Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03020 and AO353_03025 are separated by 136 nucleotides AO353_03025 and AO353_03030 are separated by 287 nucleotides
AO353_03020: AO353_03020 - arginine N-succinyltransferase, at 640,615 to 641,634
_03020
AO353_03025: AO353_03025 - acetylornithine aminotransferase, at 641,771 to 642,991
_03025
AO353_03030: AO353_03030 - hypothetical protein, at 643,279 to 647,994
_03030
Position (kb) 641
642
643 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 640.886 kb on + strand, within AO353_03020 at 640.886 kb on + strand, within AO353_03020 at 640.886 kb on + strand, within AO353_03020 at 640.887 kb on - strand, within AO353_03020 at 640.887 kb on - strand, within AO353_03020 at 640.887 kb on - strand, within AO353_03020 at 640.994 kb on + strand, within AO353_03020 at 640.995 kb on - strand, within AO353_03020 at 640.995 kb on - strand, within AO353_03020 at 640.995 kb on - strand, within AO353_03020 at 640.995 kb on - strand, within AO353_03020 at 641.069 kb on + strand, within AO353_03020 at 641.069 kb on + strand, within AO353_03020 at 641.069 kb on + strand, within AO353_03020 at 641.069 kb on + strand, within AO353_03020 at 641.070 kb on - strand, within AO353_03020 at 641.070 kb on - strand, within AO353_03020 at 641.070 kb on - strand, within AO353_03020 at 641.070 kb on - strand, within AO353_03020 at 641.070 kb on - strand, within AO353_03020 at 641.255 kb on + strand, within AO353_03020 at 641.255 kb on + strand, within AO353_03020 at 641.255 kb on + strand, within AO353_03020 at 641.255 kb on + strand, within AO353_03020 at 641.256 kb on - strand, within AO353_03020 at 641.256 kb on - strand, within AO353_03020 at 641.256 kb on - strand, within AO353_03020 at 641.256 kb on - strand, within AO353_03020 at 641.269 kb on + strand, within AO353_03020 at 641.269 kb on + strand, within AO353_03020 at 641.269 kb on + strand, within AO353_03020 at 641.270 kb on - strand, within AO353_03020 at 641.319 kb on + strand, within AO353_03020 at 641.319 kb on + strand, within AO353_03020 at 641.319 kb on + strand, within AO353_03020 at 641.319 kb on + strand, within AO353_03020 at 641.373 kb on - strand, within AO353_03020 at 641.373 kb on - strand, within AO353_03020 at 641.373 kb on - strand, within AO353_03020 at 641.373 kb on - strand, within AO353_03020 at 641.459 kb on + strand, within AO353_03020 at 641.460 kb on - strand, within AO353_03020 at 641.460 kb on - strand, within AO353_03020 at 641.591 kb on - strand at 641.591 kb on - strand at 641.591 kb on - strand at 641.591 kb on - strand at 641.591 kb on - strand at 641.647 kb on + strand at 641.647 kb on + strand at 641.647 kb on + strand at 641.648 kb on - strand at 641.648 kb on - strand at 641.648 kb on - strand at 641.651 kb on + strand at 641.651 kb on + strand at 641.651 kb on + strand at 641.652 kb on - strand at 641.652 kb on - strand at 641.652 kb on - strand at 641.718 kb on + strand at 641.719 kb on - strand at 641.738 kb on - strand at 641.743 kb on + strand at 642.006 kb on + strand, within AO353_03025 at 642.006 kb on + strand, within AO353_03025 at 642.138 kb on + strand, within AO353_03025 at 642.138 kb on + strand, within AO353_03025 at 642.138 kb on + strand, within AO353_03025 at 642.139 kb on - strand, within AO353_03025 at 642.308 kb on + strand, within AO353_03025 at 642.309 kb on - strand, within AO353_03025 at 642.309 kb on - strand, within AO353_03025 at 642.309 kb on - strand, within AO353_03025 at 642.309 kb on - strand, within AO353_03025 at 642.369 kb on + strand, within AO353_03025 at 642.370 kb on - strand, within AO353_03025 at 642.422 kb on + strand, within AO353_03025 at 642.523 kb on - strand, within AO353_03025 at 642.523 kb on - strand, within AO353_03025 at 642.597 kb on + strand, within AO353_03025 at 642.598 kb on - strand, within AO353_03025 at 642.598 kb on - strand, within AO353_03025 at 642.598 kb on - strand, within AO353_03025 at 642.718 kb on + strand, within AO353_03025 at 642.719 kb on - strand, within AO353_03025 at 642.827 kb on + strand, within AO353_03025 at 642.827 kb on + strand, within AO353_03025 at 642.828 kb on - strand, within AO353_03025 at 642.828 kb on - strand, within AO353_03025 at 642.944 kb on + strand at 642.945 kb on - strand at 643.048 kb on + strand at 643.048 kb on + strand at 643.048 kb on + strand at 643.048 kb on + strand at 643.049 kb on - strand at 643.049 kb on - strand at 643.093 kb on + strand at 643.093 kb on + strand at 643.093 kb on + strand at 643.093 kb on + strand at 643.094 kb on - strand at 643.095 kb on + strand at 643.096 kb on - strand at 643.096 kb on - strand at 643.140 kb on + strand at 643.141 kb on - strand at 643.174 kb on + strand at 643.180 kb on - strand at 643.180 kb on - strand at 643.181 kb on + strand at 643.181 kb on + strand at 643.181 kb on + strand at 643.181 kb on + strand at 643.181 kb on + strand at 643.181 kb on + strand at 643.181 kb on + strand at 643.181 kb on + strand at 643.181 kb on + strand at 643.181 kb on + strand at 643.182 kb on - strand at 643.182 kb on - strand at 643.182 kb on - strand at 643.182 kb on - strand at 643.207 kb on - strand at 643.207 kb on - strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.210 kb on + strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.211 kb on - strand at 643.214 kb on + strand at 643.214 kb on + strand at 643.214 kb on + strand at 643.214 kb on + strand at 643.214 kb on + strand at 643.215 kb on - strand at 643.215 kb on - strand at 643.215 kb on - strand at 643.215 kb on - strand at 643.215 kb on - strand at 643.215 kb on - strand at 643.215 kb on - strand at 643.253 kb on + strand at 643.254 kb on - strand at 643.254 kb on - strand at 643.254 kb on - strand at 643.254 kb on - strand at 643.361 kb on + strand at 643.361 kb on + strand at 643.361 kb on + strand at 643.361 kb on + strand at 643.361 kb on + strand at 643.361 kb on + strand at 643.361 kb on + strand at 643.361 kb on + strand at 643.362 kb on - strand at 643.362 kb on - strand at 643.362 kb on - strand at 643.618 kb on + strand at 643.618 kb on + strand at 643.618 kb on + strand at 643.618 kb on + strand at 643.618 kb on + strand at 643.618 kb on + strand at 643.618 kb on + strand at 643.618 kb on + strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.619 kb on - strand at 643.738 kb on + strand at 643.739 kb on - strand at 643.870 kb on + strand, within AO353_03030 at 643.870 kb on + strand, within AO353_03030 at 643.870 kb on + strand, within AO353_03030 at 643.870 kb on + strand, within AO353_03030 at 643.871 kb on - strand, within AO353_03030 at 643.883 kb on + strand, within AO353_03030 at 643.883 kb on + strand, within AO353_03030 at 643.883 kb on + strand, within AO353_03030 at 643.884 kb on - strand, within AO353_03030 at 643.884 kb on - strand, within AO353_03030 at 643.928 kb on + strand, within AO353_03030 at 643.929 kb on - strand, within AO353_03030
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 640,886 + AO353_03020 0.27 +1.3 640,886 + AO353_03020 0.27 -3.6 640,886 + AO353_03020 0.27 -2.0 640,887 - AO353_03020 0.27 -1.2 640,887 - AO353_03020 0.27 -0.6 640,887 - AO353_03020 0.27 -0.5 640,994 + AO353_03020 0.37 -1.2 640,995 - AO353_03020 0.37 -0.9 640,995 - AO353_03020 0.37 -1.8 640,995 - AO353_03020 0.37 -0.9 640,995 - AO353_03020 0.37 -0.8 641,069 + AO353_03020 0.45 -1.3 641,069 + AO353_03020 0.45 -1.8 641,069 + AO353_03020 0.45 -1.8 641,069 + AO353_03020 0.45 -2.4 641,070 - AO353_03020 0.45 -1.9 641,070 - AO353_03020 0.45 -2.1 641,070 - AO353_03020 0.45 -1.4 641,070 - AO353_03020 0.45 -1.5 641,070 - AO353_03020 0.45 -2.0 641,255 + AO353_03020 0.63 -3.0 641,255 + AO353_03020 0.63 -0.1 641,255 + AO353_03020 0.63 -2.0 641,255 + AO353_03020 0.63 -1.5 641,256 - AO353_03020 0.63 -2.5 641,256 - AO353_03020 0.63 -3.1 641,256 - AO353_03020 0.63 -1.4 641,256 - AO353_03020 0.63 -2.4 641,269 + AO353_03020 0.64 -1.5 641,269 + AO353_03020 0.64 +1.0 641,269 + AO353_03020 0.64 -1.9 641,270 - AO353_03020 0.64 -1.4 641,319 + AO353_03020 0.69 -1.7 641,319 + AO353_03020 0.69 -0.2 641,319 + AO353_03020 0.69 -0.9 641,319 + AO353_03020 0.69 -1.2 641,373 - AO353_03020 0.74 -2.1 641,373 - AO353_03020 0.74 -3.6 641,373 - AO353_03020 0.74 -3.6 641,373 - AO353_03020 0.74 -2.6 641,459 + AO353_03020 0.83 -1.5 641,460 - AO353_03020 0.83 -1.4 641,460 - AO353_03020 0.83 -1.8 641,591 - -1.9 641,591 - -2.6 641,591 - -1.8 641,591 - -1.9 641,591 - -3.4 641,647 + -0.9 641,647 + -1.4 641,647 + -1.5 641,648 - +1.1 641,648 - -1.3 641,648 - +1.5 641,651 + -2.7 641,651 + -1.2 641,651 + -0.8 641,652 - -0.3 641,652 - -0.5 641,652 - -0.4 641,718 + -3.0 641,719 - -1.5 641,738 - -0.4 641,743 + -1.7 642,006 + AO353_03025 0.19 -2.1 642,006 + AO353_03025 0.19 -2.6 642,138 + AO353_03025 0.30 -0.3 642,138 + AO353_03025 0.30 -2.1 642,138 + AO353_03025 0.30 -2.6 642,139 - AO353_03025 0.30 +0.1 642,308 + AO353_03025 0.44 -2.3 642,309 - AO353_03025 0.44 -0.2 642,309 - AO353_03025 0.44 -0.5 642,309 - AO353_03025 0.44 -2.9 642,309 - AO353_03025 0.44 -0.2 642,369 + AO353_03025 0.49 -1.2 642,370 - AO353_03025 0.49 -1.2 642,422 + AO353_03025 0.53 -1.9 642,523 - AO353_03025 0.62 +0.3 642,523 - AO353_03025 0.62 -1.2 642,597 + AO353_03025 0.68 -2.5 642,598 - AO353_03025 0.68 +0.1 642,598 - AO353_03025 0.68 +0.8 642,598 - AO353_03025 0.68 +0.1 642,718 + AO353_03025 0.78 -1.0 642,719 - AO353_03025 0.78 -1.1 642,827 + AO353_03025 0.86 -1.2 642,827 + AO353_03025 0.86 -1.5 642,828 - AO353_03025 0.87 +0.6 642,828 - AO353_03025 0.87 -0.5 642,944 + -1.9 642,945 - +0.1 643,048 + -0.9 643,048 + -1.4 643,048 + +0.3 643,048 + -2.3 643,049 - +0.8 643,049 - +0.0 643,093 + -1.5 643,093 + -0.3 643,093 + +0.9 643,093 + -0.2 643,094 - -0.1 643,095 + -2.3 643,096 - -0.5 643,096 - -0.1 643,140 + +1.4 643,141 - -0.6 643,174 + +0.3 643,180 - +0.8 643,180 - -1.2 643,181 + -0.0 643,181 + -1.6 643,181 + -0.4 643,181 + -0.7 643,181 + -1.0 643,181 + +1.5 643,181 + +0.4 643,181 + -1.0 643,181 + -0.2 643,181 + +0.8 643,182 - -1.2 643,182 - -0.0 643,182 - +1.0 643,182 - +0.8 643,207 - -0.3 643,207 - +2.1 643,210 + -0.2 643,210 + -1.0 643,210 + -1.1 643,210 + +0.5 643,210 + +0.1 643,210 + -0.4 643,210 + -1.0 643,210 + -0.9 643,210 + +0.8 643,210 + -0.9 643,210 + +0.1 643,211 - +0.4 643,211 - -0.6 643,211 - +0.3 643,211 - +0.5 643,211 - +1.3 643,211 - -0.2 643,211 - +1.7 643,211 - +0.1 643,211 - +1.5 643,211 - +1.2 643,211 - +0.1 643,211 - -0.4 643,211 - +0.6 643,214 + +0.5 643,214 + -1.6 643,214 + -0.0 643,214 + -0.1 643,214 + +0.8 643,215 - +1.0 643,215 - +0.6 643,215 - -0.3 643,215 - -0.4 643,215 - +0.5 643,215 - +1.4 643,215 - -0.8 643,253 + -0.0 643,254 - +0.1 643,254 - +0.3 643,254 - -0.8 643,254 - +0.1 643,361 + +0.5 643,361 + -0.3 643,361 + +0.4 643,361 + +0.7 643,361 + -0.3 643,361 + -0.7 643,361 + -0.4 643,361 + -0.6 643,362 - +0.6 643,362 - -0.5 643,362 - +0.8 643,618 + +0.3 643,618 + +1.2 643,618 + -0.5 643,618 + +0.4 643,618 + +0.9 643,618 + -0.3 643,618 + -0.4 643,618 + -0.8 643,619 - +0.2 643,619 - -0.2 643,619 - +0.4 643,619 - +0.1 643,619 - +0.4 643,619 - -0.5 643,619 - +2.4 643,619 - +0.4 643,619 - -0.3 643,619 - -1.0 643,619 - +0.8 643,619 - -0.8 643,619 - -1.1 643,619 - +0.4 643,619 - -0.7 643,619 - +0.5 643,619 - -1.7 643,619 - -0.2 643,619 - +0.3 643,738 + +0.0 643,739 - +0.8 643,870 + AO353_03030 0.13 +0.3 643,870 + AO353_03030 0.13 +0.9 643,870 + AO353_03030 0.13 -0.1 643,870 + AO353_03030 0.13 +0.1 643,871 - AO353_03030 0.13 +0.2 643,883 + AO353_03030 0.13 +0.4 643,883 + AO353_03030 0.13 +0.1 643,883 + AO353_03030 0.13 +2.0 643,884 - AO353_03030 0.13 +0.1 643,884 - AO353_03030 0.13 +2.5 643,928 + AO353_03030 0.14 +0.8 643,929 - AO353_03030 0.14 -0.2
Or see this region's nucleotide sequence