1.4 852,770 - +0.3 852,790 - -0.7 852,814 + -0.3 852,850 + -0.9 852,851 - -1.2 852,851 - +0.5 852,851 - -2.1 852,851 - -0.1 852,851 - -0.3 852,851 - -0.3 852,854 + +0.4 852,855 - +0.6 852,883 + -0.1 852,883 + -1.4 852,883 + -0.9 852,883 + -3.0 852,884 - -2.3 852,884 - -0.4 852,920 - -1.1 852,920 - -0.9 852,946 + -1.6 852,946 + -1.0 852,946 + -1.3 852,946 + -0.8 852,947 - -1.4 852,947 - -0.6 852,947 - -0.1 852,947 - -0.6 853,208 + AO353_03975 0.25 +0.6 853,209 - AO353_03975 0.25 -1.7 853,209 - AO353_03975 0.25 -1.4 853,209 - AO353_03975 0.25 +0.3 853,224 + AO353_03975 0.26 +0.1 853,225 - AO353_03975 0.26 -0.5 853,304 + AO353_03975 0.32 -0.2 853,305 - AO353_03975 0.32 -1.4 853,319 + AO353_03975 0.33 -0.5 853,319 + AO353_03975 0.33 -0.5 853,319 + AO353_03975 0.33 +0.9 853,319 + AO353_03975 0.33 -1.8 853,319 + AO353_03975 0.33 -0.8 853,320 - AO353_03975 0.33 -3.1 853,320 - AO353_03975 0.33 -2.6 853,320 - AO353_03975 0.33 -0.4 853,320 - AO353_03975 0.33 -0.8 853,478 + AO353_03975 0.45 -0.6 853,560 - AO353_03975 0.51 -0.4 853,610 + AO353_03975 0.55 +0.4 853,610 + AO353_03975 0.55 -2.6 853,691 + AO353_03975 0.61 -1.4 853,692 - AO353_03975 0.61 -2.4 853,692 - AO353_03975 0.61 -1.3 853,868 + AO353_03975 0.74 -0.7 853,868 + AO353_03975 0.74 -0.3 853,868 + AO353_03975 0.74 -1.3 853,869 - AO353_03975 0.74 -0.5 853,869 - AO353_03975 0.74 +1.0 853,869 - AO353_03975 0.74 -0.7 853,888 + AO353_03975 0.75 -1.5 853,888 + AO353_03975 0.75 +0.2 853,889 - AO353_03975 0.75 +0.6 853,895 + AO353_03975 0.76 -0.6 853,907 + AO353_03975 0.77 -1.9 853,907 + AO353_03975 0.77 +0.4 853,907 + AO353_03975 0.77 -0.7 853,907 + AO353_03975 0.77 -0.7 853,907 + AO353_03975 0.77 -1.6 853,907 + AO353_03975 0.77 +0.6 853,908 - AO353_03975 0.77 -0.1 853,908 - AO353_03975 0.77 -0.2 853,908 - AO353_03975 0.77 +0.5 853,908 - AO353_03975 0.77 -1.9 854,063 + AO353_03975 0.88 -0.9 854,064 - AO353_03975 0.88 -1.8 854,089 + -0.2 854,089 + -1.8 854,237 + +0.1 854,263 + -0.7 854,263 + +0.7 854,263 + +0.2 854,265 + +0.2 854,265 + +0.3 854,283 + +0.2 854,284 - +0.2 854,284 - +3.5 854,284 - +0.3 854,367 + +0.2 854,367 + -1.1 854,368 - +1.6 854,418 + +0.2 854,419 - +0.1 854,419 - -0.6 854,537 + -1.7 854,538 - -0.2 854,538 - -0.9 854,538 - -0.8 854,765 + AO353_03980 0.21 -1.2 854,856 + AO353_03980 0.28 -0.9 854,857 - AO353_03980 0.28 -3.4 854,857 - AO353_03980 0.28 -0.7 854,902 - AO353_03980 0.31 -0.5 854,967 + AO353_03980 0.36 -2.3 854,967 + AO353_03980 0.36 -0.7 854,967 + AO353_03980 0.36 +1.5 854,968 - AO353_03980 0.36 -1.9 854,968 - AO353_03980 0.36 -0.9 854,991 - AO353_03980 0.37 -0.7 855,017 + AO353_03980 0.39 -0.9 855,018 - AO353_03980 0.39 -1.9 855,018 - AO353_03980 0.39 -3.4
Or see this region's nucleotide sequence