Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004000 and ABIE53_004001 overlap by 8 nucleotides ABIE53_004001 and ABIE53_004002 are separated by 337 nucleotides ABIE53_004002 and ABIE53_004003 are separated by 136 nucleotides
ABIE53_004000: ABIE53_004000 - hypothetical protein, at 157,717 to 158,106
_004000
ABIE53_004001: ABIE53_004001 - hypothetical protein, at 158,099 to 158,311
_004001
ABIE53_004002: ABIE53_004002 - outer membrane protein insertion porin family, at 158,649 to 160,958
_004002
ABIE53_004003: ABIE53_004003 - putative MFS family arabinose efflux permease, at 161,095 to 162,345
_004003
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 157.955 kb on - strand, within ABIE53_004000 at 157.990 kb on + strand, within ABIE53_004000 at 158.040 kb on - strand, within ABIE53_004000 at 158.364 kb on + strand at 159.112 kb on - strand, within ABIE53_004002 at 159.227 kb on + strand, within ABIE53_004002 at 159.232 kb on + strand, within ABIE53_004002 at 159.312 kb on + strand, within ABIE53_004002 at 159.358 kb on - strand, within ABIE53_004002 at 159.406 kb on + strand, within ABIE53_004002 at 159.407 kb on - strand, within ABIE53_004002 at 159.431 kb on + strand, within ABIE53_004002 at 159.432 kb on - strand, within ABIE53_004002 at 159.432 kb on - strand, within ABIE53_004002 at 159.482 kb on + strand, within ABIE53_004002 at 159.714 kb on + strand, within ABIE53_004002 at 159.718 kb on + strand, within ABIE53_004002 at 159.764 kb on - strand, within ABIE53_004002 at 160.069 kb on - strand, within ABIE53_004002 at 160.102 kb on - strand, within ABIE53_004002 at 160.156 kb on - strand, within ABIE53_004002 at 160.164 kb on + strand, within ABIE53_004002 at 160.165 kb on - strand, within ABIE53_004002 at 160.168 kb on - strand, within ABIE53_004002 at 160.245 kb on - strand, within ABIE53_004002 at 160.251 kb on + strand, within ABIE53_004002 at 160.252 kb on - strand, within ABIE53_004002 at 160.314 kb on - strand, within ABIE53_004002 at 160.320 kb on + strand, within ABIE53_004002 at 160.321 kb on - strand, within ABIE53_004002 at 160.321 kb on - strand, within ABIE53_004002 at 160.416 kb on + strand, within ABIE53_004002 at 160.470 kb on + strand, within ABIE53_004002 at 160.497 kb on + strand, within ABIE53_004002 at 160.498 kb on - strand, within ABIE53_004002 at 160.593 kb on + strand, within ABIE53_004002 at 160.594 kb on - strand, within ABIE53_004002 at 160.594 kb on - strand, within ABIE53_004002 at 160.597 kb on - strand, within ABIE53_004002 at 160.802 kb on + strand at 160.833 kb on + strand at 160.833 kb on + strand at 160.834 kb on - strand at 160.834 kb on - strand at 160.834 kb on - strand at 160.972 kb on + strand at 161.567 kb on + strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.568 kb on - strand, within ABIE53_004003 at 161.672 kb on + strand, within ABIE53_004003 at 161.693 kb on + strand, within ABIE53_004003 at 161.693 kb on + strand, within ABIE53_004003 at 161.694 kb on - strand, within ABIE53_004003 at 161.737 kb on - strand, within ABIE53_004003 at 161.793 kb on + strand, within ABIE53_004003 at 161.794 kb on - strand, within ABIE53_004003 at 161.840 kb on - strand, within ABIE53_004003 at 161.907 kb on + strand, within ABIE53_004003
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 157,955 - ABIE53_004000 0.61 +0.2 157,990 + ABIE53_004000 0.70 -0.0 158,040 - ABIE53_004000 0.83 +0.5 158,364 + -1.1 159,112 - ABIE53_004002 0.20 -1.0 159,227 + ABIE53_004002 0.25 -0.3 159,232 + ABIE53_004002 0.25 -0.0 159,312 + ABIE53_004002 0.29 +1.2 159,358 - ABIE53_004002 0.31 +0.5 159,406 + ABIE53_004002 0.33 +0.7 159,407 - ABIE53_004002 0.33 +0.2 159,431 + ABIE53_004002 0.34 -0.6 159,432 - ABIE53_004002 0.34 -0.3 159,432 - ABIE53_004002 0.34 +0.8 159,482 + ABIE53_004002 0.36 +0.1 159,714 + ABIE53_004002 0.46 -0.3 159,718 + ABIE53_004002 0.46 +0.5 159,764 - ABIE53_004002 0.48 -0.5 160,069 - ABIE53_004002 0.61 -1.5 160,102 - ABIE53_004002 0.63 -2.4 160,156 - ABIE53_004002 0.65 -2.2 160,164 + ABIE53_004002 0.66 +0.2 160,165 - ABIE53_004002 0.66 +1.3 160,168 - ABIE53_004002 0.66 -1.3 160,245 - ABIE53_004002 0.69 -3.4 160,251 + ABIE53_004002 0.69 -0.9 160,252 - ABIE53_004002 0.69 -0.5 160,314 - ABIE53_004002 0.72 -0.6 160,320 + ABIE53_004002 0.72 -0.8 160,321 - ABIE53_004002 0.72 +0.3 160,321 - ABIE53_004002 0.72 -0.6 160,416 + ABIE53_004002 0.76 +0.2 160,470 + ABIE53_004002 0.79 +0.5 160,497 + ABIE53_004002 0.80 +0.3 160,498 - ABIE53_004002 0.80 -1.2 160,593 + ABIE53_004002 0.84 -0.4 160,594 - ABIE53_004002 0.84 -1.1 160,594 - ABIE53_004002 0.84 -1.3 160,597 - ABIE53_004002 0.84 +0.8 160,802 + -0.1 160,833 + +0.0 160,833 + +0.4 160,834 - -0.1 160,834 - -1.5 160,834 - -0.2 160,972 + +0.7 161,567 + ABIE53_004003 0.38 -0.1 161,568 - ABIE53_004003 0.38 -1.2 161,568 - ABIE53_004003 0.38 +0.1 161,568 - ABIE53_004003 0.38 +0.4 161,568 - ABIE53_004003 0.38 -0.5 161,672 + ABIE53_004003 0.46 -0.8 161,693 + ABIE53_004003 0.48 -1.5 161,693 + ABIE53_004003 0.48 -0.8 161,694 - ABIE53_004003 0.48 -0.6 161,737 - ABIE53_004003 0.51 -1.9 161,793 + ABIE53_004003 0.56 +0.3 161,794 - ABIE53_004003 0.56 +0.5 161,840 - ABIE53_004003 0.60 -0.7 161,907 + ABIE53_004003 0.65 +0.1
Or see this region's nucleotide sequence