Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02295 and AO353_02300 are separated by 82 nucleotides AO353_02300 and AO353_02305 are separated by 343 nucleotides
AO353_02295: AO353_02295 - GntR family transcriptional regulator, at 488,362 to 489,528
_02295
AO353_02300: AO353_02300 - MarR family transcriptional regulator, at 489,611 to 490,054
_02300
AO353_02305: AO353_02305 - guanine permease, at 490,398 to 491,747
_02305
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 488.825 kb on + strand, within AO353_02295 at 488.873 kb on + strand, within AO353_02295 at 488.873 kb on + strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 488.874 kb on - strand, within AO353_02295 at 489.021 kb on - strand, within AO353_02295 at 489.021 kb on - strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.059 kb on + strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.060 kb on - strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.185 kb on + strand, within AO353_02295 at 489.186 kb on - strand, within AO353_02295 at 489.186 kb on - strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.227 kb on + strand, within AO353_02295 at 489.228 kb on - strand, within AO353_02295 at 489.228 kb on - strand, within AO353_02295 at 489.366 kb on - strand, within AO353_02295 at 489.499 kb on - strand at 489.499 kb on - strand at 489.560 kb on + strand at 489.571 kb on - strand at 489.585 kb on - strand at 489.602 kb on + strand at 489.603 kb on - strand at 489.622 kb on + strand at 489.889 kb on + strand, within AO353_02300 at 489.889 kb on + strand, within AO353_02300 at 489.889 kb on + strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.011 kb on + strand at 490.118 kb on - strand at 490.118 kb on - strand at 490.141 kb on - strand at 490.141 kb on - strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.263 kb on - strand at 490.274 kb on + strand at 490.274 kb on + strand at 490.323 kb on + strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.374 kb on + strand at 490.374 kb on + strand at 490.375 kb on - strand at 490.375 kb on - strand at 490.375 kb on - strand at 490.390 kb on + strand at 490.390 kb on + strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.475 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.527 kb on - strand at 490.527 kb on - strand at 490.527 kb on - strand at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.659 kb on + strand, within AO353_02305 at 490.660 kb on - strand, within AO353_02305 at 490.660 kb on - strand, within AO353_02305 at 490.660 kb on - strand, within AO353_02305 at 490.712 kb on + strand, within AO353_02305 at 490.712 kb on + strand, within AO353_02305 at 490.713 kb on - strand, within AO353_02305 at 490.716 kb on + strand, within AO353_02305 at 490.716 kb on + strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.017 kb on - strand, within AO353_02305
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 488,825 + AO353_02295 0.40 -0.0 488,873 + AO353_02295 0.44 +0.8 488,873 + AO353_02295 0.44 -0.2 488,874 - AO353_02295 0.44 -0.4 488,874 - AO353_02295 0.44 -0.7 488,874 - AO353_02295 0.44 +1.4 488,874 - AO353_02295 0.44 +0.6 489,021 - AO353_02295 0.56 -1.8 489,021 - AO353_02295 0.56 -1.4 489,059 + AO353_02295 0.60 +0.4 489,059 + AO353_02295 0.60 -0.5 489,059 + AO353_02295 0.60 -0.6 489,059 + AO353_02295 0.60 -0.2 489,060 - AO353_02295 0.60 -0.5 489,060 - AO353_02295 0.60 +1.0 489,060 - AO353_02295 0.60 -0.2 489,060 - AO353_02295 0.60 +0.3 489,185 + AO353_02295 0.71 -0.1 489,185 + AO353_02295 0.71 +0.0 489,185 + AO353_02295 0.71 -0.5 489,185 + AO353_02295 0.71 +0.9 489,186 - AO353_02295 0.71 +0.2 489,186 - AO353_02295 0.71 -0.0 489,227 + AO353_02295 0.74 +0.2 489,227 + AO353_02295 0.74 -0.1 489,227 + AO353_02295 0.74 +1.8 489,227 + AO353_02295 0.74 -0.3 489,227 + AO353_02295 0.74 +0.4 489,228 - AO353_02295 0.74 -0.6 489,228 - AO353_02295 0.74 -0.8 489,366 - AO353_02295 0.86 -1.6 489,499 - +0.2 489,499 - -0.8 489,560 + -0.6 489,571 - +1.1 489,585 - -0.7 489,602 + +0.1 489,603 - +0.3 489,622 + -1.5 489,889 + AO353_02300 0.63 -1.7 489,889 + AO353_02300 0.63 -0.8 489,889 + AO353_02300 0.63 +0.2 490,000 - AO353_02300 0.88 +0.8 490,000 - AO353_02300 0.88 -2.6 490,000 - AO353_02300 0.88 -0.4 490,000 - AO353_02300 0.88 -1.7 490,011 + +0.8 490,118 - -0.5 490,118 - -0.3 490,141 - +0.3 490,141 - +0.7 490,203 + +0.2 490,203 + -0.7 490,203 + -0.8 490,203 + -0.8 490,203 + -1.0 490,204 - +0.9 490,204 - -1.3 490,204 - +0.0 490,204 - +1.5 490,204 - +0.6 490,205 + +0.1 490,205 + -0.2 490,205 + +0.0 490,205 + +0.8 490,205 + +0.8 490,205 + +1.0 490,205 + +0.8 490,205 + -0.6 490,205 + +0.0 490,205 + -0.3 490,205 + +0.3 490,205 + +0.5 490,205 + -1.4 490,206 - +0.2 490,206 - -0.2 490,206 - -0.0 490,206 - -1.6 490,206 - -0.1 490,206 - -1.1 490,206 - +0.3 490,206 - -0.7 490,206 - -0.0 490,206 - -0.5 490,206 - +0.2 490,206 - -0.1 490,206 - +0.6 490,206 - +0.7 490,263 - -0.0 490,274 + -1.4 490,274 + -0.4 490,323 + +0.8 490,324 - -1.9 490,324 - -0.0 490,324 - +0.8 490,324 - +0.6 490,324 - +1.3 490,324 - +0.6 490,368 + +0.0 490,368 + +1.2 490,368 + +0.6 490,368 + +0.8 490,369 - +0.9 490,369 - -0.8 490,369 - -0.7 490,369 - +1.0 490,369 - -0.1 490,374 + -0.1 490,374 + +1.1 490,375 - -0.1 490,375 - +1.2 490,375 - -0.4 490,390 + +0.3 490,390 + -0.6 490,391 - -1.2 490,391 - +0.8 490,391 - +0.2 490,391 - -0.2 490,391 - -0.2 490,391 - -0.2 490,475 + -0.5 490,523 + -0.2 490,523 + +0.9 490,523 + +0.8 490,523 + +0.7 490,524 - +0.5 490,524 - +0.6 490,524 - +0.4 490,524 - -1.9 490,524 - -1.8 490,524 - -0.1 490,526 + -0.8 490,526 + +1.2 490,526 + +0.5 490,526 + -0.5 490,526 + +0.8 490,526 + -0.4 490,527 - +0.1 490,527 - -1.6 490,527 - +0.1 490,548 + AO353_02305 0.11 -0.6 490,548 + +0.4 490,548 + AO353_02305 0.11 +0.3 490,548 + AO353_02305 0.11 +0.2 490,548 + AO353_02305 0.11 -0.4 490,548 + AO353_02305 0.11 -0.0 490,548 + AO353_02305 0.11 +1.3 490,549 - AO353_02305 0.11 -0.2 490,549 - AO353_02305 0.11 +0.6 490,549 - AO353_02305 0.11 -0.2 490,549 - AO353_02305 0.11 -0.2 490,549 - AO353_02305 0.11 -0.2 490,549 - AO353_02305 0.11 -0.9 490,549 - AO353_02305 0.11 +0.2 490,549 - AO353_02305 0.11 +0.9 490,549 - AO353_02305 0.11 +0.1 490,659 + AO353_02305 0.19 +0.3 490,660 - AO353_02305 0.19 -0.7 490,660 - AO353_02305 0.19 -0.3 490,660 - AO353_02305 0.19 -1.7 490,712 + AO353_02305 0.23 -0.1 490,712 + AO353_02305 0.23 -0.3 490,713 - AO353_02305 0.23 -0.4 490,716 + AO353_02305 0.24 +0.8 490,716 + AO353_02305 0.24 +1.1 490,717 - AO353_02305 0.24 +0.8 490,717 - AO353_02305 0.24 -0.4 490,717 - AO353_02305 0.24 -0.2 490,717 - AO353_02305 0.24 +1.4 490,717 - AO353_02305 0.24 -0.2 490,835 + AO353_02305 0.32 -0.7 490,835 + AO353_02305 0.32 +0.5 490,835 + AO353_02305 0.32 +0.0 490,835 + AO353_02305 0.32 -0.6 490,835 + AO353_02305 0.32 -0.2 490,835 + AO353_02305 0.32 +1.2 490,835 + AO353_02305 0.32 +0.1 491,016 + AO353_02305 0.46 -1.0 491,016 + AO353_02305 0.46 -1.0 491,016 + AO353_02305 0.46 +0.7 491,016 + AO353_02305 0.46 -0.7 491,017 - AO353_02305 0.46 +0.9
Or see this region's nucleotide sequence