Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01530 and AO353_01535 overlap by 4 nucleotides AO353_01535 and AO353_01540 are separated by 57 nucleotides AO353_01540 and AO353_01545 are separated by 975 nucleotides
AO353_01530: AO353_01530 - amino acid ABC transporter permease, at 326,943 to 327,653
_01530
AO353_01535: AO353_01535 - amino acid ABC transporter permease, at 327,650 to 328,378
_01535
AO353_01540: AO353_01540 - ABC transporter substrate-binding protein, at 328,436 to 329,215
_01540
AO353_01545: AO353_01545 - secretin, at 330,191 to 331,432
_01545
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.439 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.463 kb on + strand, within AO353_01530 at 327.469 kb on + strand, within AO353_01530 at 327.469 kb on + strand, within AO353_01530 at 327.489 kb on + strand, within AO353_01530 at 327.489 kb on + strand, within AO353_01530 at 327.489 kb on + strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.490 kb on - strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.493 kb on + strand, within AO353_01530 at 327.494 kb on - strand, within AO353_01530 at 327.494 kb on - strand, within AO353_01530 at 327.611 kb on + strand at 327.611 kb on + strand at 327.612 kb on - strand at 327.613 kb on + strand at 327.613 kb on + strand at 327.614 kb on - strand at 327.614 kb on - strand at 327.614 kb on - strand at 327.614 kb on - strand at 327.614 kb on - strand at 327.631 kb on + strand at 327.643 kb on - strand at 327.643 kb on - strand at 327.656 kb on + strand at 327.656 kb on + strand at 327.656 kb on + strand at 327.656 kb on + strand at 327.656 kb on + strand at 327.657 kb on - strand at 327.657 kb on - strand at 327.657 kb on - strand at 327.681 kb on + strand at 327.682 kb on - strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.708 kb on + strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.709 kb on - strand at 327.735 kb on + strand, within AO353_01535 at 327.735 kb on + strand, within AO353_01535 at 327.735 kb on + strand, within AO353_01535 at 327.735 kb on + strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.736 kb on - strand, within AO353_01535 at 327.774 kb on + strand, within AO353_01535 at 327.775 kb on - strand, within AO353_01535 at 327.784 kb on + strand, within AO353_01535 at 327.869 kb on - strand, within AO353_01535 at 327.948 kb on + strand, within AO353_01535 at 328.017 kb on + strand, within AO353_01535 at 328.017 kb on + strand, within AO353_01535 at 328.018 kb on - strand, within AO353_01535 at 328.018 kb on - strand, within AO353_01535 at 328.018 kb on - strand, within AO353_01535 at 328.018 kb on - strand, within AO353_01535 at 328.026 kb on + strand, within AO353_01535 at 328.026 kb on + strand, within AO353_01535 at 328.026 kb on + strand, within AO353_01535 at 328.077 kb on + strand, within AO353_01535 at 328.077 kb on + strand, within AO353_01535 at 328.077 kb on + strand, within AO353_01535 at 328.077 kb on + strand, within AO353_01535 at 328.077 kb on + strand, within AO353_01535 at 328.077 kb on + strand, within AO353_01535 at 328.078 kb on - strand, within AO353_01535 at 328.078 kb on - strand, within AO353_01535 at 328.078 kb on - strand, within AO353_01535 at 328.182 kb on + strand, within AO353_01535 at 328.182 kb on + strand, within AO353_01535 at 328.182 kb on + strand, within AO353_01535 at 328.183 kb on - strand, within AO353_01535 at 328.183 kb on - strand, within AO353_01535 at 328.274 kb on + strand, within AO353_01535 at 328.275 kb on - strand, within AO353_01535 at 328.280 kb on + strand, within AO353_01535 at 328.378 kb on + strand at 328.378 kb on + strand at 328.378 kb on + strand at 328.378 kb on + strand at 328.378 kb on + strand at 328.378 kb on + strand at 328.378 kb on + strand at 328.378 kb on + strand at 328.378 kb on + strand at 328.379 kb on - strand at 328.392 kb on - strand at 328.392 kb on - strand at 328.392 kb on - strand at 328.392 kb on - strand at 328.392 kb on - strand at 328.392 kb on - strand at 328.400 kb on - strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.437 kb on + strand at 328.438 kb on - strand at 328.438 kb on - strand at 328.438 kb on - strand at 328.438 kb on - strand at 328.438 kb on - strand at 328.438 kb on - strand at 328.438 kb on - strand at 328.449 kb on + strand at 328.450 kb on - strand at 328.450 kb on - strand at 328.491 kb on + strand at 328.491 kb on + strand at 328.492 kb on - strand at 328.492 kb on - strand at 328.492 kb on - strand at 328.492 kb on - strand at 328.492 kb on - strand at 328.492 kb on - strand at 328.621 kb on - strand, within AO353_01540 at 328.713 kb on + strand, within AO353_01540 at 328.713 kb on + strand, within AO353_01540 at 328.734 kb on + strand, within AO353_01540 at 328.734 kb on + strand, within AO353_01540 at 328.735 kb on - strand, within AO353_01540 at 328.735 kb on - strand, within AO353_01540 at 328.749 kb on - strand, within AO353_01540 at 328.780 kb on - strand, within AO353_01540 at 328.780 kb on - strand, within AO353_01540 at 328.836 kb on - strand, within AO353_01540 at 328.836 kb on - strand, within AO353_01540 at 328.836 kb on - strand, within AO353_01540 at 328.863 kb on + strand, within AO353_01540 at 328.864 kb on - strand, within AO353_01540 at 328.864 kb on - strand, within AO353_01540 at 328.864 kb on - strand, within AO353_01540 at 328.864 kb on - strand, within AO353_01540 at 328.949 kb on + strand, within AO353_01540 at 328.949 kb on + strand, within AO353_01540 at 328.949 kb on + strand, within AO353_01540 at 328.949 kb on + strand, within AO353_01540 at 328.949 kb on + strand, within AO353_01540 at 328.949 kb on + strand, within AO353_01540 at 328.950 kb on - strand, within AO353_01540 at 328.950 kb on - strand, within AO353_01540 at 328.950 kb on - strand, within AO353_01540 at 328.950 kb on - strand, within AO353_01540 at 329.109 kb on + strand, within AO353_01540 at 329.143 kb on - strand at 329.216 kb on + strand at 329.216 kb on + strand at 329.216 kb on + strand at 329.216 kb on + strand at 329.219 kb on + strand at 329.220 kb on - strand at 329.220 kb on - strand at 329.220 kb on - strand at 329.220 kb on - strand at 329.229 kb on + strand at 329.238 kb on + strand at 329.268 kb on - strand at 329.306 kb on + strand at 329.306 kb on + strand at 329.306 kb on + strand at 329.306 kb on + strand at 329.306 kb on + strand at 329.307 kb on - strand at 329.307 kb on - strand at 329.307 kb on - strand at 329.307 kb on - strand at 329.307 kb on - strand at 329.307 kb on - strand at 329.307 kb on - strand at 329.316 kb on - strand at 329.316 kb on - strand at 329.353 kb on + strand at 329.353 kb on + strand at 329.354 kb on - strand at 329.354 kb on - strand at 329.367 kb on + strand at 329.367 kb on + strand at 329.368 kb on - strand at 329.368 kb on - strand at 329.368 kb on - strand at 329.374 kb on - strand at 329.374 kb on - strand at 329.377 kb on + strand at 329.378 kb on - strand at 329.378 kb on - strand at 329.378 kb on - strand at 329.385 kb on + strand at 329.434 kb on + strand at 329.434 kb on + strand at 329.434 kb on + strand at 329.435 kb on - strand at 329.541 kb on + strand at 329.542 kb on - strand at 329.542 kb on - strand at 329.590 kb on - strand at 329.674 kb on - strand at 329.674 kb on - strand at 329.702 kb on + strand at 329.702 kb on + strand at 329.702 kb on + strand at 329.702 kb on + strand at 329.702 kb on + strand at 329.702 kb on + strand at 329.703 kb on - strand at 329.703 kb on - strand at 329.727 kb on - strand at 329.786 kb on + strand at 329.786 kb on + strand at 329.786 kb on + strand at 329.787 kb on - strand at 329.787 kb on - strand at 329.787 kb on - strand at 329.787 kb on - strand at 329.794 kb on + strand at 329.794 kb on + strand at 329.795 kb on - strand at 329.878 kb on + strand at 329.879 kb on - strand at 329.879 kb on - strand at 329.879 kb on - strand at 329.879 kb on - strand at 329.879 kb on - strand at 329.879 kb on - strand at 329.880 kb on + strand at 329.908 kb on + strand at 329.979 kb on + strand at 330.003 kb on + strand at 330.004 kb on - strand at 330.004 kb on - strand at 330.012 kb on + strand at 330.012 kb on + strand at 330.012 kb on + strand at 330.013 kb on - strand at 330.013 kb on - strand at 330.013 kb on - strand at 330.013 kb on - strand at 330.038 kb on + strand at 330.038 kb on + strand at 330.038 kb on + strand at 330.038 kb on + strand at 330.038 kb on + strand at 330.038 kb on + strand at 330.039 kb on - strand at 330.039 kb on - strand at 330.039 kb on - strand at 330.039 kb on - strand at 330.039 kb on - strand at 330.039 kb on - strand at 330.070 kb on + strand at 330.070 kb on + strand at 330.071 kb on - strand at 330.086 kb on - strand at 330.086 kb on - strand at 330.170 kb on + strand at 330.170 kb on + strand at 330.190 kb on - strand at 330.190 kb on - strand at 330.190 kb on - strand at 330.197 kb on + strand at 330.197 kb on + strand at 330.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 327,439 + AO353_01530 0.70 -0.2 327,439 + AO353_01530 0.70 +1.5 327,439 + AO353_01530 0.70 -0.3 327,439 + AO353_01530 0.70 -0.3 327,439 + AO353_01530 0.70 +0.9 327,439 + AO353_01530 0.70 +0.3 327,439 + AO353_01530 0.70 +0.6 327,439 + AO353_01530 0.70 +0.3 327,463 + AO353_01530 0.73 -0.4 327,463 + AO353_01530 0.73 +0.2 327,463 + AO353_01530 0.73 -0.5 327,463 + AO353_01530 0.73 +1.0 327,463 + AO353_01530 0.73 -1.1 327,463 + AO353_01530 0.73 +0.3 327,469 + AO353_01530 0.74 -0.1 327,469 + AO353_01530 0.74 -0.3 327,489 + AO353_01530 0.77 +0.1 327,489 + AO353_01530 0.77 +0.3 327,489 + AO353_01530 0.77 +0.3 327,490 - AO353_01530 0.77 +0.3 327,490 - AO353_01530 0.77 -0.3 327,490 - AO353_01530 0.77 +0.8 327,490 - AO353_01530 0.77 +0.1 327,490 - AO353_01530 0.77 +0.1 327,490 - AO353_01530 0.77 -0.6 327,493 + AO353_01530 0.77 +0.5 327,493 + AO353_01530 0.77 -0.3 327,493 + AO353_01530 0.77 +0.9 327,493 + AO353_01530 0.77 -0.0 327,493 + AO353_01530 0.77 +0.0 327,494 - AO353_01530 0.77 +0.3 327,494 - AO353_01530 0.77 -0.7 327,611 + -0.6 327,611 + +1.0 327,612 - -0.2 327,613 + +0.4 327,613 + +0.3 327,614 - +1.9 327,614 - +1.7 327,614 - +0.8 327,614 - -1.1 327,614 - -0.7 327,631 + +0.1 327,643 - -0.1 327,643 - -0.3 327,656 + +1.1 327,656 + -0.1 327,656 + +0.0 327,656 + +0.0 327,656 + -0.6 327,657 - +1.1 327,657 - -0.5 327,657 - +0.7 327,681 + +0.5 327,682 - +0.1 327,708 + -0.8 327,708 + +1.0 327,708 + -1.5 327,708 + +0.1 327,708 + -0.4 327,708 + +0.0 327,708 + -0.8 327,708 + +1.3 327,708 + +0.0 327,709 - +0.3 327,709 - -0.5 327,709 - -1.3 327,709 - -1.6 327,709 - +0.1 327,709 - -0.2 327,709 - +0.3 327,735 + AO353_01535 0.12 -0.5 327,735 + AO353_01535 0.12 -0.1 327,735 + AO353_01535 0.12 +1.9 327,735 + AO353_01535 0.12 +0.3 327,736 - AO353_01535 0.12 -0.3 327,736 - AO353_01535 0.12 +0.3 327,736 - AO353_01535 0.12 -0.2 327,736 - AO353_01535 0.12 +0.2 327,736 - AO353_01535 0.12 +1.1 327,736 - AO353_01535 0.12 +0.0 327,774 + AO353_01535 0.17 -1.3 327,775 - AO353_01535 0.17 -0.8 327,784 + AO353_01535 0.18 -0.3 327,869 - AO353_01535 0.30 +0.1 327,948 + AO353_01535 0.41 +0.4 328,017 + AO353_01535 0.50 -0.8 328,017 + AO353_01535 0.50 -0.2 328,018 - AO353_01535 0.50 +0.4 328,018 - AO353_01535 0.50 -0.7 328,018 - AO353_01535 0.50 +0.1 328,018 - AO353_01535 0.50 -0.3 328,026 + AO353_01535 0.52 +0.4 328,026 + AO353_01535 0.52 +0.1 328,026 + AO353_01535 0.52 +0.0 328,077 + AO353_01535 0.59 -0.9 328,077 + AO353_01535 0.59 +1.0 328,077 + AO353_01535 0.59 +0.7 328,077 + AO353_01535 0.59 -0.7 328,077 + AO353_01535 0.59 +0.3 328,077 + AO353_01535 0.59 +0.6 328,078 - AO353_01535 0.59 +1.9 328,078 - AO353_01535 0.59 +1.0 328,078 - AO353_01535 0.59 +0.1 328,182 + AO353_01535 0.73 +0.5 328,182 + AO353_01535 0.73 +0.4 328,182 + AO353_01535 0.73 +0.3 328,183 - AO353_01535 0.73 +1.2 328,183 - AO353_01535 0.73 +0.3 328,274 + AO353_01535 0.86 -0.4 328,275 - AO353_01535 0.86 -0.6 328,280 + AO353_01535 0.86 +1.0 328,378 + +0.6 328,378 + +0.4 328,378 + +0.3 328,378 + -0.1 328,378 + +1.4 328,378 + -0.6 328,378 + -0.9 328,378 + +0.2 328,378 + -1.4 328,379 - +0.2 328,392 - -0.2 328,392 - -0.2 328,392 - +1.5 328,392 - +1.7 328,392 - -1.1 328,392 - +0.9 328,400 - +0.1 328,437 + +1.1 328,437 + +0.6 328,437 + +0.2 328,437 + -0.9 328,437 + +0.5 328,437 + +1.1 328,437 + +0.3 328,437 + -0.7 328,437 + -1.8 328,437 + +0.7 328,437 + -0.2 328,438 - +0.1 328,438 - -0.0 328,438 - -1.2 328,438 - -0.4 328,438 - -1.1 328,438 - +0.1 328,438 - +0.7 328,449 + -1.6 328,450 - +2.1 328,450 - -0.9 328,491 + -0.7 328,491 + +1.3 328,492 - +0.2 328,492 - +0.5 328,492 - +0.7 328,492 - +0.5 328,492 - -0.4 328,492 - -1.3 328,621 - AO353_01540 0.24 +0.6 328,713 + AO353_01540 0.36 +1.0 328,713 + AO353_01540 0.36 +0.1 328,734 + AO353_01540 0.38 +0.7 328,734 + AO353_01540 0.38 +0.9 328,735 - AO353_01540 0.38 +0.2 328,735 - AO353_01540 0.38 -0.0 328,749 - AO353_01540 0.40 -1.9 328,780 - AO353_01540 0.44 +0.6 328,780 - AO353_01540 0.44 -0.0 328,836 - AO353_01540 0.51 +4.3 328,836 - AO353_01540 0.51 +0.1 328,836 - AO353_01540 0.51 +0.2 328,863 + AO353_01540 0.55 +0.6 328,864 - AO353_01540 0.55 -0.5 328,864 - AO353_01540 0.55 +0.6 328,864 - AO353_01540 0.55 +1.4 328,864 - AO353_01540 0.55 -0.6 328,949 + AO353_01540 0.66 +0.3 328,949 + AO353_01540 0.66 +0.6 328,949 + AO353_01540 0.66 +0.3 328,949 + AO353_01540 0.66 -0.0 328,949 + AO353_01540 0.66 -0.1 328,949 + AO353_01540 0.66 -1.8 328,950 - AO353_01540 0.66 +1.2 328,950 - AO353_01540 0.66 +0.6 328,950 - AO353_01540 0.66 +0.8 328,950 - AO353_01540 0.66 -0.3 329,109 + AO353_01540 0.86 +0.4 329,143 - -0.1 329,216 + +0.3 329,216 + +0.4 329,216 + -0.4 329,216 + -0.8 329,219 + -0.9 329,220 - +2.0 329,220 - +0.5 329,220 - -0.3 329,220 - +0.5 329,229 + -0.1 329,238 + +0.4 329,268 - +0.2 329,306 + -0.4 329,306 + -0.7 329,306 + +1.5 329,306 + +0.2 329,306 + -0.2 329,307 - +0.1 329,307 - +0.1 329,307 - +1.4 329,307 - +0.0 329,307 - -0.6 329,307 - +0.2 329,307 - +0.1 329,316 - -0.2 329,316 - -0.4 329,353 + +0.2 329,353 + +0.2 329,354 - -0.9 329,354 - -0.0 329,367 + +1.6 329,367 + -0.2 329,368 - -0.1 329,368 - -0.1 329,368 - -0.5 329,374 - -0.7 329,374 - +1.0 329,377 + +0.5 329,378 - -0.7 329,378 - +0.3 329,378 - -0.7 329,385 + -1.8 329,434 + -0.2 329,434 + -1.0 329,434 + -1.8 329,435 - -0.3 329,541 + +1.0 329,542 - -0.7 329,542 - +0.2 329,590 - -1.0 329,674 - -1.2 329,674 - +0.6 329,702 + -1.0 329,702 + -2.4 329,702 + +0.3 329,702 + -0.5 329,702 + +0.6 329,702 + -0.6 329,703 - +0.6 329,703 - -0.3 329,727 - -1.4 329,786 + +0.5 329,786 + +0.0 329,786 + -0.4 329,787 - -0.0 329,787 - +0.2 329,787 - -0.7 329,787 - -0.5 329,794 + -0.5 329,794 + +1.0 329,795 - -0.7 329,878 + -1.8 329,879 - +0.3 329,879 - -0.1 329,879 - +0.3 329,879 - +1.0 329,879 - +0.1 329,879 - +0.3 329,880 + +0.9 329,908 + -0.6 329,979 + +0.4 330,003 + +0.2 330,004 - -0.0 330,004 - -0.9 330,012 + +0.3 330,012 + -0.1 330,012 + +0.5 330,013 - -0.2 330,013 - +0.1 330,013 - -0.0 330,013 - -0.3 330,038 + -0.6 330,038 + +0.3 330,038 + -0.2 330,038 + +0.6 330,038 + +0.4 330,038 + -0.6 330,039 - +0.7 330,039 - -1.3 330,039 - +0.3 330,039 - -1.6 330,039 - -0.6 330,039 - -1.5 330,070 + +0.7 330,070 + +0.9 330,071 - -0.2 330,086 - -0.2 330,086 - -0.5 330,170 + -1.2 330,170 + -0.3 330,190 - +0.5 330,190 - -1.4 330,190 - +0.4 330,197 + +0.6 330,197 + +0.1 330,198 - -0.4
Or see this region's nucleotide sequence