Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01355

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01345 and AO353_01350 are separated by 3 nucleotidesAO353_01350 and AO353_01355 overlap by 1 nucleotidesAO353_01355 and AO353_01360 are separated by 110 nucleotidesAO353_01360 and AO353_01365 are separated by 197 nucleotides AO353_01345: AO353_01345 - aminodeoxychorismate lyase, at 290,226 to 291,416 _01345 AO353_01350: AO353_01350 - 4-amino-4-deoxychorismate lyase, at 291,420 to 292,235 _01350 AO353_01355: AO353_01355 - 3-oxoacyl-ACP synthase, at 292,235 to 293,479 _01355 AO353_01360: AO353_01360 - acyl carrier protein, at 293,590 to 293,826 _01360 AO353_01365: AO353_01365 - 3-ketoacyl-ACP reductase, at 294,024 to 294,764 _01365 Position (kb) 292 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 291.283 kb on - strand, within AO353_01345at 291.283 kb on - strand, within AO353_01345at 291.292 kb on - strand, within AO353_01345at 291.292 kb on - strand, within AO353_01345at 291.292 kb on - strand, within AO353_01345at 291.292 kb on - strand, within AO353_01345at 291.306 kb on - strandat 291.364 kb on - strandat 291.408 kb on - strandat 291.408 kb on - strandat 291.408 kb on - strandat 291.408 kb on - strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.496 kb on + strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.497 kb on - strandat 291.520 kb on + strand, within AO353_01350at 291.520 kb on + strand, within AO353_01350at 291.704 kb on + strand, within AO353_01350at 291.704 kb on + strand, within AO353_01350at 291.875 kb on + strand, within AO353_01350at 291.875 kb on + strand, within AO353_01350at 291.875 kb on + strand, within AO353_01350at 291.876 kb on - strand, within AO353_01350at 291.876 kb on - strand, within AO353_01350at 291.921 kb on + strand, within AO353_01350at 291.921 kb on + strand, within AO353_01350at 291.922 kb on - strand, within AO353_01350at 291.922 kb on - strand, within AO353_01350at 291.922 kb on - strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.929 kb on + strand, within AO353_01350at 291.930 kb on - strand, within AO353_01350at 292.027 kb on + strand, within AO353_01350at 292.027 kb on + strand, within AO353_01350at 292.027 kb on + strand, within AO353_01350at 292.028 kb on - strand, within AO353_01350at 292.028 kb on - strand, within AO353_01350at 292.319 kb on - strandat 292.319 kb on - strandat 292.319 kb on - strandat 292.564 kb on + strand, within AO353_01355at 292.564 kb on + strand, within AO353_01355at 292.564 kb on + strand, within AO353_01355at 292.565 kb on - strand, within AO353_01355at 292.565 kb on - strand, within AO353_01355at 292.565 kb on - strand, within AO353_01355at 292.581 kb on + strand, within AO353_01355at 292.581 kb on + strand, within AO353_01355at 292.581 kb on + strand, within AO353_01355at 292.581 kb on + strand, within AO353_01355at 292.582 kb on - strand, within AO353_01355at 292.582 kb on - strand, within AO353_01355at 292.582 kb on - strand, within AO353_01355at 292.582 kb on - strand, within AO353_01355at 292.582 kb on - strand, within AO353_01355at 292.716 kb on + strand, within AO353_01355at 292.717 kb on - strand, within AO353_01355at 292.969 kb on + strand, within AO353_01355at 292.988 kb on - strand, within AO353_01355at 293.007 kb on + strand, within AO353_01355at 293.007 kb on + strand, within AO353_01355at 293.007 kb on + strand, within AO353_01355at 293.008 kb on - strand, within AO353_01355at 293.008 kb on - strand, within AO353_01355at 293.008 kb on - strand, within AO353_01355at 293.008 kb on - strand, within AO353_01355at 293.008 kb on - strand, within AO353_01355at 293.011 kb on + strand, within AO353_01355at 293.023 kb on + strand, within AO353_01355at 293.056 kb on + strand, within AO353_01355at 293.057 kb on - strand, within AO353_01355at 293.057 kb on - strand, within AO353_01355at 293.057 kb on - strand, within AO353_01355at 293.180 kb on - strand, within AO353_01355at 293.180 kb on - strand, within AO353_01355at 293.250 kb on + strand, within AO353_01355at 293.251 kb on - strand, within AO353_01355at 293.295 kb on + strand, within AO353_01355at 293.295 kb on + strand, within AO353_01355at 293.295 kb on + strand, within AO353_01355at 293.296 kb on - strand, within AO353_01355at 293.343 kb on + strand, within AO353_01355at 293.343 kb on + strand, within AO353_01355at 293.344 kb on - strand, within AO353_01355at 293.398 kb on + strandat 293.398 kb on + strandat 293.399 kb on - strandat 293.443 kb on + strandat 293.443 kb on + strandat 293.443 kb on + strandat 293.443 kb on + strandat 293.443 kb on + strandat 293.443 kb on + strandat 293.444 kb on - strandat 293.444 kb on - strandat 293.444 kb on - strandat 293.520 kb on + strandat 293.521 kb on - strandat 293.521 kb on - strandat 293.876 kb on - strandat 293.884 kb on - strandat 293.947 kb on - strandat 293.949 kb on - strandat 293.949 kb on - strandat 293.949 kb on - strandat 293.953 kb on - strandat 293.953 kb on - strandat 293.953 kb on - strandat 293.953 kb on - strandat 293.953 kb on - strandat 293.953 kb on - strandat 293.953 kb on - strandat 293.953 kb on - strandat 293.966 kb on - strandat 293.966 kb on - strandat 293.966 kb on - strandat 293.966 kb on - strandat 293.968 kb on - strandat 293.989 kb on - strandat 293.989 kb on - strandat 293.989 kb on - strandat 294.026 kb on - strandat 294.026 kb on - strandat 294.026 kb on - strandat 294.032 kb on - strandat 294.032 kb on - strandat 294.032 kb on - strandat 294.032 kb on - strandat 294.032 kb on - strandat 294.032 kb on - strandat 294.032 kb on - strandat 294.032 kb on - strandat 294.032 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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291,283 - AO353_01345 0.89 +0.8
291,283 - AO353_01345 0.89 -0.3
291,292 - AO353_01345 0.90 +0.2
291,292 - AO353_01345 0.90 +0.4
291,292 - AO353_01345 0.90 +0.9
291,292 - AO353_01345 0.90 +0.5
291,306 - -0.6
291,364 - -0.0
291,408 - -0.1
291,408 - +2.1
291,408 - +1.2
291,408 - +0.4
291,496 + -1.3
291,496 + +0.2
291,496 + +0.5
291,496 + -1.1
291,496 + +1.2
291,497 - +0.4
291,497 - +0.7
291,497 - +0.4
291,497 - +0.2
291,497 - +0.1
291,497 - -0.5
291,497 - -0.7
291,520 + AO353_01350 0.12 +1.9
291,520 + AO353_01350 0.12 -1.3
291,704 + AO353_01350 0.35 -0.2
291,704 + AO353_01350 0.35 -0.4
291,875 + AO353_01350 0.56 -0.2
291,875 + AO353_01350 0.56 -0.5
291,875 + AO353_01350 0.56 +0.2
291,876 - AO353_01350 0.56 -2.3
291,876 - AO353_01350 0.56 -0.1
291,921 + AO353_01350 0.61 -2.4
291,921 + AO353_01350 0.61 -0.4
291,922 - AO353_01350 0.62 +0.1
291,922 - AO353_01350 0.62 +0.2
291,922 - AO353_01350 0.62 -0.4
291,929 + AO353_01350 0.62 +0.9
291,929 + AO353_01350 0.62 -0.1
291,929 + AO353_01350 0.62 +0.5
291,929 + AO353_01350 0.62 +0.9
291,929 + AO353_01350 0.62 +0.5
291,930 - AO353_01350 0.62 +0.4
292,027 + AO353_01350 0.74 +0.5
292,027 + AO353_01350 0.74 +0.4
292,027 + AO353_01350 0.74 +1.7
292,028 - AO353_01350 0.75 +0.6
292,028 - AO353_01350 0.75 -0.2
292,319 - -1.8
292,319 - +0.7
292,319 - -1.1
292,564 + AO353_01355 0.26 -0.3
292,564 + AO353_01355 0.26 +0.0
292,564 + AO353_01355 0.26 -0.2
292,565 - AO353_01355 0.27 -1.9
292,565 - AO353_01355 0.27 +0.5
292,565 - AO353_01355 0.27 -2.6
292,581 + AO353_01355 0.28 -0.4
292,581 + AO353_01355 0.28 -1.2
292,581 + AO353_01355 0.28 -0.9
292,581 + AO353_01355 0.28 -0.2
292,582 - AO353_01355 0.28 -1.1
292,582 - AO353_01355 0.28 -1.8
292,582 - AO353_01355 0.28 +0.5
292,582 - AO353_01355 0.28 -0.3
292,582 - AO353_01355 0.28 -0.6
292,716 + AO353_01355 0.39 -0.5
292,717 - AO353_01355 0.39 -0.6
292,969 + AO353_01355 0.59 -0.2
292,988 - AO353_01355 0.60 -0.5
293,007 + AO353_01355 0.62 -0.2
293,007 + AO353_01355 0.62 -0.1
293,007 + AO353_01355 0.62 -0.3
293,008 - AO353_01355 0.62 -0.5
293,008 - AO353_01355 0.62 -0.6
293,008 - AO353_01355 0.62 -1.1
293,008 - AO353_01355 0.62 -1.3
293,008 - AO353_01355 0.62 -0.6
293,011 + AO353_01355 0.62 -0.5
293,023 + AO353_01355 0.63 -2.8
293,056 + AO353_01355 0.66 -2.6
293,057 - AO353_01355 0.66 -0.3
293,057 - AO353_01355 0.66 -0.5
293,057 - AO353_01355 0.66 -1.3
293,180 - AO353_01355 0.76 -0.3
293,180 - AO353_01355 0.76 +0.1
293,250 + AO353_01355 0.82 -1.1
293,251 - AO353_01355 0.82 -1.1
293,295 + AO353_01355 0.85 -2.1
293,295 + AO353_01355 0.85 +0.6
293,295 + AO353_01355 0.85 -1.1
293,296 - AO353_01355 0.85 -1.0
293,343 + AO353_01355 0.89 +0.5
293,343 + AO353_01355 0.89 -1.2
293,344 - AO353_01355 0.89 -1.3
293,398 + -0.0
293,398 + -2.0
293,399 - -0.4
293,443 + +0.8
293,443 + -0.5
293,443 + -1.6
293,443 + -2.2
293,443 + -2.5
293,443 + +0.5
293,444 - -1.1
293,444 - -0.5
293,444 - -0.7
293,520 + -0.2
293,521 - +0.9
293,521 - +0.2
293,876 - -2.0
293,884 - +0.9
293,947 - -0.3
293,949 - +0.4
293,949 - -0.9
293,949 - +1.3
293,953 - +0.4
293,953 - -0.1
293,953 - +0.3
293,953 - -1.1
293,953 - -0.2
293,953 - -1.3
293,953 - +0.8
293,953 - -0.8
293,966 - -1.6
293,966 - +0.8
293,966 - +0.1
293,966 - +1.2
293,968 - -0.1
293,989 - -0.4
293,989 - -1.0
293,989 - -0.3
294,026 - -0.5
294,026 - +0.1
294,026 - -1.0
294,032 - -0.2
294,032 - -0.2
294,032 - -0.3
294,032 - -0.1
294,032 - +0.4
294,032 - -1.4
294,032 - -0.5
294,032 - -1.4
294,032 - -0.6

Or see this region's nucleotide sequence